Wall clock time and date at job start Sat Apr 11 2020 08:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47299 * 179.97438 * 7 6 5 9 9 C 1.36936 * 120.00253 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99879 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00059 * 179.97438 * 9 8 7 12 12 N 1.31613 * 119.99934 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99909 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47177 * 89.99769 * 13 11 9 15 15 H 1.48498 * 109.47028 * 209.99691 * 13 11 9 16 16 H 1.48505 * 109.47036 * 329.99484 * 13 11 9 17 17 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 18 18 C 1.34775 * 120.00290 * 275.00553 * 17 2 1 19 19 O 1.21284 * 120.00239 * 359.97438 * 18 17 2 20 20 C 1.50707 * 119.99766 * 179.97438 * 18 17 2 21 21 C 1.50706 * 109.46782 * 179.97438 * 20 18 17 22 22 C 1.38261 * 119.98035 * 269.72262 * 21 20 18 23 23 C 1.38291 * 120.04059 * 179.78910 * 22 21 20 24 24 C 1.37964 * 119.91931 * 0.47057 * 23 22 21 25 25 C 1.38600 * 120.03836 * 359.78620 * 24 23 22 26 26 C 1.37966 * 120.04090 * 359.97424 * 25 24 23 27 27 C 1.51086 * 107.27208 * 179.97438 * 25 24 23 28 28 O 1.43947 * 105.95730 * 17.68328 * 27 25 24 29 29 C 1.43936 * 104.94780 * 331.55894 * 28 27 25 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 33 33 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 34 34 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 38 38 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 39 39 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 40 40 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 41 41 H 0.97003 * 119.99983 * 359.97438 * 8 7 6 42 42 H 0.97005 * 120.00080 * 180.02562 * 12 11 9 43 43 H 0.97003 * 119.99849 * 95.00425 * 17 2 1 44 44 H 1.08993 * 109.47314 * 299.99790 * 20 18 17 45 45 H 1.08997 * 109.47088 * 60.00406 * 20 18 17 46 46 H 1.08005 * 119.97937 * 0.02562 * 22 21 20 47 47 H 1.08008 * 120.04032 * 180.25521 * 23 22 21 48 48 H 1.07998 * 120.03945 * 180.02562 * 26 25 24 49 49 H 1.08997 * 110.15472 * 136.80941 * 27 25 24 50 50 H 1.09000 * 110.15180 * 258.56395 * 27 25 24 51 51 H 1.09006 * 110.15512 * 147.56953 * 29 28 27 52 52 H 1.09003 * 110.15848 * 269.24667 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0749 -1.3338 -2.5631 7 6 5.5998 -1.2263 -2.6272 8 7 6.0882 -1.9168 -3.8233 9 6 7.4303 -1.9531 -4.0929 10 1 8.1287 -1.4730 -3.4236 11 6 7.8931 -2.6079 -5.2261 12 7 9.1831 -2.6432 -5.4849 13 14 6.6851 -3.4389 -6.3835 14 1 6.2504 -2.4718 -7.4231 15 1 7.3418 -4.6018 -7.0329 16 1 5.5028 -3.9040 -5.6145 17 7 2.0183 -0.6905 1.1962 18 6 2.1469 -0.0182 2.3572 19 8 1.8588 1.1587 2.4115 20 6 2.6487 -0.7288 3.5878 21 6 2.7000 0.2398 4.7413 22 6 3.8505 0.9680 4.9813 23 6 3.8975 1.8604 6.0368 24 6 2.7982 2.0159 6.8558 25 6 1.6467 1.2820 6.6183 26 6 1.5981 0.3954 5.5624 27 6 0.6394 1.6737 7.6741 28 8 1.1061 2.9197 8.2235 29 6 2.5363 2.8826 8.0653 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7714 -1.2056 35 1 3.9995 -1.0726 -0.4258 36 1 3.8532 0.4372 -1.3572 37 1 3.7866 -2.3841 -2.5200 38 1 3.6403 -0.8740 -3.4506 39 1 5.8885 -0.1761 -2.6702 40 1 6.0341 -1.6864 -1.7396 41 1 5.4610 -2.3484 -4.4244 42 1 9.5065 -3.1004 -6.2770 43 1 2.2490 -1.6317 1.1527 44 1 1.9758 -1.5505 3.8326 45 1 3.6478 -1.1212 3.3987 46 1 4.7118 0.8427 4.3418 47 1 4.7948 2.4323 6.2218 48 1 0.7007 -0.1761 5.3771 49 1 -0.3442 1.8068 7.2238 50 1 0.5966 0.9124 8.4531 51 1 2.9218 3.8883 7.8973 52 1 3.0008 2.4458 8.9493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176334259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:08 Heat of formation + Delta-G solvation = -81.229980 kcal Electronic energy + Delta-G solvation = -28913.512104 eV Core-core repulsion = 24876.568839 eV Total energy + Delta-G solvation = -4036.943265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.72954 -40.81610 -38.64463 -37.93616 -36.89153 -34.76353 -33.93485 -33.15655 -32.48772 -31.86954 -29.73528 -29.04550 -28.14047 -25.82491 -25.25495 -23.60117 -22.71544 -22.62044 -22.12325 -21.57304 -21.16580 -19.61876 -18.09606 -17.69792 -17.39475 -17.34422 -16.98880 -16.63897 -16.45122 -16.28606 -15.84961 -15.64075 -15.23637 -15.03911 -14.87817 -14.73717 -14.58723 -14.30904 -14.13536 -14.07650 -13.74059 -13.58606 -13.49319 -13.08040 -12.96409 -12.92855 -12.87950 -12.86918 -12.48076 -12.33590 -12.24634 -12.06909 -11.88237 -11.83677 -11.76338 -11.50189 -11.42646 -11.12286 -10.97572 -10.83954 -10.02176 -9.82751 -9.43784 -9.31210 -8.04236 -5.38444 0.18127 0.35408 1.37474 1.42289 1.49849 1.70681 2.23020 2.48154 2.73819 2.92967 3.18419 3.26972 3.49770 3.62642 3.72787 3.89364 3.95531 4.01636 4.08349 4.12161 4.24995 4.34932 4.37047 4.39827 4.41276 4.42191 4.51544 4.58335 4.58816 4.62699 4.64413 4.73175 4.78495 4.88228 4.91833 4.94289 4.98768 5.03110 5.08036 5.14558 5.25764 5.29072 5.31654 5.32540 5.44931 5.51067 5.53250 5.64177 5.69082 5.73761 5.94518 6.19993 6.64046 7.06909 7.34571 7.83227 8.03402 9.17341 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.001591 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.970181 B =17591.270625 C =18760.126899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.760 5.760 9 C -0.243 4.243 10 H 0.052 0.948 11 C -0.067 4.067 12 N -0.985 5.985 13 Si 0.962 3.038 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.247 1.247 17 N -0.713 5.713 18 C 0.513 3.487 19 O -0.582 6.582 20 C -0.098 4.098 21 C -0.069 4.069 22 C -0.115 4.115 23 C -0.101 4.101 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.090 4.090 27 C 0.090 3.910 28 O -0.384 6.384 29 C 0.090 3.910 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.022 0.978 41 H 0.367 0.633 42 H 0.259 0.741 43 H 0.415 0.585 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 3.360 26.991 35.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.154 4.154 7 C 0.023 3.977 8 N -0.406 5.406 9 C -0.374 4.374 10 H 0.070 0.930 11 C -0.258 4.258 12 N -0.635 5.635 13 Si 0.788 3.212 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.171 1.171 17 N -0.366 5.366 18 C 0.300 3.700 19 O -0.462 6.462 20 C -0.138 4.138 21 C -0.069 4.069 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.107 4.107 27 C 0.014 3.986 28 O -0.304 6.304 29 C 0.014 3.986 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.252 0.748 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.155 0.845 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.122 0.878 50 H 0.113 0.887 51 H 0.123 0.877 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.141 4.420 27.172 35.963 hybrid contribution 0.425 -0.717 -1.107 1.385 sum -22.716 3.703 26.065 34.773 Atomic orbital electron populations 1.22105 0.94618 1.02840 1.01918 1.20912 0.94261 0.96587 0.84390 0.92051 1.21835 0.94619 1.02119 0.96769 1.21431 0.95845 1.00081 0.97159 1.21666 0.93113 1.01531 0.99101 1.20857 0.94467 0.94362 0.87975 1.42750 1.03469 1.66572 1.27847 1.19075 0.84114 1.28219 1.05990 0.93022 1.25609 0.97703 1.02030 1.00444 1.69901 1.14303 1.49845 1.29443 0.85314 0.79030 0.77937 0.78922 1.20400 1.22066 1.17136 1.46051 1.66805 1.14758 1.08984 1.20966 0.76821 0.86883 0.85294 1.90728 1.51652 1.18116 1.85684 1.20756 1.06179 0.97800 0.89028 1.19505 0.93745 0.97890 0.95796 1.21275 0.98605 0.95887 0.97491 1.20609 0.98159 0.98720 0.94390 1.21296 0.95470 0.99875 0.98553 1.21247 0.97175 0.98560 0.97936 1.20417 0.98625 0.98264 0.93442 1.21876 0.96876 0.86363 0.93442 1.89047 1.20679 1.38413 1.82212 1.21880 0.81654 1.00492 0.94597 0.90891 0.94173 0.90911 0.89707 0.89362 0.91291 0.93004 0.90976 0.91770 0.96748 0.96002 0.79943 0.93264 0.74752 0.84894 0.85471 0.84525 0.84041 0.84400 0.87844 0.88740 0.87730 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 71.98 0.68 -1.54 16 2 C 0.14 2.26 2.57 44.99 0.12 2.37 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.61 4.75 30.59 0.15 -1.47 16 5 C -0.11 -2.09 5.10 30.59 0.16 -1.93 16 6 C -0.12 -2.98 5.33 30.59 0.16 -2.82 16 7 C 0.15 5.57 6.26 86.38 0.54 6.11 16 8 N -0.76 -35.77 5.41 -343.45 -1.86 -37.62 16 9 C -0.24 -14.17 10.47 84.03 0.88 -13.29 16 10 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 11 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 12 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 13 Si 0.96 45.08 27.74 68.60 1.90 46.98 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.25 -10.23 6.52 99.48 0.65 -9.59 16 17 N -0.71 -9.48 4.53 -442.54 -2.00 -11.49 16 18 C 0.51 9.09 7.79 87.66 0.68 9.77 16 19 O -0.58 -16.23 15.70 -3.04 -0.05 -16.28 16 20 C -0.10 -1.09 5.83 29.11 0.17 -0.92 16 21 C -0.07 -1.14 4.38 -19.84 -0.09 -1.22 16 22 C -0.11 -1.99 9.70 22.29 0.22 -1.78 16 23 C -0.10 -1.72 10.04 22.22 0.22 -1.50 16 24 C -0.15 -2.71 6.32 -19.72 -0.12 -2.83 16 25 C -0.15 -2.64 6.32 -19.72 -0.12 -2.77 16 26 C -0.09 -1.49 9.70 22.22 0.22 -1.27 16 27 C 0.09 1.33 7.63 71.36 0.54 1.87 16 28 O -0.38 -7.20 11.72 -148.98 -1.75 -8.95 16 29 C 0.09 1.33 7.63 71.36 0.54 1.87 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.26 7.75 -2.39 -0.02 1.24 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.37 16.11 5.53 -92.71 -0.51 15.60 16 42 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 43 H 0.42 3.10 8.60 -92.71 -0.80 2.30 16 44 H 0.13 0.68 8.09 -2.39 -0.02 0.66 16 45 H 0.13 0.91 8.08 -2.39 -0.02 0.89 16 46 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 48 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.15 424.77 1.50 -79.65 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.46 Total: 25.85 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.41 Total: -14.82 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.56 Total: -112.45 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.79 Total: -25.22 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -81.15 1.50 -79.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176334259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -81.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds