Wall clock time and date at job start Sat Apr 11 2020 08:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47201 * 2 1 4 4 C 1.53006 * 109.46737 * 119.99281 * 2 1 3 5 5 C 1.53008 * 109.46807 * 184.99734 * 4 2 1 6 6 C 1.52996 * 109.46808 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47237 * 179.97438 * 7 6 5 9 9 C 1.36939 * 120.00073 * 179.72302 * 8 7 6 10 10 H 1.08004 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99849 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00455 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47227 * 89.99498 * 13 11 9 15 15 H 1.48496 * 109.47434 * 209.99930 * 13 11 9 16 16 H 1.48507 * 109.46769 * 330.00032 * 13 11 9 17 17 N 1.46493 * 109.47395 * 239.99747 * 2 1 3 18 18 C 1.34775 * 120.00428 * 84.99626 * 17 2 1 19 19 O 1.21278 * 119.99599 * 0.02562 * 18 17 2 20 20 C 1.50693 * 120.00334 * 179.97438 * 18 17 2 21 21 H 1.08998 * 109.68272 * 305.00900 * 20 18 17 22 22 C 1.53411 * 109.67956 * 65.52535 * 20 18 17 23 23 C 1.53077 * 108.29956 * 184.42843 * 22 20 18 24 24 C 1.50772 * 109.67954 * 311.79404 * 23 22 20 25 25 C 1.38509 * 118.76255 * 197.82384 * 24 23 22 26 26 C 1.38105 * 120.31485 * 180.15519 * 25 24 23 27 27 C 1.38286 * 119.98242 * 0.02948 * 26 25 24 28 28 C 1.37975 * 119.96180 * 359.91623 * 27 26 25 29 29 C 1.38367 * 121.40509 * 17.84256 * 24 23 22 30 30 O 1.35858 * 121.81984 * 359.52422 * 29 24 23 31 31 H 1.09002 * 109.47039 * 60.00434 * 1 2 3 32 32 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47184 * 300.00470 * 1 2 3 34 34 H 1.08996 * 109.46626 * 65.00428 * 4 2 1 35 35 H 1.08994 * 109.47559 * 305.00151 * 4 2 1 36 36 H 1.09000 * 109.46719 * 60.00443 * 5 4 2 37 37 H 1.08994 * 109.47402 * 300.00513 * 5 4 2 38 38 H 1.09000 * 109.47441 * 60.00491 * 6 5 4 39 39 H 1.09002 * 109.47087 * 299.99937 * 6 5 4 40 40 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 41 41 H 1.08998 * 109.47454 * 300.00107 * 7 6 5 42 42 H 0.97005 * 119.99811 * 0.02562 * 8 7 6 43 43 H 0.97000 * 120.00679 * 179.97438 * 12 11 9 44 44 H 0.97008 * 119.99462 * 265.00524 * 17 2 1 45 45 H 1.09002 * 109.70099 * 304.12689 * 22 20 18 46 46 H 1.08998 * 109.69974 * 64.69065 * 22 20 18 47 47 H 1.09002 * 109.43457 * 71.85195 * 23 22 20 48 48 H 1.08998 * 109.44027 * 191.77002 * 23 22 20 49 49 H 1.07998 * 119.84026 * 0.14208 * 25 24 23 50 50 H 1.07999 * 120.00956 * 180.02562 * 26 25 24 51 51 H 1.08003 * 120.01908 * 179.89481 * 27 26 25 52 52 H 1.07997 * 119.89106 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3349 2.5628 7 6 5.5995 -1.2264 2.6276 8 7 6.0878 -1.9169 3.8239 9 6 7.4303 -1.9577 4.0909 10 1 8.1291 -1.4805 3.4197 11 6 7.8930 -2.6124 5.2240 12 7 7.0414 -3.1935 6.0423 13 14 9.7242 -2.6675 5.5887 14 1 10.0996 -1.4933 6.4168 15 1 10.0449 -3.9160 6.3259 16 1 10.4840 -2.6367 4.3131 17 7 2.0183 -0.6906 -1.1961 18 6 2.1470 -0.0184 -2.3571 19 8 1.8590 1.1584 -2.4115 20 6 2.6500 -0.7287 -3.5873 21 1 3.6104 -1.1977 -3.3736 22 6 1.6371 -1.7979 -4.0169 23 6 2.2276 -2.5724 -5.1978 24 6 2.7607 -1.6049 -6.2240 25 6 2.9924 -2.0596 -7.5116 26 6 3.4833 -1.2017 -8.4761 27 6 3.7465 0.1180 -8.1578 28 6 3.5166 0.5770 -6.8771 29 6 3.0198 -0.2841 -5.9034 30 8 2.7987 0.2069 -4.6561 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.7515 -1.7714 1.2058 35 1 1.6053 -0.2616 2.1370 36 1 3.8531 0.4370 1.3574 37 1 3.9994 -1.0728 0.4262 38 1 3.7864 -2.3851 2.5189 39 1 3.6401 -0.8756 3.4507 40 1 5.8876 -0.1761 2.6718 41 1 6.0345 -1.6854 1.7398 42 1 5.4605 -2.3490 4.4246 43 1 7.3647 -3.6513 6.8340 44 1 2.2490 -1.6319 -1.1524 45 1 1.4488 -2.4798 -3.1877 46 1 0.7050 -1.3206 -4.3191 47 1 3.0384 -3.2096 -4.8446 48 1 1.4521 -3.1899 -5.6509 49 1 2.7883 -3.0901 -7.7625 50 1 3.6618 -1.5614 -9.4787 51 1 4.1320 0.7891 -8.9111 52 1 3.7229 1.6078 -6.6296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175767163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:35 Heat of formation + Delta-G solvation = -83.878052 kcal Electronic energy + Delta-G solvation = -29442.918512 eV Core-core repulsion = 25405.860418 eV Total energy + Delta-G solvation = -4037.058094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -42.03709 -40.66429 -38.52648 -37.88374 -36.82184 -35.47766 -34.74784 -33.16671 -32.16735 -31.18331 -31.07469 -28.82290 -27.46036 -25.92119 -24.83843 -23.83329 -23.44725 -22.50765 -22.01459 -21.63590 -20.90226 -19.13385 -19.01656 -18.48626 -17.77088 -17.15421 -16.69432 -16.44912 -16.28814 -16.18459 -15.64882 -15.41128 -15.33931 -15.26757 -15.04303 -14.93147 -14.55076 -14.38053 -14.17686 -14.12214 -13.98561 -13.49155 -13.26132 -13.03609 -12.92799 -12.86787 -12.84268 -12.45979 -12.44924 -12.29818 -12.22868 -12.15878 -12.00455 -11.88745 -11.81859 -11.51033 -11.46624 -11.40006 -10.94550 -10.82361 -10.16532 -9.74506 -9.16019 -9.01842 -7.97208 -5.26385 0.35456 0.44083 1.42090 1.46108 1.48141 1.56239 1.56670 2.54656 2.57262 2.81235 3.35980 3.46181 3.48107 3.61556 3.73667 3.79203 3.88278 4.02489 4.05802 4.13567 4.17318 4.23642 4.32844 4.35380 4.41041 4.48148 4.58829 4.60606 4.61773 4.65138 4.76748 4.85009 4.87940 4.92600 4.94541 4.99072 5.00963 5.02260 5.10598 5.12794 5.27380 5.32034 5.32950 5.42112 5.45593 5.50667 5.53215 5.55008 5.59016 5.84563 6.25801 6.34622 6.51008 7.12969 7.31539 8.08296 8.31772 9.26223 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.001827 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.599259 B =15324.962058 C =16945.130473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.270 1.270 17 N -0.701 5.701 18 C 0.522 3.478 19 O -0.570 6.570 20 C 0.070 3.930 21 H 0.115 0.885 22 C -0.141 4.141 23 C -0.075 4.075 24 C -0.171 4.171 25 C -0.088 4.088 26 C -0.154 4.154 27 C -0.092 4.092 28 C -0.170 4.170 29 C 0.103 3.897 30 O -0.322 6.322 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.011 0.989 41 H 0.018 0.982 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.417 0.583 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.151 0.849 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.200 -0.255 -29.130 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.195 1.195 17 N -0.355 5.355 18 C 0.307 3.693 19 O -0.448 6.448 20 C 0.011 3.989 21 H 0.132 0.868 22 C -0.178 4.178 23 C -0.111 4.111 24 C -0.172 4.172 25 C -0.106 4.106 26 C -0.172 4.172 27 C -0.110 4.110 28 C -0.189 4.189 29 C 0.059 3.941 30 O -0.236 6.236 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.255 0.745 45 H 0.140 0.860 46 H 0.088 0.912 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.169 0.831 50 H 0.167 0.833 51 H 0.166 0.834 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.249 0.828 -29.131 33.367 hybrid contribution 1.045 -0.226 0.815 1.345 sum -15.204 0.602 -28.316 32.145 Atomic orbital electron populations 1.22117 0.94086 1.03191 1.02155 1.21011 0.94634 0.96667 0.83628 0.91683 1.21846 0.94566 1.02254 0.96606 1.21445 0.95946 1.00076 0.97037 1.21594 0.93586 1.01080 0.98699 1.20870 0.94407 0.94180 0.88484 1.42624 1.04465 1.65358 1.26678 1.19650 0.85341 1.27816 1.05424 0.90954 1.25602 1.02243 1.01220 0.97794 1.69811 1.34637 1.41973 1.15459 0.85119 0.79883 0.76730 0.77899 1.21403 1.21824 1.19474 1.45852 1.66523 1.14780 1.08323 1.20295 0.77402 0.86712 0.84859 1.90721 1.50896 1.17815 1.85396 1.22415 1.01914 0.89678 0.84896 0.86798 1.22218 0.97359 0.97148 1.01099 1.20598 1.01920 0.95970 0.92627 1.20177 1.05528 0.93590 0.97890 1.21280 0.97114 1.01005 0.91201 1.21428 1.01380 0.93554 1.00861 1.21238 0.97970 0.96841 0.94938 1.20832 1.04130 1.00312 0.93615 1.19061 0.97430 0.93462 0.84155 1.86022 1.87331 1.35766 1.14522 0.94118 0.90528 0.90492 0.89169 0.89427 0.92904 0.91420 0.91550 0.92466 0.97144 0.96370 0.79365 0.93890 0.74510 0.86047 0.91178 0.88231 0.87409 0.83084 0.83291 0.83368 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.49 2.57 44.99 0.12 2.61 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.48 16 4 C -0.11 -1.82 4.75 30.60 0.15 -1.67 16 5 C -0.11 -2.35 5.10 30.60 0.16 -2.19 16 6 C -0.11 -3.30 5.33 30.59 0.16 -3.14 16 7 C 0.15 5.92 6.26 86.38 0.54 6.46 16 8 N -0.75 -38.92 5.60 -343.44 -1.92 -40.84 16 9 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 10 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 12 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 13 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 N -0.70 -10.88 4.48 -442.55 -1.98 -12.86 16 18 C 0.52 11.57 7.15 87.65 0.63 12.19 16 19 O -0.57 -18.57 16.18 15.87 0.26 -18.31 16 20 C 0.07 1.27 3.21 29.98 0.10 1.37 16 21 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 22 C -0.14 -1.58 5.46 30.76 0.17 -1.41 16 23 C -0.07 -0.70 5.86 29.90 0.18 -0.53 16 24 C -0.17 -2.68 5.75 -19.75 -0.11 -2.79 16 25 C -0.09 -1.08 9.67 22.30 0.22 -0.86 16 26 C -0.15 -1.87 10.04 22.25 0.22 -1.65 16 27 C -0.09 -1.35 10.04 22.22 0.22 -1.13 16 28 C -0.17 -3.44 9.94 22.43 0.22 -3.22 16 29 C 0.10 2.24 6.47 22.52 0.15 2.38 16 30 O -0.32 -8.21 9.47 -73.05 -0.69 -8.91 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.39 7.75 -2.39 -0.02 1.37 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.37 20.40 7.67 -92.70 -0.71 19.69 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.42 3.80 8.40 -92.70 -0.78 3.03 16 45 H 0.12 0.60 7.91 -2.39 -0.02 0.58 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 50 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 51 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 52 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -79.26 423.90 2.48 -76.78 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.58 Total: 27.64 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.09 Total: -12.75 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.62 Total: -112.98 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.43 Total: -27.22 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.26 2.48 -76.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175767163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.095 kcal (2) G-P(sol) polarization free energy of solvation -79.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds