Wall clock time and date at job start Sat Apr 11 2020 08:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47002 * 179.97438 * 20 18 17 22 22 C 1.38261 * 119.97758 * 269.72335 * 21 20 18 23 23 C 1.38292 * 120.04199 * 179.78300 * 22 21 20 24 24 C 1.37974 * 119.91532 * 0.47280 * 23 22 21 25 25 C 1.38598 * 120.03844 * 359.78373 * 24 23 22 26 26 C 1.37960 * 120.03869 * 359.97438 * 25 24 23 27 27 C 1.51085 * 107.27030 * 179.97438 * 25 24 23 28 28 O 1.43947 * 105.95630 * 17.68936 * 27 25 24 29 29 C 1.43940 * 104.94782 * 331.55140 * 28 27 25 30 30 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 32 32 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 33 33 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 34 34 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 39 39 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 43 43 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 44 44 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 45 45 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 46 46 H 1.08000 * 119.98238 * 0.02562 * 22 21 20 47 47 H 1.08000 * 120.04647 * 180.25012 * 23 22 21 48 48 H 1.08004 * 120.03570 * 180.02562 * 26 25 24 49 49 H 1.08999 * 110.15342 * 136.80565 * 27 25 24 50 50 H 1.08994 * 110.15564 * 258.56685 * 27 25 24 51 51 H 1.09002 * 110.15549 * 147.57227 * 29 28 27 52 52 H 1.09004 * 110.15487 * 269.25364 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.2348 -1.2697 5.7470 15 1 9.9550 -3.4093 6.8541 16 1 10.4352 -3.3270 4.4788 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 6 2.7001 0.2394 -4.7412 22 6 1.6005 0.3888 -5.5658 23 6 1.6433 1.2800 -6.6224 24 6 2.7883 2.0128 -6.8584 25 6 3.8925 1.8591 -6.0350 26 6 3.8478 0.9736 -4.9780 27 6 4.9685 2.7865 -6.5497 28 8 4.2982 3.7400 -7.3944 29 6 3.1495 3.0397 -7.9062 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.7516 -1.7713 1.2058 34 1 1.6053 -0.2615 2.1370 35 1 3.8530 0.4372 1.3574 36 1 3.9994 -1.0727 0.4262 37 1 3.6401 -0.8755 3.4507 38 1 3.7865 -2.3850 2.5188 39 1 6.0345 -1.6850 1.7398 40 1 5.8874 -0.1758 2.6719 41 1 5.4606 -2.3487 4.4245 42 1 7.3646 -3.6493 6.8350 43 1 2.2492 -1.6318 -1.1524 44 1 3.6494 -1.1205 -3.3977 45 1 1.9780 -1.5510 -3.8323 46 1 0.7060 -0.1880 -5.3824 47 1 0.7830 1.3997 -7.2641 48 1 4.7082 0.8541 -4.3361 49 1 5.4533 3.2974 -5.7178 50 1 5.7036 2.2254 -7.1265 51 1 2.3216 3.7332 -8.0534 52 1 3.3980 2.5472 -8.8463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176334255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:03 Heat of formation + Delta-G solvation = -61.550363 kcal Electronic energy + Delta-G solvation = -28920.170487 eV Core-core repulsion = 24884.080594 eV Total energy + Delta-G solvation = -4036.089893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.09905 -40.06269 -37.96450 -36.89339 -35.26109 -33.39025 -33.12358 -31.86910 -31.56621 -30.35161 -29.09790 -27.53431 -27.45538 -24.73183 -24.18598 -22.47220 -22.10036 -21.65702 -20.83609 -20.65754 -20.47302 -17.38369 -17.04627 -17.01331 -16.78644 -16.63097 -16.36249 -15.65558 -15.22539 -14.99412 -14.71768 -14.64761 -14.13721 -14.09871 -13.93915 -13.60473 -13.45905 -13.22945 -13.08666 -12.99479 -12.94736 -12.89823 -12.41802 -12.26996 -12.24416 -11.79100 -11.74743 -11.47430 -11.27296 -11.23709 -11.00518 -10.79952 -10.72081 -10.45886 -10.44422 -10.32004 -10.06053 -10.00580 -9.66612 -9.24882 -9.19260 -8.85523 -8.81386 -6.90526 -5.75395 -3.03909 0.81895 0.99059 2.43590 2.89304 3.37262 3.44536 3.48552 3.49900 3.54115 3.79017 4.22323 4.30030 4.46790 4.54060 4.61728 4.71863 4.74995 4.89559 4.92904 4.96164 4.97782 4.99832 5.04088 5.10654 5.14967 5.23707 5.32240 5.39244 5.43272 5.51834 5.54430 5.60523 5.67680 5.68218 5.77314 5.88080 5.92556 5.93271 5.93762 6.08614 6.14581 6.21298 6.29251 6.31653 6.37111 6.38299 6.45471 6.54826 6.88765 6.92799 7.29102 7.70267 8.03003 8.43968 9.54592 10.13835 10.48373 11.47572 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.001710 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.336847 B =16366.128625 C =18294.419174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.723 5.723 18 C 0.515 3.485 19 O -0.532 6.532 20 C -0.105 4.105 21 C -0.057 4.057 22 C -0.100 4.100 23 C -0.092 4.092 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.077 4.077 27 C 0.091 3.909 28 O -0.362 6.362 29 C 0.091 3.909 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.401 0.599 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 6.236 -28.019 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.376 5.376 18 C 0.300 3.700 19 O -0.408 6.408 20 C -0.145 4.145 21 C -0.057 4.057 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.095 4.095 27 C 0.014 3.986 28 O -0.280 6.280 29 C 0.015 3.985 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.235 0.765 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.117 0.883 50 H 0.096 0.904 51 H 0.114 0.886 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.566 7.353 -28.096 32.951 hybrid contribution 0.830 -0.975 0.646 1.434 sum -14.736 6.379 -27.450 31.802 Atomic orbital electron populations 1.22170 0.95449 1.02012 1.02455 1.21036 0.93687 0.97727 0.83893 0.89413 1.21939 0.96881 1.00919 0.96741 1.21514 0.93948 1.01075 0.98619 1.21730 0.97258 1.00250 0.97124 1.20644 0.90999 0.95319 0.90547 1.42378 1.05323 1.64964 1.25204 1.19211 0.83936 1.28499 1.05476 0.91291 1.24746 0.97735 1.00962 0.97682 1.69649 1.32861 1.40728 1.15114 0.86253 0.85100 0.77485 0.77269 1.21266 1.21661 1.21286 1.46127 1.67588 1.14156 1.09690 1.20460 0.77764 0.87427 0.84313 1.90740 1.49350 1.15847 1.84877 1.20702 1.04470 0.97957 0.91339 1.19209 0.93902 0.97247 0.95377 1.20942 0.97749 0.98406 0.94720 1.20306 0.96604 0.96027 0.98041 1.21031 0.95198 0.99411 0.97933 1.20960 0.96432 0.98874 0.96792 1.20213 0.98167 0.95161 0.95964 1.21763 0.93097 0.89505 0.94199 1.89091 1.39142 1.35237 1.64550 1.21737 0.89258 0.92935 0.94561 0.92509 0.91551 0.92353 0.91339 0.90240 0.92025 0.92157 0.92061 0.92129 0.96670 0.96603 0.78352 0.93496 0.76477 0.87525 0.87717 0.85595 0.85685 0.85648 0.88331 0.90418 0.88569 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.31 2.57 -67.94 -0.17 1.14 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.19 4.75 -26.73 -0.13 -1.32 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.48 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.15 3.11 6.26 -4.05 -0.03 3.08 16 8 N -0.73 -19.09 5.60 -59.91 -0.34 -19.43 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 13 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.72 -5.93 4.53 -53.81 -0.24 -6.17 16 18 C 0.51 5.04 7.79 -10.98 -0.09 4.96 16 19 O -0.53 -7.52 15.70 5.56 0.09 -7.43 16 20 C -0.10 -0.71 5.83 -29.03 -0.17 -0.88 16 21 C -0.06 -0.50 4.38 -104.59 -0.46 -0.96 16 22 C -0.10 -0.83 9.70 -39.55 -0.38 -1.21 16 23 C -0.09 -0.75 10.04 -39.66 -0.40 -1.14 16 24 C -0.14 -1.22 6.32 -104.40 -0.66 -1.88 16 25 C -0.13 -1.25 6.32 -104.40 -0.66 -1.91 16 26 C -0.08 -0.72 9.70 -39.66 -0.38 -1.11 16 27 C 0.09 0.76 7.63 36.19 0.28 1.04 16 28 O -0.36 -3.62 11.72 -35.23 -0.41 -4.03 16 29 C 0.09 0.71 7.63 36.19 0.28 0.98 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.38 7.67 -40.82 -0.31 10.06 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.40 2.37 8.60 -40.82 -0.35 2.02 16 44 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 427.89 15.07 6.45 6.45 Total: -1.00 -35.65 427.89 -10.94 -46.59 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -9.03 Total: 5.68 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.15 Total: -11.41 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.15 Total: -53.45 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.33 Total: -11.46 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -35.65 -10.94 -46.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176334255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.960 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds