Wall clock time and date at job start Sat Apr 11 2020 08:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47299 * 179.97438 * 7 6 5 9 9 C 1.36936 * 120.00253 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99879 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00059 * 179.97438 * 9 8 7 12 12 N 1.31613 * 119.99934 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99909 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47177 * 89.99769 * 13 11 9 15 15 H 1.48498 * 109.47028 * 209.99691 * 13 11 9 16 16 H 1.48505 * 109.47036 * 329.99484 * 13 11 9 17 17 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 18 18 C 1.34775 * 120.00290 * 275.00553 * 17 2 1 19 19 O 1.21284 * 120.00239 * 359.97438 * 18 17 2 20 20 C 1.50707 * 119.99766 * 179.97438 * 18 17 2 21 21 C 1.50706 * 109.46782 * 179.97438 * 20 18 17 22 22 C 1.38261 * 119.98035 * 269.72262 * 21 20 18 23 23 C 1.38291 * 120.04059 * 179.78910 * 22 21 20 24 24 C 1.37964 * 119.91931 * 0.47057 * 23 22 21 25 25 C 1.38600 * 120.03836 * 359.78620 * 24 23 22 26 26 C 1.37966 * 120.04090 * 359.97424 * 25 24 23 27 27 C 1.51086 * 107.27208 * 179.97438 * 25 24 23 28 28 O 1.43947 * 105.95730 * 17.68328 * 27 25 24 29 29 C 1.43936 * 104.94780 * 331.55894 * 28 27 25 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 33 33 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 34 34 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 38 38 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 39 39 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 40 40 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 41 41 H 0.97003 * 119.99983 * 359.97438 * 8 7 6 42 42 H 0.97005 * 120.00080 * 180.02562 * 12 11 9 43 43 H 0.97003 * 119.99849 * 95.00425 * 17 2 1 44 44 H 1.08993 * 109.47314 * 299.99790 * 20 18 17 45 45 H 1.08997 * 109.47088 * 60.00406 * 20 18 17 46 46 H 1.08005 * 119.97937 * 0.02562 * 22 21 20 47 47 H 1.08008 * 120.04032 * 180.25521 * 23 22 21 48 48 H 1.07998 * 120.03945 * 180.02562 * 26 25 24 49 49 H 1.08997 * 110.15472 * 136.80941 * 27 25 24 50 50 H 1.09000 * 110.15180 * 258.56395 * 27 25 24 51 51 H 1.09006 * 110.15512 * 147.56953 * 29 28 27 52 52 H 1.09003 * 110.15848 * 269.24667 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 5.5998 -1.2263 -2.6272 8 7 6.0882 -1.9168 -3.8233 9 6 7.4303 -1.9531 -4.0929 10 1 8.1287 -1.4730 -3.4236 11 6 7.8931 -2.6079 -5.2261 12 7 9.1831 -2.6432 -5.4849 13 14 6.6851 -3.4389 -6.3835 14 1 6.2504 -2.4718 -7.4231 15 1 7.3418 -4.6018 -7.0329 16 1 5.5028 -3.9040 -5.6145 17 7 2.0183 -0.6905 1.1962 18 6 2.1469 -0.0182 2.3572 19 8 1.8588 1.1587 2.4115 20 6 2.6487 -0.7288 3.5878 21 6 2.7000 0.2398 4.7413 22 6 3.8505 0.9680 4.9813 23 6 3.8975 1.8604 6.0368 24 6 2.7982 2.0159 6.8558 25 6 1.6467 1.2820 6.6183 26 6 1.5981 0.3954 5.5624 27 6 0.6394 1.6737 7.6741 28 8 1.1061 2.9197 8.2235 29 6 2.5363 2.8826 8.0653 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7714 -1.2056 35 1 3.9995 -1.0726 -0.4258 36 1 3.8532 0.4372 -1.3572 37 1 3.7866 -2.3841 -2.5200 38 1 3.6403 -0.8740 -3.4506 39 1 5.8885 -0.1761 -2.6702 40 1 6.0341 -1.6864 -1.7396 41 1 5.4610 -2.3484 -4.4244 42 1 9.5065 -3.1004 -6.2770 43 1 2.2490 -1.6317 1.1527 44 1 1.9758 -1.5505 3.8326 45 1 3.6478 -1.1212 3.3987 46 1 4.7118 0.8427 4.3418 47 1 4.7948 2.4323 6.2218 48 1 0.7007 -0.1761 5.3771 49 1 -0.3442 1.8068 7.2238 50 1 0.5966 0.9124 8.4531 51 1 2.9218 3.8883 7.8973 52 1 3.0008 2.4458 8.9493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176334259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:13 Heat of formation + Delta-G solvation = -57.486744 kcal Electronic energy + Delta-G solvation = -28912.482520 eV Core-core repulsion = 24876.568839 eV Total energy + Delta-G solvation = -4035.913681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.12202 -40.10001 -37.99539 -36.97096 -35.44199 -33.43679 -33.16150 -31.88991 -31.64400 -30.67058 -29.13084 -27.79717 -27.56199 -24.76684 -24.19661 -22.32264 -22.12370 -21.54946 -20.95668 -20.78640 -20.50205 -17.55905 -17.37140 -17.08486 -16.80153 -16.66929 -16.33931 -15.82002 -15.29662 -14.94554 -14.68413 -14.60124 -14.32516 -14.24714 -13.95146 -13.66097 -13.50088 -13.41158 -13.15387 -13.02923 -12.94539 -12.77596 -12.48721 -12.31758 -12.26291 -11.94268 -11.76922 -11.67640 -11.48570 -11.25502 -11.18711 -10.91211 -10.86148 -10.49056 -10.44185 -10.35957 -10.12142 -10.07783 -9.59440 -9.29963 -9.20731 -8.89504 -8.82763 -7.22830 -5.77101 -3.12366 0.80907 0.97767 2.40425 2.85968 3.35470 3.36232 3.39078 3.44105 3.50499 3.76529 4.20193 4.29552 4.41887 4.51258 4.58633 4.64217 4.75091 4.82729 4.88622 4.90152 4.94196 4.96197 5.06205 5.07452 5.11760 5.15944 5.28816 5.29419 5.32449 5.46586 5.50068 5.52802 5.56366 5.63406 5.66441 5.79892 5.83859 5.89821 5.93169 5.99934 6.05022 6.12029 6.14145 6.15648 6.28899 6.31167 6.33958 6.53817 6.75742 6.79727 7.24997 7.99515 7.99856 8.42183 9.21689 9.94177 10.14419 11.41435 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.001591 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.970181 B =17591.270625 C =18760.126899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.724 5.724 18 C 0.515 3.485 19 O -0.532 6.532 20 C -0.105 4.105 21 C -0.058 4.058 22 C -0.098 4.098 23 C -0.090 4.090 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.078 4.078 27 C 0.092 3.908 28 O -0.362 6.362 29 C 0.091 3.909 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.097 0.903 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.516 5.126 26.993 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.376 5.376 18 C 0.301 3.699 19 O -0.407 6.407 20 C -0.144 4.144 21 C -0.058 4.058 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.096 4.096 27 C 0.016 3.984 28 O -0.281 6.281 29 C 0.015 3.985 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.235 0.765 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.115 0.885 50 H 0.095 0.905 51 H 0.115 0.885 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.610 6.207 27.146 34.644 hybrid contribution -0.432 -1.343 -1.175 1.836 sum -21.042 4.863 25.971 33.778 Atomic orbital electron populations 1.22171 0.95440 1.02003 1.02495 1.21025 0.93697 0.97755 0.83857 0.89355 1.21938 0.96822 1.00909 0.96836 1.21507 0.93988 1.01218 0.98473 1.21780 0.97293 1.00270 0.97421 1.20628 0.90756 0.95712 0.89985 1.42736 1.05268 1.66117 1.26233 1.19090 0.82332 1.29302 1.06760 0.89281 1.24687 0.95628 1.00709 0.98274 1.69705 1.11716 1.48318 1.28560 0.86516 0.80867 0.79453 0.81500 1.21081 1.21712 1.20389 1.46123 1.67669 1.14143 1.09693 1.20471 0.77725 0.87433 0.84310 1.90744 1.49295 1.15837 1.84875 1.20700 1.04495 0.97948 0.91303 1.19209 0.93860 0.97530 0.95225 1.21012 0.97937 0.95511 0.97105 1.20346 0.97519 0.98520 0.94423 1.21023 0.95194 0.99399 0.97886 1.20946 0.96677 0.98321 0.97405 1.20146 0.97961 0.98034 0.93504 1.21736 0.96983 0.86515 0.93199 1.89085 1.19638 1.37379 1.81965 1.21747 0.82321 1.00057 0.94389 0.92531 0.92294 0.91569 0.90274 0.91375 0.91946 0.91812 0.92189 0.92098 0.95702 0.95824 0.80743 0.93078 0.76490 0.87793 0.87429 0.85305 0.85526 0.85926 0.88529 0.90536 0.88483 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.24 2.57 -67.94 -0.17 1.06 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.09 4.75 -26.74 -0.13 -1.22 16 5 C -0.11 -1.25 5.10 -26.73 -0.14 -1.39 16 6 C -0.13 -1.85 5.33 -26.73 -0.14 -1.99 16 7 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 8 N -0.76 -18.32 5.41 -59.91 -0.32 -18.64 16 9 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 11 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 12 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 13 Si 0.89 22.20 27.74 -169.99 -4.71 17.48 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 17 N -0.72 -5.61 4.53 -53.81 -0.24 -5.86 16 18 C 0.51 4.88 7.79 -10.98 -0.09 4.80 16 19 O -0.53 -7.37 15.70 5.55 0.09 -7.28 16 20 C -0.10 -0.68 5.83 -29.03 -0.17 -0.85 16 21 C -0.06 -0.50 4.38 -104.59 -0.46 -0.96 16 22 C -0.10 -0.86 9.70 -39.55 -0.38 -1.24 16 23 C -0.09 -0.77 10.04 -39.66 -0.40 -1.16 16 24 C -0.13 -1.21 6.32 -104.40 -0.66 -1.87 16 25 C -0.13 -1.20 6.32 -104.40 -0.66 -1.86 16 26 C -0.08 -0.68 9.70 -39.66 -0.38 -1.06 16 27 C 0.09 0.70 7.63 36.19 0.28 0.98 16 28 O -0.36 -3.44 11.72 -35.23 -0.41 -3.85 16 29 C 0.09 0.69 7.63 36.19 0.28 0.97 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.66 7.75 -51.93 -0.40 0.25 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.36 8.42 5.53 -40.82 -0.23 8.19 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.40 2.18 8.60 -40.82 -0.35 1.83 16 44 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 46 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 424.77 15.07 6.40 6.40 Total: -1.00 -36.42 424.77 -10.58 -47.00 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.99 Total: 4.62 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.15 Total: -11.03 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.21 Total: -53.34 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.33 Total: -11.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -36.42 -10.58 -47.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176334259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.490 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds