Wall clock time and date at job start Sat Apr 11 2020 08:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47296 * 2 1 4 4 C 1.53000 * 109.47268 * 240.00097 * 2 1 3 5 5 C 1.53000 * 109.46910 * 65.00077 * 4 2 1 6 6 O 1.42909 * 109.47065 * 180.02562 * 5 4 2 7 7 C 1.35893 * 116.99738 * 179.97438 * 6 5 4 8 8 C 1.38730 * 120.06318 * 359.72471 * 7 6 5 9 9 C 1.38145 * 119.94695 * 179.74170 * 8 7 6 10 10 C 1.38263 * 120.05508 * 0.51207 * 9 8 7 11 11 C 1.38266 * 120.11288 * 359.76629 * 10 9 8 12 12 C 1.38146 * 120.05429 * 359.97438 * 11 10 9 13 13 C 1.50703 * 109.47215 * 120.00055 * 2 1 3 14 14 O 1.21281 * 119.99716 * 113.68256 * 13 2 1 15 15 N 1.34777 * 119.99737 * 293.68202 * 13 2 1 16 16 C 1.48211 * 119.97041 * 6.35900 * 15 13 2 17 17 C 1.47138 * 110.34114 * 102.46961 * 16 15 13 18 18 C 1.53794 * 111.84318 * 58.29635 * 17 16 15 19 19 N 1.43471 * 107.95867 * 281.66410 * 18 17 16 20 20 C 1.36933 * 118.93776 * 273.61081 * 19 18 17 21 21 H 1.07994 * 120.00246 * 24.24890 * 20 19 18 22 22 C 1.38817 * 119.99852 * 204.24681 * 20 19 18 23 23 N 1.31614 * 119.99875 * 205.07311 * 22 20 19 24 24 Si 1.86803 * 119.99871 * 25.06906 * 22 20 19 25 25 H 1.48496 * 109.47230 * 265.27771 * 24 22 20 26 26 H 1.48487 * 109.47146 * 145.27554 * 24 22 20 27 27 H 1.48503 * 109.46771 * 25.27547 * 24 22 20 28 28 C 1.48856 * 122.11904 * 93.88777 * 19 18 17 29 29 C 1.43618 * 119.96523 * 186.33312 * 15 13 2 30 30 H 1.09001 * 109.47182 * 186.52320 * 1 2 3 31 31 H 1.08998 * 109.47248 * 306.52561 * 1 2 3 32 32 H 1.09002 * 109.47092 * 66.52241 * 1 2 3 33 33 H 1.08996 * 109.47396 * 184.99802 * 4 2 1 34 34 H 1.08998 * 109.47285 * 305.00252 * 4 2 1 35 35 H 1.08997 * 109.47318 * 299.99422 * 5 4 2 36 36 H 1.09002 * 109.47480 * 60.00155 * 5 4 2 37 37 H 1.08005 * 120.02300 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.97143 * 180.27548 * 9 8 7 39 39 H 1.08003 * 119.94458 * 179.74177 * 10 9 8 40 40 H 1.08004 * 119.97473 * 179.97438 * 11 10 9 41 41 H 1.07998 * 120.02698 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.32767 * 342.19813 * 16 15 13 43 43 H 1.09001 * 109.17842 * 222.64252 * 16 15 13 44 44 H 1.08997 * 109.00687 * 297.68516 * 17 16 15 45 45 H 1.09003 * 108.94295 * 178.86462 * 17 16 15 46 46 H 1.08998 * 109.76397 * 162.05149 * 18 17 16 47 47 H 1.08997 * 109.80991 * 41.30495 * 18 17 16 48 48 H 0.96997 * 120.00244 * 5.10798 * 23 22 20 49 49 H 1.09001 * 109.47739 * 80.34810 * 28 19 18 50 50 H 1.08994 * 109.48365 * 200.38222 * 28 19 18 51 51 H 1.09004 * 108.87531 * 31.47256 * 29 15 13 52 52 H 1.09007 * 108.87460 * 150.00808 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 8 2.1111 -0.6049 -3.6622 7 6 1.8338 -0.0309 -4.8623 8 6 1.1135 1.1535 -4.9163 9 6 0.8375 1.7378 -6.1373 10 6 1.2694 1.1375 -7.3056 11 6 1.9825 -0.0459 -7.2549 12 6 2.2657 -0.6314 -6.0361 13 6 2.0323 -0.7104 1.2305 14 8 2.6322 -1.7590 1.1228 15 7 1.8150 -0.1805 2.4505 16 6 0.9628 1.0237 2.5935 17 6 -0.3726 0.6497 3.0853 18 6 -0.3008 -0.0810 4.4367 19 7 0.0877 -1.4390 4.1852 20 6 -0.8803 -2.3610 3.8889 21 1 -1.8211 -2.0397 3.4671 22 6 -0.6523 -3.7088 4.1307 23 7 -1.3023 -4.6206 3.4391 24 14 0.5771 -4.2283 5.4377 25 1 1.8974 -4.4763 4.8048 26 1 0.1030 -5.4715 6.0970 27 1 0.7083 -3.1500 6.4503 28 6 1.5086 -1.8791 4.2420 29 6 2.4089 -0.7836 3.6107 30 1 -0.3633 -1.0210 0.1167 31 1 -0.3633 0.6116 0.8258 32 1 -0.3633 0.4094 -0.9426 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2952 35 1 0.5490 0.1472 -2.5390 36 1 2.0699 1.0676 -2.4494 37 1 0.7720 1.6204 -4.0042 38 1 0.2806 2.6622 -6.1795 39 1 1.0490 1.5937 -8.2594 40 1 2.3184 -0.5131 -8.1689 41 1 2.8223 -1.5560 -5.9970 42 1 0.8662 1.5144 1.6250 43 1 1.4285 1.7100 3.3007 44 1 -0.8504 -0.0023 2.3542 45 1 -0.9726 1.5524 3.2012 46 1 -1.2780 -0.0605 4.9191 47 1 0.4371 0.4007 5.0783 48 1 -1.8845 -4.3533 2.7108 49 1 1.7985 -2.0385 5.2806 50 1 1.6236 -2.8092 3.6855 51 1 3.3619 -1.2302 3.3272 52 1 2.5907 -0.0096 4.3565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198412689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:52 Heat of formation + Delta-G solvation = -14.223543 kcal Electronic energy + Delta-G solvation = -31373.861472 eV Core-core repulsion = 27339.823824 eV Total energy + Delta-G solvation = -4034.037648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.45633 -40.08106 -37.79509 -37.21791 -35.18564 -34.44726 -32.46819 -31.55763 -31.25971 -30.34710 -28.82229 -27.75988 -25.87457 -25.25765 -23.60803 -22.81430 -22.62405 -22.05648 -20.84745 -19.86142 -18.73654 -18.08395 -17.38901 -17.04520 -16.46981 -16.19538 -16.03613 -15.83501 -15.22469 -14.74963 -14.66509 -14.49764 -14.08718 -13.84157 -13.70276 -13.50801 -13.45985 -13.13923 -13.02692 -12.77487 -12.65987 -12.30531 -12.18354 -11.95575 -11.85651 -11.62854 -11.48087 -11.38786 -11.11441 -11.03441 -10.91159 -10.83959 -10.66572 -10.56249 -10.26491 -9.92211 -9.71745 -9.31273 -9.26856 -9.14814 -8.45639 -8.42444 -8.17433 -6.93704 -6.27873 -3.23492 1.07580 1.20634 2.89607 2.99377 3.46800 3.50175 3.54360 3.57572 3.71932 4.46127 4.58182 4.62827 4.66964 4.73031 4.84860 4.86689 4.95528 4.98038 5.05410 5.11767 5.12641 5.17464 5.26457 5.29664 5.42150 5.43056 5.46165 5.57242 5.66169 5.74086 5.77385 5.80206 5.84893 5.94103 5.99433 6.06137 6.09037 6.14715 6.17912 6.20579 6.26566 6.26819 6.36075 6.45946 6.53900 6.63150 6.75390 6.84268 7.09793 7.24275 7.76777 8.07273 8.50209 8.60041 9.07304 9.72495 10.18862 11.16807 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002412 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.501153 B =11604.129266 C =12070.227124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.100 4.100 5 C 0.061 3.939 6 O -0.312 6.312 7 C 0.135 3.865 8 C -0.211 4.211 9 C -0.081 4.081 10 C -0.164 4.164 11 C -0.081 4.081 12 C -0.155 4.155 13 C 0.521 3.479 14 O -0.536 6.536 15 N -0.586 5.586 16 C 0.119 3.881 17 C -0.181 4.181 18 C 0.163 3.837 19 N -0.597 5.597 20 C -0.350 4.350 21 H 0.065 0.935 22 C -0.007 4.007 23 N -0.914 5.914 24 Si 1.050 2.950 25 H -0.294 1.294 26 H -0.301 1.301 27 H -0.287 1.287 28 C 0.107 3.893 29 C 0.104 3.896 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.034 0.966 48 H 0.263 0.737 49 H 0.035 0.965 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 17.797 -14.495 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.122 4.122 3 H 0.110 0.890 4 C -0.137 4.137 5 C -0.014 4.014 6 O -0.225 6.225 7 C 0.089 3.911 8 C -0.230 4.230 9 C -0.099 4.099 10 C -0.183 4.183 11 C -0.100 4.100 12 C -0.174 4.174 13 C 0.309 3.691 14 O -0.413 6.413 15 N -0.318 5.318 16 C -0.003 4.003 17 C -0.221 4.221 18 C 0.035 3.965 19 N -0.320 5.320 20 C -0.479 4.479 21 H 0.083 0.917 22 C -0.209 4.209 23 N -0.552 5.552 24 Si 0.882 3.118 25 H -0.222 1.222 26 H -0.229 1.229 27 H -0.214 1.214 28 C -0.019 4.019 29 C -0.022 4.022 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.123 15.751 -13.691 22.051 hybrid contribution -0.917 1.583 -0.654 1.943 sum 6.207 17.334 -14.345 23.340 Atomic orbital electron populations 1.22259 0.92551 1.04456 1.02730 1.21096 0.98052 1.00064 0.92991 0.89050 1.21280 1.02861 1.00083 0.89518 1.22947 0.99166 0.95905 0.83417 1.86096 1.74089 1.49986 1.12329 1.19094 0.94296 0.91908 0.85811 1.21309 1.04801 0.97495 0.99396 1.20955 0.97923 0.99117 0.91897 1.21053 1.01780 0.97134 0.98299 1.20975 0.96905 0.95158 0.96918 1.20507 1.04782 1.02078 0.90009 1.20277 0.79445 0.85014 0.84377 1.90700 1.42199 1.21945 1.86418 1.47285 1.49485 1.29023 1.05987 1.20879 0.91856 0.86308 1.01290 1.22064 0.96189 1.00760 1.03129 1.20266 0.98260 0.85654 0.92340 1.43924 1.01234 1.05251 1.81547 1.20116 0.97979 0.88610 1.41151 0.91712 1.26071 1.01614 0.91611 1.01637 1.70851 1.29830 1.34822 1.19745 0.84052 0.75651 0.74821 0.77321 1.22191 1.22926 1.21388 1.22561 0.84408 0.97374 0.97534 1.21652 0.96747 0.96731 0.87038 0.91125 0.90157 0.92070 0.90143 0.89661 0.91518 0.92083 0.85434 0.85883 0.86042 0.85447 0.85149 0.90532 0.91700 0.90332 0.92349 0.93126 0.94775 0.92693 0.94783 0.90591 0.90768 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.14 37.16 0.30 -1.79 16 2 C -0.10 -1.32 1.90 -91.77 -0.17 -1.49 16 3 H 0.09 0.93 7.43 -51.93 -0.39 0.54 16 4 C -0.10 -1.34 4.36 -26.73 -0.12 -1.45 16 5 C 0.06 0.66 4.51 37.16 0.17 0.83 16 6 O -0.31 -4.05 10.14 -19.41 -0.20 -4.25 16 7 C 0.13 1.57 6.69 -39.21 -0.26 1.31 16 8 C -0.21 -2.11 9.04 -39.43 -0.36 -2.46 16 9 C -0.08 -0.70 10.04 -39.61 -0.40 -1.09 16 10 C -0.16 -1.35 10.04 -39.56 -0.40 -1.75 16 11 C -0.08 -0.71 10.04 -39.60 -0.40 -1.10 16 12 C -0.16 -1.64 9.99 -39.43 -0.39 -2.03 16 13 C 0.52 9.28 6.99 -10.98 -0.08 9.20 16 14 O -0.54 -11.86 15.61 5.56 0.09 -11.77 16 15 N -0.59 -9.75 2.46 -176.43 -0.43 -10.19 16 16 C 0.12 1.54 5.02 -5.92 -0.03 1.51 16 17 C -0.18 -2.73 4.96 -29.13 -0.14 -2.88 16 18 C 0.16 3.03 5.63 -5.23 -0.03 3.00 16 19 N -0.60 -13.84 2.33 -171.78 -0.40 -14.24 16 20 C -0.35 -9.71 9.53 -15.06 -0.14 -9.85 16 21 H 0.07 1.91 8.06 -52.49 -0.42 1.49 16 22 C -0.01 -0.22 5.09 -17.43 -0.09 -0.31 16 23 N -0.91 -28.93 13.70 55.49 0.76 -28.17 16 24 Si 1.05 27.00 24.48 -169.99 -4.16 22.83 16 25 H -0.29 -7.38 6.77 56.52 0.38 -7.00 16 26 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.29 -6.92 6.55 56.52 0.37 -6.55 16 28 C 0.11 2.37 4.56 -1.56 -0.01 2.37 16 29 C 0.10 1.84 5.21 -4.39 -0.02 1.82 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.99 3.47 -51.93 -0.18 0.81 16 32 H 0.06 0.62 6.28 -51.93 -0.33 0.29 16 33 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 36 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 37 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.08 0.80 4.82 -51.93 -0.25 0.55 16 43 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 44 H 0.08 1.41 5.99 -51.93 -0.31 1.10 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 47 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 48 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 49 H 0.03 0.74 5.93 -51.93 -0.31 0.43 16 50 H 0.08 1.97 5.60 -51.93 -0.29 1.68 16 51 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 52 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -34.83 390.64 -9.14 -43.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.11 Total: 2.10 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.57 Total: -6.18 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.07 Total: -52.60 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.11 Total: -16.01 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.16 Total: 22.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.83 -9.14 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198412689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.739 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds