Wall clock time and date at job start Sat Apr 11 2020 08:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47003 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99984 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00189 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99737 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99947 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47367 * 89.99264 * 13 11 9 15 15 H 1.48499 * 109.46741 * 209.99788 * 13 11 9 16 16 H 1.48501 * 109.46958 * 329.99156 * 13 11 9 17 17 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 2 1 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 2 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 2 21 21 H 1.08994 * 109.64140 * 54.58742 * 20 18 17 22 22 C 1.52978 * 109.63890 * 293.96355 * 20 18 17 23 23 C 1.50744 * 109.75392 * 191.06767 * 22 20 18 24 24 C 1.38589 * 118.76092 * 196.88124 * 23 22 20 25 25 C 1.38071 * 120.27858 * 180.25996 * 24 23 22 26 26 C 1.38263 * 119.85683 * 359.97438 * 25 24 23 27 27 C 1.38049 * 119.89707 * 359.91062 * 26 25 24 28 28 C 1.37909 * 121.34950 * 16.97945 * 23 22 20 29 29 C 1.50652 * 121.51163 * 359.62824 * 28 23 22 30 30 O 1.42720 * 110.27259 * 15.91002 * 29 28 23 31 31 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 34 34 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 35 35 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 36 36 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 37 37 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 38 38 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 39 39 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 40 40 H 1.09001 * 109.46897 * 299.99618 * 7 6 5 41 41 H 1.08998 * 109.47635 * 60.00234 * 7 6 5 42 42 H 0.96995 * 119.99345 * 359.97438 * 8 7 6 43 43 H 0.97003 * 119.99585 * 180.02562 * 12 11 9 44 44 H 0.97001 * 119.99790 * 264.99588 * 17 2 1 45 45 H 1.08998 * 109.42434 * 311.16343 * 22 20 18 46 46 H 1.09003 * 109.41860 * 70.98627 * 22 20 18 47 47 H 1.08007 * 119.86511 * 0.27991 * 24 23 22 48 48 H 1.07991 * 120.07247 * 180.02562 * 25 24 23 49 49 H 1.08003 * 120.04656 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.84515 * 180.02562 * 27 26 25 51 51 H 1.09007 * 109.33766 * 255.66895 * 29 28 23 52 52 H 1.09001 * 109.20615 * 136.07352 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 6 5.5996 -1.2264 2.6276 8 7 6.0880 -1.9181 3.8232 9 6 7.4300 -1.9546 4.0928 10 1 8.1284 -1.4732 3.4243 11 6 7.8928 -2.6094 5.2259 12 7 9.1827 -2.6440 5.4853 13 14 6.6848 -3.4414 6.3826 14 1 6.4800 -4.8490 5.9558 15 1 7.2264 -3.4170 7.7651 16 1 5.3875 -2.7195 6.3464 17 7 2.0184 -0.6906 -1.1961 18 6 2.1524 -0.0169 -2.3557 19 8 1.8639 1.1598 -2.4102 20 6 2.6607 -0.7259 -3.5845 21 1 2.0469 -1.6051 -3.7804 22 6 4.1158 -1.1467 -3.3705 23 6 4.7103 -1.6077 -4.6768 24 6 5.8782 -2.3534 -4.6516 25 6 6.4526 -2.7873 -5.8298 26 6 5.8599 -2.4769 -7.0397 27 6 4.6952 -1.7362 -7.0655 28 6 4.1170 -1.3003 -5.8832 29 6 2.8442 -0.4974 -5.9528 30 8 2.6054 0.1598 -4.7087 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7714 1.2057 36 1 3.9994 -1.0727 0.4261 37 1 3.8531 0.4371 1.3575 38 1 3.6402 -0.8758 3.4507 39 1 3.7865 -2.3852 2.5187 40 1 6.0345 -1.6854 1.7397 41 1 5.8876 -0.1761 2.6719 42 1 5.4607 -2.3500 4.4238 43 1 9.5061 -3.1020 6.2769 44 1 2.2491 -1.6318 -1.1525 45 1 4.6863 -0.2987 -2.9916 46 1 4.1548 -1.9610 -2.6470 47 1 6.3408 -2.5964 -3.7064 48 1 7.3625 -3.3685 -5.8063 49 1 6.3068 -2.8144 -7.9632 50 1 4.2327 -1.4946 -8.0111 51 1 2.0097 -1.1623 -6.1757 52 1 2.9331 0.2478 -6.7434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176402200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:01 Heat of formation + Delta-G solvation = -63.019957 kcal Electronic energy + Delta-G solvation = -29797.724703 eV Core-core repulsion = 25761.571084 eV Total energy + Delta-G solvation = -4036.153619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.02041 -39.78123 -37.90606 -36.89605 -35.43451 -33.82904 -33.19040 -32.09769 -31.71603 -30.76946 -29.69538 -27.79126 -26.01553 -25.29470 -24.19253 -22.67453 -22.08429 -21.30465 -20.94218 -20.77402 -20.35934 -17.88240 -17.64551 -17.46334 -16.56256 -16.38808 -16.16693 -15.43473 -15.14373 -15.04425 -14.82444 -14.58152 -14.42517 -14.15292 -14.02373 -13.69836 -13.57562 -13.40061 -13.28522 -13.07473 -12.94996 -12.70135 -12.45337 -12.29578 -12.02275 -11.94275 -11.68259 -11.54467 -11.46641 -11.40316 -11.18924 -10.89283 -10.86848 -10.43730 -10.35962 -10.23003 -10.11107 -9.86158 -9.59056 -9.32474 -9.15080 -8.99180 -8.89132 -7.22474 -5.76680 -3.11935 0.91886 0.98261 2.32608 2.50218 3.32638 3.36653 3.39223 3.44456 3.60488 4.10711 4.22192 4.28040 4.43873 4.53008 4.56587 4.59007 4.64907 4.75416 4.82442 4.88240 4.89525 4.94814 5.07712 5.16762 5.21635 5.28823 5.29282 5.32673 5.39762 5.47110 5.53677 5.55467 5.61227 5.64070 5.66612 5.79226 5.84878 6.00800 6.01816 6.05228 6.11154 6.13502 6.16148 6.16895 6.28259 6.34282 6.56145 6.60595 6.76317 6.80285 7.21163 7.95464 8.00269 8.42694 9.22105 9.94571 10.14820 11.41897 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.002301 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.017636 B =12167.040510 C =14806.214759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.720 5.720 18 C 0.522 3.478 19 O -0.516 6.516 20 C 0.074 3.926 21 H 0.088 0.912 22 C -0.105 4.105 23 C -0.071 4.071 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.123 4.123 29 C 0.101 3.899 30 O -0.345 6.345 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.401 0.599 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.124 0.876 51 H 0.067 0.933 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.637 0.110 -25.784 31.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.373 5.373 18 C 0.307 3.693 19 O -0.390 6.390 20 C 0.012 3.988 21 H 0.106 0.894 22 C -0.142 4.142 23 C -0.071 4.071 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.130 4.130 28 C -0.123 4.123 29 C 0.024 3.976 30 O -0.262 6.262 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.235 0.765 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.085 0.915 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.645 1.242 -25.825 31.302 hybrid contribution -0.381 -1.489 0.839 1.751 sum -18.025 -0.247 -24.986 30.810 Atomic orbital electron populations 1.22181 0.95279 1.02111 1.02623 1.21062 0.93812 0.97810 0.83493 0.89148 1.21945 0.96835 1.00948 0.96771 1.21520 0.93980 1.01304 0.98477 1.21780 0.97294 1.00257 0.97430 1.20628 0.90756 0.95697 0.89988 1.42741 1.05247 1.66232 1.26161 1.19083 0.82265 1.29206 1.06815 0.89285 1.24696 0.95640 1.00791 0.98253 1.69710 1.11718 1.48260 1.28647 0.86515 0.80942 0.79774 0.81114 1.21102 1.21712 1.20358 1.46009 1.67740 1.14091 1.09504 1.20016 0.78005 0.87353 0.83946 1.90739 1.48399 1.15510 1.84383 1.21923 0.96552 0.93138 0.87169 0.89432 1.21058 0.94682 1.02789 0.95683 1.19386 0.95892 0.98092 0.93740 1.21157 0.95144 0.97765 0.98980 1.21185 0.99959 0.99724 0.92440 1.21121 0.95899 0.98723 0.98150 1.20956 0.96208 0.98600 0.97245 1.20244 0.98378 1.00296 0.93391 1.21526 0.93003 0.96233 0.86820 1.88214 1.91805 1.32914 1.13296 0.92189 0.92459 0.91424 0.90124 0.91313 0.91955 0.91715 0.92092 0.92173 0.95781 0.95738 0.80741 0.93078 0.76490 0.88680 0.88726 0.85389 0.85668 0.85842 0.85824 0.91467 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.49 37.16 0.35 -0.97 16 2 C 0.14 1.26 2.58 -67.93 -0.17 1.08 16 3 H 0.09 0.99 7.57 -51.93 -0.39 0.60 16 4 C -0.13 -1.07 4.75 -26.73 -0.13 -1.20 16 5 C -0.11 -1.25 5.10 -26.73 -0.14 -1.38 16 6 C -0.13 -1.83 5.33 -26.73 -0.14 -1.98 16 7 C 0.16 3.00 6.26 -4.04 -0.03 2.97 16 8 N -0.76 -18.30 5.41 -59.91 -0.32 -18.63 16 9 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 12 N -0.94 -29.67 13.97 55.49 0.78 -28.90 16 13 Si 0.89 22.21 27.74 -169.99 -4.71 17.49 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 17 N -0.72 -5.92 4.51 -53.81 -0.24 -6.16 16 18 C 0.52 5.67 7.12 -10.99 -0.08 5.59 16 19 O -0.52 -7.89 16.18 -14.18 -0.23 -8.12 16 20 C 0.07 0.66 3.04 -27.90 -0.08 0.58 16 21 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 22 C -0.10 -0.87 5.29 -27.87 -0.15 -1.02 16 23 C -0.07 -0.64 5.78 -104.59 -0.60 -1.24 16 24 C -0.11 -0.96 9.67 -39.51 -0.38 -1.35 16 25 C -0.12 -0.90 10.05 -39.63 -0.40 -1.30 16 26 C -0.12 -0.87 10.05 -39.64 -0.40 -1.27 16 27 C -0.11 -0.81 9.67 -39.50 -0.38 -1.19 16 28 C -0.12 -1.04 5.80 -104.62 -0.61 -1.64 16 29 C 0.10 0.78 6.66 35.98 0.24 1.02 16 30 O -0.34 -3.81 10.00 -54.96 -0.55 -4.36 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 37 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.36 8.41 5.53 -40.82 -0.23 8.18 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 45 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 50 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 51 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 52 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 421.21 15.07 6.35 6.35 Total: -1.00 -36.36 421.21 -11.28 -47.64 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.99 Total: 5.22 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.35 Total: -10.52 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.21 Total: -53.69 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.78 Total: -12.49 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -36.36 -11.28 -47.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176402200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.381 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds