Wall clock time and date at job start Sat Apr 11 2020 08:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47131 * 2 1 4 4 C 1.52995 * 109.47274 * 239.99882 * 2 1 3 5 5 C 1.53000 * 109.47266 * 175.00235 * 4 2 1 6 6 C 1.52999 * 109.46917 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46917 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47382 * 180.02562 * 7 6 5 9 9 C 1.36937 * 120.00254 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00181 * 179.71934 * 9 8 7 12 12 N 1.31619 * 119.99658 * 0.28414 * 11 9 8 13 13 Si 1.86791 * 120.00217 * 180.27479 * 11 9 8 14 14 H 1.48499 * 109.47011 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46823 * 120.00291 * 13 11 9 16 16 H 1.48495 * 109.47371 * 240.00590 * 13 11 9 17 17 N 1.46496 * 109.46600 * 119.99924 * 2 1 3 18 18 C 1.34777 * 120.00393 * 274.99871 * 17 2 1 19 19 O 1.21284 * 119.99739 * 354.92390 * 18 17 2 20 20 C 1.50700 * 120.00441 * 174.92791 * 18 17 2 21 21 H 1.09001 * 109.43688 * 24.33876 * 20 18 17 22 22 C 1.53065 * 109.43894 * 144.25833 * 20 18 17 23 23 C 1.53414 * 108.29024 * 168.25456 * 22 20 18 24 24 O 1.42824 * 108.37283 * 295.25025 * 23 22 20 25 25 C 1.35852 * 117.85899 * 49.15044 * 24 23 22 26 26 C 1.39143 * 118.49889 * 162.98311 * 25 24 23 27 27 C 1.37975 * 120.21439 * 179.82212 * 26 25 24 28 28 C 1.38285 * 119.95929 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.98090 * 0.07366 * 28 27 26 30 30 C 1.38375 * 121.80472 * 342.92585 * 25 24 23 31 31 H 1.09001 * 109.46801 * 59.99916 * 1 2 3 32 32 H 1.08994 * 109.47279 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00210 * 1 2 3 34 34 H 1.09003 * 109.46864 * 55.00045 * 4 2 1 35 35 H 1.08998 * 109.47009 * 295.00610 * 4 2 1 36 36 H 1.08997 * 109.47023 * 60.00406 * 5 4 2 37 37 H 1.08995 * 109.46690 * 300.00144 * 5 4 2 38 38 H 1.08997 * 109.47456 * 60.00503 * 6 5 4 39 39 H 1.08995 * 109.47548 * 299.99607 * 6 5 4 40 40 H 1.09003 * 109.47335 * 60.00086 * 7 6 5 41 41 H 1.09006 * 109.47303 * 299.99817 * 7 6 5 42 42 H 0.97003 * 119.99896 * 0.02562 * 8 7 6 43 43 H 0.97002 * 119.99946 * 179.97438 * 12 11 9 44 44 H 0.97003 * 120.00056 * 95.00596 * 17 2 1 45 45 H 1.09004 * 109.69784 * 287.94911 * 22 20 18 46 46 H 1.08995 * 109.70505 * 48.55283 * 22 20 18 47 47 H 1.09001 * 109.68652 * 54.97586 * 23 22 20 48 48 H 1.09008 * 109.68331 * 175.53126 * 23 22 20 49 49 H 1.08000 * 119.89356 * 359.79451 * 26 25 24 50 50 H 1.08005 * 120.01767 * 179.97438 * 27 26 25 51 51 H 1.08002 * 120.00735 * 180.10765 * 28 27 26 52 52 H 1.08003 * 119.83498 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 6 5.5996 -1.2267 -2.6272 8 7 6.0879 -1.9163 -3.8240 9 6 7.4300 -1.9525 -4.0938 10 1 8.1285 -1.4730 -3.4240 11 6 7.8931 -2.6109 -5.2247 12 7 7.0418 -3.1955 -6.0406 13 14 9.7244 -2.6668 -5.5886 14 1 10.4628 -1.9396 -4.5251 15 1 10.1782 -4.0803 -5.6278 16 1 9.9880 -2.0256 -6.9017 17 7 2.0182 -0.6906 1.1962 18 6 2.1469 -0.0183 2.3572 19 8 1.9472 1.1775 2.3908 20 6 2.5391 -0.7523 3.6136 21 1 3.0796 -1.6611 3.3490 22 6 3.4382 0.1446 4.4680 23 6 3.5798 -0.4965 5.8545 24 8 2.2963 -0.5023 6.4810 25 6 1.2430 -0.9764 5.7658 26 6 0.0817 -1.3270 6.4474 27 6 -1.0107 -1.8089 5.7559 28 6 -0.9529 -1.9438 4.3808 29 6 0.1985 -1.5977 3.7012 30 6 1.2989 -1.1155 4.3902 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6054 -0.2617 -2.1369 35 1 1.7516 -1.7715 -1.2055 36 1 3.9994 -1.0729 -0.4259 37 1 3.8532 0.4369 -1.3572 38 1 3.6402 -0.8741 -3.4507 39 1 3.7864 -2.3843 -2.5200 40 1 6.0339 -1.6869 -1.7397 41 1 5.8885 -0.1765 -2.6703 42 1 5.4605 -2.3466 -4.4258 43 1 7.3654 -3.6553 -6.8311 44 1 2.2490 -1.6318 1.1526 45 1 4.4195 0.2321 4.0017 46 1 2.9872 1.1322 4.5641 47 1 3.9425 -1.5191 5.7509 48 1 4.2797 0.0826 6.4570 49 1 0.0354 -1.2221 7.5213 50 1 -1.9104 -2.0804 6.2882 51 1 -1.8081 -2.3193 3.8385 52 1 0.2412 -1.7045 2.6273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175719783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:10 Heat of formation + Delta-G solvation = -84.917350 kcal Electronic energy + Delta-G solvation = -29950.597503 eV Core-core repulsion = 25913.494341 eV Total energy + Delta-G solvation = -4037.103162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.12900 -40.55484 -38.46662 -38.10210 -36.86114 -35.32220 -34.77244 -32.94744 -31.78649 -31.44306 -31.19618 -28.83081 -27.47026 -25.94296 -24.83166 -24.00084 -23.49095 -22.30548 -22.01401 -21.57848 -20.75229 -19.14387 -19.03608 -18.13101 -17.77562 -17.20857 -17.12008 -16.69323 -16.29899 -15.97338 -15.75462 -15.46578 -15.32613 -15.26802 -14.91497 -14.78137 -14.70243 -14.29920 -14.22624 -14.15506 -13.98041 -13.43118 -13.25933 -13.02693 -12.94342 -12.90357 -12.86098 -12.51935 -12.45829 -12.29011 -12.11807 -12.07483 -11.89713 -11.86604 -11.81779 -11.64919 -11.49207 -11.39843 -10.95904 -10.90023 -10.09585 -9.80947 -9.16472 -9.02419 -7.97787 -5.26984 0.26951 0.42626 1.46112 1.47160 1.53338 1.57441 2.10574 2.35312 2.54329 2.77602 3.35677 3.41725 3.55929 3.58189 3.68192 3.83732 4.02385 4.04910 4.08542 4.11919 4.15710 4.19491 4.34283 4.35148 4.41352 4.49271 4.50334 4.52194 4.59896 4.63567 4.64160 4.77275 4.86516 4.88713 4.92897 4.97314 4.99814 5.02143 5.05768 5.12171 5.25997 5.29014 5.31515 5.41914 5.43913 5.45456 5.52667 5.55514 5.57927 5.82386 6.25430 6.43156 6.51061 7.19881 7.30994 8.07766 8.30979 9.26009 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.001840 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.590619 B =15213.502190 C =16159.572393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.292 1.292 17 N -0.710 5.710 18 C 0.529 3.471 19 O -0.577 6.577 20 C -0.062 4.062 21 H 0.126 0.874 22 C -0.147 4.147 23 C 0.062 3.938 24 O -0.331 6.331 25 C 0.121 3.879 26 C -0.163 4.163 27 C -0.083 4.083 28 C -0.156 4.156 29 C -0.094 4.094 30 C -0.164 4.164 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.414 0.586 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.132 0.868 49 H 0.141 0.859 50 H 0.156 0.844 51 H 0.145 0.855 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 2.168 26.662 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.219 1.219 17 N -0.362 5.362 18 C 0.315 3.685 19 O -0.456 6.456 20 C -0.083 4.083 21 H 0.144 0.856 22 C -0.185 4.185 23 C -0.013 4.013 24 O -0.246 6.246 25 C 0.076 3.924 26 C -0.182 4.182 27 C -0.101 4.101 28 C -0.174 4.174 29 C -0.112 4.112 30 C -0.165 4.165 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.150 0.850 49 H 0.159 0.841 50 H 0.173 0.827 51 H 0.163 0.837 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.255 3.143 26.906 32.666 hybrid contribution 1.095 -0.454 -1.065 1.594 sum -17.159 2.689 25.841 31.136 Atomic orbital electron populations 1.22127 0.94305 1.03032 1.02103 1.20970 0.94421 0.96762 0.83993 0.91563 1.21835 0.94698 1.02032 0.96795 1.21419 0.95833 1.00072 0.96944 1.21597 0.93708 1.00969 0.98731 1.20863 0.94284 0.94224 0.88475 1.42642 1.04530 1.65468 1.26549 1.19694 0.85333 1.27534 1.05505 0.90837 1.25620 1.02297 1.01194 0.97888 1.69822 1.34612 1.41887 1.15673 0.85038 0.79825 0.77102 0.77583 1.19115 1.21735 1.21897 1.46151 1.66450 1.14634 1.08982 1.20518 0.75808 0.87025 0.85124 1.90685 1.51952 1.16677 1.86326 1.20207 0.95286 1.00510 0.92337 0.85618 1.22153 1.01069 0.99032 0.96225 1.23226 0.82135 1.02669 0.93229 1.85969 1.16657 1.79269 1.42679 1.18928 0.88937 0.94896 0.89620 1.20900 0.92238 1.03816 1.01223 1.21319 0.98115 0.96300 0.94368 1.21343 0.98553 1.02559 0.94936 1.21201 0.92550 0.97001 1.00440 1.19465 0.97204 1.07290 0.92558 0.90592 0.90742 0.94078 0.89656 0.89587 0.91436 0.92796 0.92523 0.91788 0.96319 0.97026 0.79415 0.93899 0.74925 0.87839 0.91557 0.89865 0.84990 0.84110 0.82668 0.83679 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.14 2.47 2.62 44.99 0.12 2.59 16 3 H 0.07 1.50 7.51 -2.39 -0.02 1.49 16 4 C -0.12 -1.89 4.75 30.59 0.15 -1.75 16 5 C -0.10 -2.31 5.10 30.59 0.16 -2.15 16 6 C -0.11 -3.35 5.33 30.59 0.16 -3.18 16 7 C 0.15 5.93 6.26 86.38 0.54 6.47 16 8 N -0.75 -38.94 5.60 -343.44 -1.92 -40.86 16 9 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 12 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 13 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 16 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 17 N -0.71 -11.21 3.81 -442.54 -1.69 -12.90 16 18 C 0.53 10.97 5.76 87.66 0.50 11.48 16 19 O -0.58 -17.20 15.70 -3.04 -0.05 -17.25 16 20 C -0.06 -1.03 2.71 -12.24 -0.03 -1.06 16 21 H 0.13 1.39 8.08 -2.39 -0.02 1.38 16 22 C -0.15 -2.37 5.35 30.75 0.16 -2.20 16 23 C 0.06 0.80 7.03 72.12 0.51 1.30 16 24 O -0.33 -6.31 10.27 -91.89 -0.94 -7.25 16 25 C 0.12 2.36 6.47 22.52 0.15 2.50 16 26 C -0.16 -2.67 9.94 22.42 0.22 -2.45 16 27 C -0.08 -1.09 10.04 22.22 0.22 -0.87 16 28 C -0.16 -2.15 10.04 22.25 0.22 -1.93 16 29 C -0.09 -1.53 9.10 22.30 0.20 -1.33 16 30 C -0.16 -3.01 5.43 -19.75 -0.11 -3.12 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.40 7.75 -2.39 -0.02 1.38 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 44 H 0.41 4.47 8.56 -92.71 -0.79 3.68 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.07 1.46 7.46 -2.39 -0.02 1.44 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 50 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 51 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 52 H 0.13 1.85 6.80 -2.91 -0.02 1.83 16 Total: -1.00 -75.91 420.20 2.28 -73.63 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.59 Total: 30.49 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 5.17 Total: -14.84 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.33 Total: -113.20 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.99 Total: -24.50 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.91 2.28 -73.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175719783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.292 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds