Wall clock time and date at job start Sat Apr 11 2020 08:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46716 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46957 * 119.99830 * 13 11 9 16 16 H 1.48495 * 109.47337 * 239.99911 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 C 1.52990 * 109.47398 * 180.02562 * 20 18 17 22 22 H 1.09000 * 110.13576 * 306.70293 * 21 20 18 23 23 O 1.43945 * 110.15374 * 68.47508 * 21 20 18 24 24 C 1.43941 * 104.95194 * 147.56624 * 23 21 20 25 25 C 1.51074 * 105.95660 * 331.55534 * 24 23 21 26 26 C 1.37978 * 132.69268 * 197.71028 * 25 24 23 27 27 C 1.38289 * 119.92218 * 180.02562 * 26 25 24 28 28 C 1.38274 * 120.04238 * 359.95366 * 27 26 25 29 29 C 1.38292 * 120.03739 * 0.02562 * 28 27 26 30 30 C 1.37963 * 119.92215 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 34 34 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 35 35 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 36 36 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 37 37 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 38 38 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 39 39 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 40 40 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 41 41 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 42 42 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 43 43 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 44 44 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 45 45 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 46 46 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 47 47 H 1.09000 * 110.15562 * 212.42810 * 24 23 21 48 48 H 1.09007 * 110.21248 * 90.70675 * 24 23 21 49 49 H 1.08001 * 120.03388 * 0.02562 * 26 25 24 50 50 H 1.07995 * 119.98112 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.97695 * 179.97438 * 28 27 26 52 52 H 1.08005 * 120.04036 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.4618 -1.9279 4.5323 15 1 9.9817 -2.0093 6.9083 16 1 10.1818 -4.0665 5.6401 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 6 2.6849 0.2505 -4.7628 22 1 1.7177 0.7386 -4.8823 23 8 3.7144 1.2329 -4.5462 24 6 4.2024 1.5558 -5.8613 25 6 3.9841 0.3187 -6.7005 26 6 4.5096 -0.0987 -7.9061 27 6 4.1152 -1.3079 -8.4489 28 6 3.1962 -2.0984 -7.7837 29 6 2.6698 -1.6803 -6.5751 30 6 3.0624 -0.4734 -6.0341 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.9994 -1.0728 0.4259 37 1 3.8532 0.4369 1.3573 38 1 3.6402 -0.8742 3.4508 39 1 3.7865 -2.3844 2.5200 40 1 6.0345 -1.6853 1.7404 41 1 5.8876 -0.1753 2.6713 42 1 5.4606 -2.3478 4.4251 43 1 7.3647 -3.6484 6.8354 44 1 2.2490 -1.6318 -1.1527 45 1 3.6381 -1.1236 -3.4054 46 1 1.9643 -1.5536 -3.8314 47 1 5.2642 1.7983 -5.8188 48 1 3.6423 2.3942 -6.2755 49 1 5.2280 0.5184 -8.4253 50 1 4.5256 -1.6353 -9.3926 51 1 2.8886 -3.0424 -8.2087 52 1 1.9522 -2.2979 -6.0553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176374751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:37 Heat of formation + Delta-G solvation = -59.029201 kcal Electronic energy + Delta-G solvation = -29198.169069 eV Core-core repulsion = 25162.188502 eV Total energy + Delta-G solvation = -4035.980567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.25567 -39.82919 -37.74380 -36.88570 -35.21442 -33.31532 -33.04002 -31.69585 -31.57522 -30.54233 -29.92358 -27.41825 -26.60003 -24.74409 -24.13976 -22.41974 -21.99810 -21.60715 -20.78583 -20.61290 -20.40954 -17.75413 -17.04216 -16.95629 -16.61896 -16.56626 -16.01169 -15.82303 -15.31953 -14.91667 -14.73140 -14.58264 -14.17769 -13.95001 -13.87196 -13.60181 -13.41183 -13.23888 -13.12078 -12.96085 -12.90763 -12.61670 -12.48405 -12.33377 -12.05421 -11.74531 -11.67328 -11.41674 -11.31963 -11.22307 -10.96555 -10.80096 -10.67078 -10.37711 -10.33982 -10.26991 -9.95377 -9.92061 -9.64234 -9.35975 -9.15688 -9.00229 -8.83716 -6.87410 -5.73155 -3.01286 0.76718 0.86489 2.54659 2.99126 3.23244 3.45501 3.50959 3.51526 3.53498 3.76314 4.17990 4.39279 4.50192 4.54488 4.59143 4.65171 4.73171 4.87414 4.93594 4.96102 4.99332 5.03049 5.05459 5.11212 5.29410 5.30425 5.41277 5.45301 5.48162 5.50462 5.55187 5.57902 5.65739 5.73436 5.82435 5.89113 5.92413 5.95268 5.99056 5.99550 6.14332 6.27992 6.34690 6.38955 6.41856 6.45439 6.48882 6.50975 6.93539 6.97386 7.37897 7.74103 8.13077 8.46375 9.57074 10.16625 10.51249 11.50065 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.001829 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.130062 B =15307.785893 C =17131.732104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.018 4.018 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.724 5.724 18 C 0.516 3.484 19 O -0.531 6.531 20 C -0.140 4.140 21 C 0.140 3.860 22 H 0.092 0.908 23 O -0.339 6.339 24 C 0.087 3.913 25 C -0.127 4.127 26 C -0.095 4.095 27 C -0.115 4.115 28 C -0.116 4.116 29 C -0.091 4.091 30 C -0.128 4.128 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.400 0.600 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.126 0.874 50 H 0.128 0.872 51 H 0.128 0.872 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 3.976 -30.415 34.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.377 5.377 18 C 0.302 3.698 19 O -0.407 6.407 20 C -0.180 4.180 21 C 0.082 3.918 22 H 0.110 0.890 23 O -0.257 6.257 24 C 0.010 3.990 25 C -0.128 4.128 26 C -0.113 4.113 27 C -0.133 4.133 28 C -0.134 4.134 29 C -0.109 4.109 30 C -0.128 4.128 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.234 0.766 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.144 0.856 50 H 0.146 0.854 51 H 0.146 0.854 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.055 4.972 -30.243 34.147 hybrid contribution 0.925 -0.872 0.275 1.300 sum -14.131 4.101 -29.968 33.385 Atomic orbital electron populations 1.22170 0.95516 1.01953 1.02418 1.21027 0.93601 0.97795 0.83937 0.89372 1.21933 0.96883 1.00860 0.96755 1.21514 0.93958 1.01127 0.98590 1.21727 0.97231 1.00233 0.97132 1.20653 0.91041 0.95337 0.90524 1.42401 1.05342 1.64946 1.25213 1.19309 0.83957 1.28171 1.05365 0.91171 1.24756 0.97747 1.01067 0.97738 1.69674 1.32653 1.40929 1.15142 0.86102 0.85089 0.77194 0.77763 1.20558 1.21873 1.21886 1.46113 1.67766 1.14133 1.09667 1.20408 0.77484 0.87408 0.84512 1.90726 1.49281 1.15649 1.85009 1.21837 1.04548 0.98805 0.92842 1.21003 0.93075 0.87937 0.89775 0.89025 1.89254 1.53017 1.58860 1.24614 1.21793 1.01046 0.93870 0.82278 1.21126 0.98103 0.97256 0.96288 1.20435 0.99849 0.96616 0.94404 1.21173 0.97656 0.94367 1.00056 1.21167 0.97315 1.00010 0.94934 1.20436 1.00061 0.94618 0.95834 1.21044 0.98321 0.95878 0.97545 0.92348 0.92567 0.91588 0.90288 0.91407 0.92121 0.91990 0.92081 0.92167 0.96619 0.96544 0.78364 0.93624 0.76593 0.87677 0.87583 0.88411 0.90432 0.85631 0.85421 0.85366 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 4 C -0.13 -1.27 4.75 -26.73 -0.13 -1.40 16 5 C -0.11 -1.45 5.10 -26.73 -0.14 -1.59 16 6 C -0.13 -2.03 5.33 -26.73 -0.14 -2.17 16 7 C 0.15 3.20 6.26 -4.04 -0.03 3.17 16 8 N -0.74 -19.46 5.60 -59.91 -0.34 -19.79 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 11 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 12 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 13 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 N -0.72 -6.68 4.53 -53.81 -0.24 -6.93 16 18 C 0.52 5.66 7.71 -10.98 -0.08 5.57 16 19 O -0.53 -7.93 15.23 -3.42 -0.05 -7.98 16 20 C -0.14 -1.15 5.36 -27.89 -0.15 -1.30 16 21 C 0.14 1.35 2.84 -27.70 -0.08 1.27 16 22 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 23 O -0.34 -4.06 10.89 -44.21 -0.48 -4.54 16 24 C 0.09 0.76 7.63 36.19 0.28 1.03 16 25 C -0.13 -1.08 6.32 -104.40 -0.66 -1.74 16 26 C -0.09 -0.65 10.04 -39.66 -0.40 -1.05 16 27 C -0.11 -0.69 10.05 -39.55 -0.40 -1.09 16 28 C -0.12 -0.70 10.05 -39.55 -0.40 -1.10 16 29 C -0.09 -0.62 9.78 -39.66 -0.39 -1.01 16 30 C -0.13 -1.08 5.73 -104.40 -0.60 -1.67 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.76 7.75 -51.94 -0.40 0.35 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.40 2.80 8.60 -40.82 -0.35 2.45 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.11 0.54 7.82 -51.93 -0.41 0.14 16 47 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 50 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 51 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 52 H 0.13 0.58 7.86 -52.48 -0.41 0.17 16 LS Contribution 426.05 15.07 6.42 6.42 Total: -1.00 -35.92 426.05 -11.37 -47.29 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -9.00 Total: 6.41 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.38 Total: -10.57 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.15 Total: -54.92 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.53 Total: -12.52 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -35.92 -11.37 -47.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176374751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.744 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds