Wall clock time and date at job start Sat Apr 11 2020 08:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 C 1.53001 * 109.47204 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47003 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99984 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00189 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99737 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99947 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47367 * 89.99264 * 13 11 9 15 15 H 1.48499 * 109.46741 * 209.99788 * 13 11 9 16 16 H 1.48501 * 109.46958 * 329.99156 * 13 11 9 17 17 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 2 1 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 2 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 2 21 21 H 1.08994 * 109.64140 * 54.58742 * 20 18 17 22 22 C 1.52978 * 109.63890 * 293.96355 * 20 18 17 23 23 C 1.50744 * 109.75392 * 191.06767 * 22 20 18 24 24 C 1.38589 * 118.76092 * 196.88124 * 23 22 20 25 25 C 1.38071 * 120.27858 * 180.25996 * 24 23 22 26 26 C 1.38263 * 119.85683 * 359.97438 * 25 24 23 27 27 C 1.38049 * 119.89707 * 359.91062 * 26 25 24 28 28 C 1.37909 * 121.34950 * 16.97945 * 23 22 20 29 29 C 1.50652 * 121.51163 * 359.62824 * 28 23 22 30 30 O 1.42720 * 110.27259 * 15.91002 * 29 28 23 31 31 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 34 34 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 35 35 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 36 36 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 37 37 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 38 38 H 1.09001 * 109.46982 * 299.99895 * 6 5 4 39 39 H 1.08994 * 109.47052 * 60.00362 * 6 5 4 40 40 H 1.09001 * 109.46897 * 299.99618 * 7 6 5 41 41 H 1.08998 * 109.47635 * 60.00234 * 7 6 5 42 42 H 0.96995 * 119.99345 * 359.97438 * 8 7 6 43 43 H 0.97003 * 119.99585 * 180.02562 * 12 11 9 44 44 H 0.97001 * 119.99790 * 264.99588 * 17 2 1 45 45 H 1.08998 * 109.42434 * 311.16343 * 22 20 18 46 46 H 1.09003 * 109.41860 * 70.98627 * 22 20 18 47 47 H 1.08007 * 119.86511 * 0.27991 * 24 23 22 48 48 H 1.07991 * 120.07247 * 180.02562 * 25 24 23 49 49 H 1.08003 * 120.04656 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.84515 * 180.02562 * 27 26 25 51 51 H 1.09007 * 109.33766 * 255.66895 * 29 28 23 52 52 H 1.09001 * 109.20615 * 136.07352 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5628 7 6 5.5996 -1.2264 2.6276 8 7 6.0880 -1.9181 3.8232 9 6 7.4300 -1.9546 4.0928 10 1 8.1284 -1.4732 3.4243 11 6 7.8928 -2.6094 5.2259 12 7 9.1827 -2.6440 5.4853 13 14 6.6848 -3.4414 6.3826 14 1 6.4800 -4.8490 5.9558 15 1 7.2264 -3.4170 7.7651 16 1 5.3875 -2.7195 6.3464 17 7 2.0184 -0.6906 -1.1961 18 6 2.1524 -0.0169 -2.3557 19 8 1.8639 1.1598 -2.4102 20 6 2.6607 -0.7259 -3.5845 21 1 2.0469 -1.6051 -3.7804 22 6 4.1158 -1.1467 -3.3705 23 6 4.7103 -1.6077 -4.6768 24 6 5.8782 -2.3534 -4.6516 25 6 6.4526 -2.7873 -5.8298 26 6 5.8599 -2.4769 -7.0397 27 6 4.6952 -1.7362 -7.0655 28 6 4.1170 -1.3003 -5.8832 29 6 2.8442 -0.4974 -5.9528 30 8 2.6054 0.1598 -4.7087 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 1.7517 -1.7714 1.2057 36 1 3.9994 -1.0727 0.4261 37 1 3.8531 0.4371 1.3575 38 1 3.6402 -0.8758 3.4507 39 1 3.7865 -2.3852 2.5187 40 1 6.0345 -1.6854 1.7397 41 1 5.8876 -0.1761 2.6719 42 1 5.4607 -2.3500 4.4238 43 1 9.5061 -3.1020 6.2769 44 1 2.2491 -1.6318 -1.1525 45 1 4.6863 -0.2987 -2.9916 46 1 4.1548 -1.9610 -2.6470 47 1 6.3408 -2.5964 -3.7064 48 1 7.3625 -3.3685 -5.8063 49 1 6.3068 -2.8144 -7.9632 50 1 4.2327 -1.4946 -8.0111 51 1 2.0097 -1.1623 -6.1757 52 1 2.9331 0.2478 -6.7434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176402200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:58 Heat of formation + Delta-G solvation = -85.634382 kcal Electronic energy + Delta-G solvation = -29798.705338 eV Core-core repulsion = 25761.571084 eV Total energy + Delta-G solvation = -4037.134254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.71201 -40.51224 -38.59057 -37.91234 -36.90131 -34.87352 -34.29888 -33.17495 -32.68795 -32.01781 -30.37625 -29.04043 -26.62385 -26.05090 -25.61622 -23.57701 -23.20485 -22.33725 -22.05160 -21.58424 -21.01547 -19.62389 -18.59822 -18.27989 -17.26923 -17.07102 -16.81767 -16.62575 -16.30884 -16.01983 -15.83652 -15.62773 -15.51467 -15.08596 -14.87868 -14.68697 -14.67217 -14.31565 -14.22440 -14.12046 -13.93206 -13.71012 -13.46161 -13.08938 -12.95883 -12.92069 -12.88500 -12.61934 -12.44870 -12.31042 -12.14716 -12.03742 -11.97156 -11.88332 -11.77770 -11.48946 -11.43250 -10.97229 -10.95109 -10.66229 -10.11477 -9.72635 -9.57756 -9.31282 -8.04231 -5.38442 0.33414 0.40622 1.37512 1.42298 1.49939 1.50069 1.80490 2.48199 2.74759 2.95589 3.26806 3.43525 3.51782 3.64166 3.66011 3.88449 3.92665 3.98806 4.02863 4.06733 4.09894 4.22467 4.35027 4.36395 4.40224 4.42816 4.50928 4.58681 4.65224 4.67929 4.73441 4.74866 4.77688 4.88693 4.92497 4.99030 5.03343 5.05252 5.09482 5.12262 5.26576 5.33313 5.42773 5.46008 5.51692 5.55872 5.57809 5.58818 5.73735 5.94281 6.04720 6.20184 6.52184 7.06936 7.19684 7.83197 8.03550 9.17478 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.002301 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.017636 B =12167.040510 C =14806.214759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.115 4.115 5 C -0.109 4.109 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.241 4.241 10 H 0.051 0.949 11 C -0.068 4.068 12 N -0.986 5.986 13 Si 0.962 3.038 14 H -0.274 1.274 15 H -0.296 1.296 16 H -0.249 1.249 17 N -0.705 5.705 18 C 0.521 3.479 19 O -0.569 6.569 20 C 0.077 3.923 21 H 0.115 0.885 22 C -0.099 4.099 23 C -0.089 4.089 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.115 4.115 28 C -0.134 4.134 29 C 0.098 3.902 30 O -0.377 6.377 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.022 0.978 41 H 0.013 0.987 42 H 0.368 0.632 43 H 0.259 0.741 44 H 0.416 0.584 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.138 0.862 49 H 0.145 0.855 50 H 0.147 0.853 51 H 0.087 0.913 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 -1.789 -26.210 33.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.154 4.154 7 C 0.024 3.976 8 N -0.407 5.407 9 C -0.372 4.372 10 H 0.069 0.931 11 C -0.260 4.260 12 N -0.636 5.636 13 Si 0.789 3.211 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.174 1.174 17 N -0.359 5.359 18 C 0.307 3.693 19 O -0.447 6.447 20 C 0.016 3.984 21 H 0.132 0.868 22 C -0.137 4.137 23 C -0.089 4.089 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.133 4.133 28 C -0.135 4.135 29 C 0.022 3.978 30 O -0.296 6.296 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.253 0.747 45 H 0.092 0.908 46 H 0.133 0.867 47 H 0.149 0.851 48 H 0.156 0.844 49 H 0.163 0.837 50 H 0.165 0.835 51 H 0.105 0.895 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.323 -0.680 -26.275 33.224 hybrid contribution 0.540 -0.841 0.860 1.318 sum -19.783 -1.521 -25.414 32.242 Atomic orbital electron populations 1.22120 0.94261 1.03049 1.02156 1.21011 0.94538 0.96724 0.83838 0.91700 1.21847 0.94568 1.02250 0.96615 1.21456 0.95915 1.00175 0.97198 1.21663 0.93048 1.01622 0.99037 1.20856 0.94529 0.94284 0.87980 1.42758 1.03457 1.66685 1.27769 1.19059 0.84048 1.28058 1.06022 0.93086 1.25629 0.97741 1.02139 1.00461 1.69908 1.14318 1.49835 1.29531 0.85303 0.79206 0.78940 0.77697 1.19971 1.22227 1.17353 1.45922 1.66556 1.14682 1.08692 1.20422 0.77174 0.86788 0.84965 1.90712 1.50943 1.17778 1.85259 1.21993 0.97165 0.93280 0.85960 0.86757 1.21013 0.93927 1.02573 0.96153 1.19528 0.96439 0.98800 0.94169 1.21310 0.95399 0.98279 0.99604 1.21453 1.00536 0.99868 0.92548 1.21448 0.95828 0.98270 0.98799 1.21265 0.96174 0.98040 0.97837 1.20439 0.98816 1.00515 0.93701 1.21723 0.93460 0.96758 0.85852 1.88169 1.92049 1.34654 1.14700 0.94169 0.90731 0.90446 0.89292 0.89141 0.91351 0.92940 0.91786 0.90773 0.95947 0.96898 0.79914 0.93258 0.74698 0.90848 0.86685 0.85139 0.84381 0.83694 0.83516 0.89497 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.49 71.98 0.68 -1.57 16 2 C 0.14 2.32 2.58 44.99 0.12 2.43 16 3 H 0.06 1.42 7.57 -2.39 -0.02 1.40 16 4 C -0.12 -1.59 4.75 30.60 0.15 -1.44 16 5 C -0.11 -2.14 5.10 30.60 0.16 -1.99 16 6 C -0.12 -2.97 5.33 30.59 0.16 -2.80 16 7 C 0.15 5.60 6.26 86.38 0.54 6.14 16 8 N -0.76 -35.87 5.41 -343.44 -1.86 -37.73 16 9 C -0.24 -14.08 10.47 84.04 0.88 -13.20 16 10 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 11 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 12 N -0.99 -63.94 13.97 21.65 0.30 -63.64 16 13 Si 0.96 45.20 27.74 68.60 1.90 47.10 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.25 -10.43 6.52 99.48 0.65 -9.78 16 17 N -0.70 -10.56 4.51 -442.54 -1.99 -12.55 16 18 C 0.52 11.20 7.12 87.66 0.62 11.82 16 19 O -0.57 -18.03 16.18 15.83 0.26 -17.77 16 20 C 0.08 1.33 3.04 29.84 0.09 1.42 16 21 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 22 C -0.10 -1.62 5.29 29.85 0.16 -1.46 16 23 C -0.09 -1.56 5.78 -19.84 -0.11 -1.67 16 24 C -0.13 -2.14 9.67 22.31 0.22 -1.93 16 25 C -0.13 -1.85 10.05 22.24 0.22 -1.62 16 26 C -0.13 -1.60 10.05 22.23 0.22 -1.37 16 27 C -0.12 -1.48 9.67 22.32 0.22 -1.26 16 28 C -0.13 -2.13 5.80 -19.86 -0.12 -2.25 16 29 C 0.10 1.42 6.66 71.22 0.47 1.89 16 30 O -0.38 -8.32 10.00 -130.11 -1.30 -9.62 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.26 7.75 -2.39 -0.02 1.24 16 37 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.37 16.14 5.53 -92.71 -0.51 15.63 16 43 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.42 3.70 8.60 -92.71 -0.80 2.91 16 45 H 0.07 1.49 8.10 -2.39 -0.02 1.48 16 46 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 48 H 0.14 1.54 8.06 -2.92 -0.02 1.51 16 49 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 50 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 51 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -81.68 421.21 1.99 -79.68 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.46 Total: 27.00 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 5.15 Total: -12.47 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.55 Total: -113.92 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.04 Total: -27.39 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -81.68 1.99 -79.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176402200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.950 kcal (2) G-P(sol) polarization free energy of solvation -81.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds