Wall clock time and date at job start Sat Apr 11 2020 08:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47201 * 2 1 4 4 C 1.53006 * 109.46737 * 119.99281 * 2 1 3 5 5 C 1.53008 * 109.46807 * 184.99734 * 4 2 1 6 6 C 1.52996 * 109.46808 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47237 * 179.97438 * 7 6 5 9 9 C 1.36939 * 120.00073 * 179.72302 * 8 7 6 10 10 H 1.08004 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99849 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00455 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47227 * 89.99498 * 13 11 9 15 15 H 1.48496 * 109.47434 * 209.99930 * 13 11 9 16 16 H 1.48507 * 109.46769 * 330.00032 * 13 11 9 17 17 N 1.46493 * 109.47395 * 239.99747 * 2 1 3 18 18 C 1.34775 * 120.00428 * 84.99626 * 17 2 1 19 19 O 1.21278 * 119.99599 * 0.02562 * 18 17 2 20 20 C 1.50693 * 120.00334 * 179.97438 * 18 17 2 21 21 H 1.08998 * 109.68272 * 305.00900 * 20 18 17 22 22 C 1.53411 * 109.67956 * 65.52535 * 20 18 17 23 23 C 1.53077 * 108.29956 * 184.42843 * 22 20 18 24 24 C 1.50772 * 109.67954 * 311.79404 * 23 22 20 25 25 C 1.38509 * 118.76255 * 197.82384 * 24 23 22 26 26 C 1.38105 * 120.31485 * 180.15519 * 25 24 23 27 27 C 1.38286 * 119.98242 * 0.02948 * 26 25 24 28 28 C 1.37975 * 119.96180 * 359.91623 * 27 26 25 29 29 C 1.38367 * 121.40509 * 17.84256 * 24 23 22 30 30 O 1.35858 * 121.81984 * 359.52422 * 29 24 23 31 31 H 1.09002 * 109.47039 * 60.00434 * 1 2 3 32 32 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47184 * 300.00470 * 1 2 3 34 34 H 1.08996 * 109.46626 * 65.00428 * 4 2 1 35 35 H 1.08994 * 109.47559 * 305.00151 * 4 2 1 36 36 H 1.09000 * 109.46719 * 60.00443 * 5 4 2 37 37 H 1.08994 * 109.47402 * 300.00513 * 5 4 2 38 38 H 1.09000 * 109.47441 * 60.00491 * 6 5 4 39 39 H 1.09002 * 109.47087 * 299.99937 * 6 5 4 40 40 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 41 41 H 1.08998 * 109.47454 * 300.00107 * 7 6 5 42 42 H 0.97005 * 119.99811 * 0.02562 * 8 7 6 43 43 H 0.97000 * 120.00679 * 179.97438 * 12 11 9 44 44 H 0.97008 * 119.99462 * 265.00524 * 17 2 1 45 45 H 1.09002 * 109.70099 * 304.12689 * 22 20 18 46 46 H 1.08998 * 109.69974 * 64.69065 * 22 20 18 47 47 H 1.09002 * 109.43457 * 71.85195 * 23 22 20 48 48 H 1.08998 * 109.44027 * 191.77002 * 23 22 20 49 49 H 1.07998 * 119.84026 * 0.14208 * 25 24 23 50 50 H 1.07999 * 120.00956 * 180.02562 * 26 25 24 51 51 H 1.08003 * 120.01908 * 179.89481 * 27 26 25 52 52 H 1.07997 * 119.89106 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3349 2.5628 7 6 5.5995 -1.2264 2.6276 8 7 6.0878 -1.9169 3.8239 9 6 7.4303 -1.9577 4.0909 10 1 8.1291 -1.4805 3.4197 11 6 7.8930 -2.6124 5.2240 12 7 7.0414 -3.1935 6.0423 13 14 9.7242 -2.6675 5.5887 14 1 10.0996 -1.4933 6.4168 15 1 10.0449 -3.9160 6.3259 16 1 10.4840 -2.6367 4.3131 17 7 2.0183 -0.6906 -1.1961 18 6 2.1470 -0.0184 -2.3571 19 8 1.8590 1.1584 -2.4115 20 6 2.6500 -0.7287 -3.5873 21 1 3.6104 -1.1977 -3.3736 22 6 1.6371 -1.7979 -4.0169 23 6 2.2276 -2.5724 -5.1978 24 6 2.7607 -1.6049 -6.2240 25 6 2.9924 -2.0596 -7.5116 26 6 3.4833 -1.2017 -8.4761 27 6 3.7465 0.1180 -8.1578 28 6 3.5166 0.5770 -6.8771 29 6 3.0198 -0.2841 -5.9034 30 8 2.7987 0.2069 -4.6561 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7515 -1.7714 1.2058 35 1 1.6053 -0.2616 2.1370 36 1 3.8531 0.4370 1.3574 37 1 3.9994 -1.0728 0.4262 38 1 3.7864 -2.3851 2.5189 39 1 3.6401 -0.8756 3.4507 40 1 5.8876 -0.1761 2.6718 41 1 6.0345 -1.6854 1.7398 42 1 5.4605 -2.3490 4.4246 43 1 7.3647 -3.6513 6.8340 44 1 2.2490 -1.6319 -1.1524 45 1 1.4488 -2.4798 -3.1877 46 1 0.7050 -1.3206 -4.3191 47 1 3.0384 -3.2096 -4.8446 48 1 1.4521 -3.1899 -5.6509 49 1 2.7883 -3.0901 -7.7625 50 1 3.6618 -1.5614 -9.4787 51 1 4.1320 0.7891 -8.9111 52 1 3.7229 1.6078 -6.6296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175767163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:42 Heat of formation + Delta-G solvation = -62.907083 kcal Electronic energy + Delta-G solvation = -29442.009142 eV Core-core repulsion = 25405.860418 eV Total energy + Delta-G solvation = -4036.148725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.35497 -39.88189 -37.84390 -36.86709 -35.30286 -34.85236 -33.29837 -32.02814 -30.89251 -30.56533 -30.15307 -27.47728 -26.82549 -24.29916 -24.22240 -22.86484 -22.46292 -21.51389 -20.87299 -20.67513 -20.28419 -18.34460 -17.75356 -17.12463 -16.99529 -16.37618 -15.70150 -15.62164 -15.13514 -14.93461 -14.75456 -14.67897 -14.40418 -14.28123 -13.95973 -13.73413 -13.58817 -13.43824 -13.17311 -13.01137 -12.96642 -12.90231 -12.41035 -12.28627 -11.93796 -11.80274 -11.67016 -11.52601 -11.42846 -11.29043 -11.02144 -10.90833 -10.81702 -10.73183 -10.43803 -10.32769 -10.00592 -9.96593 -9.67413 -9.33999 -9.17585 -8.85954 -8.52785 -6.90475 -5.75600 -3.04036 0.92885 1.05499 2.21813 2.29778 3.23664 3.41912 3.44076 3.48983 3.50767 4.02884 4.11572 4.24748 4.34255 4.45820 4.51642 4.63307 4.70299 4.72382 4.81245 4.85304 4.93674 5.02168 5.07830 5.14116 5.21550 5.28353 5.35842 5.41147 5.42963 5.48534 5.53218 5.58441 5.65086 5.65935 5.74948 5.85035 5.90852 5.91960 6.06372 6.06651 6.15941 6.16198 6.28447 6.31240 6.37273 6.39282 6.45112 6.88691 6.92591 7.01236 7.19493 7.70911 7.89601 8.43777 9.54523 10.13641 10.48198 11.47434 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.001827 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.599259 B =15324.962058 C =16945.130473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.717 5.717 18 C 0.523 3.477 19 O -0.516 6.516 20 C 0.074 3.926 21 H 0.100 0.900 22 C -0.148 4.148 23 C -0.077 4.077 24 C -0.164 4.164 25 C -0.084 4.084 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.145 4.145 29 C 0.134 3.866 30 O -0.288 6.288 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.401 0.599 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.124 0.876 51 H 0.129 0.871 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 1.833 -27.862 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.370 5.370 18 C 0.307 3.693 19 O -0.390 6.390 20 C 0.014 3.986 21 H 0.118 0.882 22 C -0.186 4.186 23 C -0.114 4.114 24 C -0.164 4.164 25 C -0.102 4.102 26 C -0.171 4.171 27 C -0.105 4.105 28 C -0.164 4.164 29 C 0.089 3.911 30 O -0.201 6.201 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.236 0.764 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.106 0.894 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.147 0.853 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.048 2.935 -27.837 32.265 hybrid contribution 0.980 -0.916 0.486 1.427 sum -15.068 2.018 -27.350 31.291 Atomic orbital electron populations 1.22181 0.95206 1.02162 1.02636 1.21094 0.93832 0.97809 0.83400 0.89145 1.21948 0.96924 1.00962 0.96622 1.21531 0.93903 1.01203 0.98662 1.21725 0.97272 1.00240 0.97099 1.20651 0.90996 0.95366 0.90546 1.42389 1.05306 1.64969 1.25218 1.19256 0.83896 1.28420 1.05419 0.91231 1.24751 0.97744 1.00996 0.97704 1.69661 1.32750 1.40913 1.15035 0.86177 0.85074 0.77029 0.77855 1.21711 1.21760 1.20774 1.45957 1.67661 1.14176 1.09232 1.19865 0.78265 0.87286 0.83843 1.90749 1.48310 1.15451 1.84516 1.22254 1.00513 0.89644 0.86195 0.88206 1.22212 0.98953 0.97675 0.99765 1.20500 1.00933 0.96428 0.93495 1.19833 1.05982 0.94052 0.96580 1.20897 0.97895 0.99679 0.91770 1.21041 1.02485 0.93968 0.99635 1.20956 0.98310 0.95872 0.95405 1.20646 1.02851 1.00405 0.92456 1.18753 0.95747 0.92099 0.84536 1.86080 1.86699 1.33947 1.13402 0.92255 0.92391 0.91332 0.91246 0.90009 0.91902 0.92179 0.92121 0.92014 0.96555 0.96658 0.78353 0.93551 0.76383 0.88955 0.89712 0.89837 0.89417 0.85751 0.85829 0.85320 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.30 2.57 -67.93 -0.17 1.13 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.15 4.75 -26.72 -0.13 -1.27 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.10 6.26 -4.04 -0.03 3.07 16 8 N -0.73 -19.09 5.60 -59.91 -0.34 -19.43 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.72 -6.01 4.48 -53.81 -0.24 -6.25 16 18 C 0.52 5.73 7.15 -10.99 -0.08 5.66 16 19 O -0.52 -7.93 16.18 -14.20 -0.23 -8.16 16 20 C 0.07 0.67 3.21 -27.67 -0.09 0.59 16 21 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.15 -0.95 5.46 -26.48 -0.14 -1.10 16 23 C -0.08 -0.46 5.86 -27.81 -0.16 -0.62 16 24 C -0.16 -1.38 5.75 -104.44 -0.60 -1.98 16 25 C -0.08 -0.61 9.67 -39.53 -0.38 -0.99 16 26 C -0.15 -1.07 10.04 -39.61 -0.40 -1.47 16 27 C -0.09 -0.66 10.04 -39.66 -0.40 -1.06 16 28 C -0.14 -1.38 9.94 -39.34 -0.39 -1.77 16 29 C 0.13 1.40 6.47 -39.20 -0.25 1.14 16 30 O -0.29 -3.46 9.47 -39.06 -0.37 -3.83 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.40 2.37 8.40 -40.82 -0.34 2.03 16 45 H 0.09 0.38 7.91 -51.93 -0.41 -0.03 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 50 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 51 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 52 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 423.90 15.07 6.39 6.39 Total: -1.00 -35.49 423.90 -11.50 -47.00 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -9.02 Total: 5.30 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.40 Total: -10.79 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.15 Total: -53.55 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.60 Total: -11.99 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.49 -11.50 -47.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175767163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.911 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds