Wall clock time and date at job start Sat Apr 11 2020 08:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46716 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46957 * 119.99830 * 13 11 9 16 16 H 1.48495 * 109.47337 * 239.99911 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 C 1.52990 * 109.47398 * 180.02562 * 20 18 17 22 22 H 1.09000 * 110.13576 * 306.70293 * 21 20 18 23 23 O 1.43945 * 110.15374 * 68.47508 * 21 20 18 24 24 C 1.43941 * 104.95194 * 147.56624 * 23 21 20 25 25 C 1.51074 * 105.95660 * 331.55534 * 24 23 21 26 26 C 1.37978 * 132.69268 * 197.71028 * 25 24 23 27 27 C 1.38289 * 119.92218 * 180.02562 * 26 25 24 28 28 C 1.38274 * 120.04238 * 359.95366 * 27 26 25 29 29 C 1.38292 * 120.03739 * 0.02562 * 28 27 26 30 30 C 1.37963 * 119.92215 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 34 34 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 35 35 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 36 36 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 37 37 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 38 38 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 39 39 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 40 40 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 41 41 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 42 42 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 43 43 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 44 44 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 45 45 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 46 46 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 47 47 H 1.09000 * 110.15562 * 212.42810 * 24 23 21 48 48 H 1.09007 * 110.21248 * 90.70675 * 24 23 21 49 49 H 1.08001 * 120.03388 * 0.02562 * 26 25 24 50 50 H 1.07995 * 119.98112 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.97695 * 179.97438 * 28 27 26 52 52 H 1.08005 * 120.04036 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.4618 -1.9279 4.5323 15 1 9.9817 -2.0093 6.9083 16 1 10.1818 -4.0665 5.6401 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 6 2.6849 0.2505 -4.7628 22 1 1.7177 0.7386 -4.8823 23 8 3.7144 1.2329 -4.5462 24 6 4.2024 1.5558 -5.8613 25 6 3.9841 0.3187 -6.7005 26 6 4.5096 -0.0987 -7.9061 27 6 4.1152 -1.3079 -8.4489 28 6 3.1962 -2.0984 -7.7837 29 6 2.6698 -1.6803 -6.5751 30 6 3.0624 -0.4734 -6.0341 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.9994 -1.0728 0.4259 37 1 3.8532 0.4369 1.3573 38 1 3.6402 -0.8742 3.4508 39 1 3.7865 -2.3844 2.5200 40 1 6.0345 -1.6853 1.7404 41 1 5.8876 -0.1753 2.6713 42 1 5.4606 -2.3478 4.4251 43 1 7.3647 -3.6484 6.8354 44 1 2.2490 -1.6318 -1.1527 45 1 3.6381 -1.1236 -3.4054 46 1 1.9643 -1.5536 -3.8314 47 1 5.2642 1.7983 -5.8188 48 1 3.6423 2.3942 -6.2755 49 1 5.2280 0.5184 -8.4253 50 1 4.5256 -1.6353 -9.3926 51 1 2.8886 -3.0424 -8.2087 52 1 1.9522 -2.2979 -6.0553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176374751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:35 Heat of formation + Delta-G solvation = -81.207422 kcal Electronic energy + Delta-G solvation = -29199.130789 eV Core-core repulsion = 25162.188502 eV Total energy + Delta-G solvation = -4036.942287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.88918 -40.65453 -38.38102 -37.94219 -36.80209 -34.76283 -33.86239 -32.89207 -32.24874 -31.79635 -30.68433 -28.81725 -27.25030 -25.95104 -25.26893 -23.76947 -22.67119 -22.40211 -22.03215 -21.57719 -21.18569 -19.13736 -18.47072 -17.65764 -17.42977 -17.24135 -16.70452 -16.64014 -16.48075 -16.26330 -15.88690 -15.43991 -15.35304 -15.17237 -14.82250 -14.70791 -14.51204 -14.22980 -14.11106 -13.90570 -13.76625 -13.31325 -13.28699 -13.09666 -13.00447 -12.90121 -12.86281 -12.70175 -12.45567 -12.27414 -12.20000 -12.11747 -11.89503 -11.83397 -11.79015 -11.49585 -11.38835 -11.05246 -10.96066 -10.82193 -10.01175 -9.85041 -9.55793 -9.02633 -7.97743 -5.27057 0.25303 0.38270 1.45882 1.47124 1.57531 1.71089 2.24442 2.54329 2.72931 2.86235 3.19978 3.35453 3.55726 3.61214 3.77589 3.93947 4.04157 4.06051 4.07626 4.14385 4.21484 4.26411 4.36179 4.39349 4.41245 4.44041 4.50479 4.60468 4.62417 4.65041 4.76476 4.79739 4.83379 4.87750 4.88529 4.93911 4.99489 5.02447 5.08288 5.14369 5.26703 5.33166 5.39307 5.43326 5.45279 5.45404 5.52585 5.53750 5.64342 5.77951 5.99476 6.25406 6.62834 7.30930 7.34129 8.07270 8.31203 9.26025 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.001829 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.130062 B =15307.785893 C =17131.732104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.289 1.289 17 N -0.715 5.715 18 C 0.512 3.488 19 O -0.577 6.577 20 C -0.132 4.132 21 C 0.138 3.862 22 H 0.077 0.923 23 O -0.374 6.374 24 C 0.081 3.919 25 C -0.147 4.147 26 C -0.104 4.104 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.096 4.096 30 C -0.142 4.142 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.414 0.586 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.141 0.859 50 H 0.152 0.848 51 H 0.154 0.846 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 2.330 -31.959 35.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.149 4.149 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.216 1.216 17 N -0.367 5.367 18 C 0.299 3.701 19 O -0.457 6.457 20 C -0.172 4.172 21 C 0.080 3.920 22 H 0.094 0.906 23 O -0.293 6.293 24 C 0.005 3.995 25 C -0.147 4.147 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.137 4.137 29 C -0.113 4.113 30 C -0.142 4.142 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.206 0.794 43 H 0.061 0.939 44 H 0.250 0.750 45 H 0.128 0.872 46 H 0.159 0.841 47 H 0.122 0.878 48 H 0.099 0.901 49 H 0.159 0.841 50 H 0.169 0.831 51 H 0.171 0.829 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.165 3.315 -31.817 35.402 hybrid contribution 0.949 -0.332 0.691 1.220 sum -14.215 2.983 -31.126 34.348 Atomic orbital electron populations 1.22097 0.94305 1.02892 1.02064 1.20920 0.94477 0.96518 0.84229 0.92060 1.21833 0.94548 1.02053 0.96879 1.21418 0.95981 0.99949 0.96946 1.21596 0.93661 1.01007 0.98674 1.20857 0.94336 0.94186 0.88494 1.42629 1.04550 1.65341 1.26604 1.19691 0.85334 1.27695 1.05423 0.90943 1.25626 1.02356 1.01206 0.97785 1.69822 1.34623 1.41931 1.15578 0.85030 0.79754 0.77140 0.77573 1.19210 1.21831 1.21625 1.46053 1.66971 1.14710 1.08997 1.20914 0.76691 0.86950 0.85520 1.90706 1.51451 1.17761 1.85759 1.21870 1.05381 0.98996 0.90942 1.21007 0.91931 0.87915 0.91170 0.90566 1.89202 1.53760 1.59842 1.26469 1.21902 1.01421 0.94588 0.81554 1.21217 0.99099 0.97216 0.97174 1.20712 1.00111 0.97362 0.93981 1.21544 0.97320 0.93824 1.00845 1.21546 0.96747 1.00876 0.94512 1.20746 1.00255 0.94086 0.96258 1.21037 0.99141 0.96855 0.97175 0.93882 0.90896 0.90816 0.89729 0.89537 0.91604 0.93034 0.92448 0.91665 0.96434 0.97104 0.79370 0.93873 0.74962 0.87242 0.84112 0.87751 0.90106 0.84120 0.83066 0.82855 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.14 2.75 2.57 44.99 0.12 2.86 16 3 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -2.09 4.75 30.60 0.15 -1.95 16 5 C -0.10 -2.54 5.10 30.60 0.16 -2.38 16 6 C -0.11 -3.50 5.33 30.60 0.16 -3.34 16 7 C 0.15 6.16 6.26 86.38 0.54 6.70 16 8 N -0.75 -39.77 5.60 -343.46 -1.92 -41.69 16 9 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 10 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 12 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 13 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 17 N -0.71 -12.32 4.53 -442.53 -2.00 -14.33 16 18 C 0.51 11.16 7.71 87.66 0.68 11.83 16 19 O -0.58 -17.99 15.23 5.55 0.08 -17.90 16 20 C -0.13 -2.05 5.36 29.85 0.16 -1.89 16 21 C 0.14 2.72 2.84 29.97 0.09 2.80 16 22 H 0.08 1.66 7.92 -2.39 -0.02 1.64 16 23 O -0.37 -9.46 10.89 -140.39 -1.53 -10.99 16 24 C 0.08 1.51 7.63 71.35 0.54 2.05 16 25 C -0.15 -2.47 6.32 -19.72 -0.12 -2.59 16 26 C -0.10 -1.32 10.04 22.22 0.22 -1.09 16 27 C -0.12 -1.16 10.05 22.29 0.22 -0.94 16 28 C -0.12 -1.12 10.05 22.29 0.22 -0.90 16 29 C -0.10 -1.10 9.78 22.22 0.22 -0.88 16 30 C -0.14 -2.32 5.73 -19.72 -0.11 -2.43 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.53 7.75 -2.39 -0.02 1.51 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.37 20.82 7.67 -92.70 -0.71 20.11 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.41 4.83 8.60 -92.71 -0.80 4.04 16 45 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.14 1.11 7.82 -2.39 -0.02 1.09 16 47 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 50 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 51 H 0.15 0.62 8.06 -2.91 -0.02 0.59 16 52 H 0.15 0.94 7.86 -2.91 -0.02 0.91 16 Total: -1.00 -78.81 426.05 1.56 -77.25 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.60 Total: 30.43 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.23 Total: -11.81 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -3.65 Total: -116.04 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.44 Total: -28.89 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.81 1.56 -77.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176374751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.959 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds