Wall clock time and date at job start Sat Apr 11 2020 08:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47296 * 2 1 4 4 C 1.53000 * 109.47268 * 240.00097 * 2 1 3 5 5 C 1.53000 * 109.46910 * 65.00077 * 4 2 1 6 6 O 1.42909 * 109.47065 * 180.02562 * 5 4 2 7 7 C 1.35893 * 116.99738 * 179.97438 * 6 5 4 8 8 C 1.38730 * 120.06318 * 359.72471 * 7 6 5 9 9 C 1.38145 * 119.94695 * 179.74170 * 8 7 6 10 10 C 1.38263 * 120.05508 * 0.51207 * 9 8 7 11 11 C 1.38266 * 120.11288 * 359.76629 * 10 9 8 12 12 C 1.38146 * 120.05429 * 359.97438 * 11 10 9 13 13 C 1.50703 * 109.47215 * 120.00055 * 2 1 3 14 14 O 1.21281 * 119.99716 * 113.68256 * 13 2 1 15 15 N 1.34777 * 119.99737 * 293.68202 * 13 2 1 16 16 C 1.48211 * 119.97041 * 6.35900 * 15 13 2 17 17 C 1.47138 * 110.34114 * 102.46961 * 16 15 13 18 18 C 1.53794 * 111.84318 * 58.29635 * 17 16 15 19 19 N 1.43471 * 107.95867 * 281.66410 * 18 17 16 20 20 C 1.36933 * 118.93776 * 273.61081 * 19 18 17 21 21 H 1.07994 * 120.00246 * 24.24890 * 20 19 18 22 22 C 1.38817 * 119.99852 * 204.24681 * 20 19 18 23 23 N 1.31614 * 119.99875 * 205.07311 * 22 20 19 24 24 Si 1.86803 * 119.99871 * 25.06906 * 22 20 19 25 25 H 1.48496 * 109.47230 * 265.27771 * 24 22 20 26 26 H 1.48487 * 109.47146 * 145.27554 * 24 22 20 27 27 H 1.48503 * 109.46771 * 25.27547 * 24 22 20 28 28 C 1.48856 * 122.11904 * 93.88777 * 19 18 17 29 29 C 1.43618 * 119.96523 * 186.33312 * 15 13 2 30 30 H 1.09001 * 109.47182 * 186.52320 * 1 2 3 31 31 H 1.08998 * 109.47248 * 306.52561 * 1 2 3 32 32 H 1.09002 * 109.47092 * 66.52241 * 1 2 3 33 33 H 1.08996 * 109.47396 * 184.99802 * 4 2 1 34 34 H 1.08998 * 109.47285 * 305.00252 * 4 2 1 35 35 H 1.08997 * 109.47318 * 299.99422 * 5 4 2 36 36 H 1.09002 * 109.47480 * 60.00155 * 5 4 2 37 37 H 1.08005 * 120.02300 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.97143 * 180.27548 * 9 8 7 39 39 H 1.08003 * 119.94458 * 179.74177 * 10 9 8 40 40 H 1.08004 * 119.97473 * 179.97438 * 11 10 9 41 41 H 1.07998 * 120.02698 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.32767 * 342.19813 * 16 15 13 43 43 H 1.09001 * 109.17842 * 222.64252 * 16 15 13 44 44 H 1.08997 * 109.00687 * 297.68516 * 17 16 15 45 45 H 1.09003 * 108.94295 * 178.86462 * 17 16 15 46 46 H 1.08998 * 109.76397 * 162.05149 * 18 17 16 47 47 H 1.08997 * 109.80991 * 41.30495 * 18 17 16 48 48 H 0.96997 * 120.00244 * 5.10798 * 23 22 20 49 49 H 1.09001 * 109.47739 * 80.34810 * 28 19 18 50 50 H 1.08994 * 109.48365 * 200.38222 * 28 19 18 51 51 H 1.09004 * 108.87531 * 31.47256 * 29 15 13 52 52 H 1.09007 * 108.87460 * 150.00808 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 8 2.1111 -0.6049 -3.6622 7 6 1.8338 -0.0309 -4.8623 8 6 1.1135 1.1535 -4.9163 9 6 0.8375 1.7378 -6.1373 10 6 1.2694 1.1375 -7.3056 11 6 1.9825 -0.0459 -7.2549 12 6 2.2657 -0.6314 -6.0361 13 6 2.0323 -0.7104 1.2305 14 8 2.6322 -1.7590 1.1228 15 7 1.8150 -0.1805 2.4505 16 6 0.9628 1.0237 2.5935 17 6 -0.3726 0.6497 3.0853 18 6 -0.3008 -0.0810 4.4367 19 7 0.0877 -1.4390 4.1852 20 6 -0.8803 -2.3610 3.8889 21 1 -1.8211 -2.0397 3.4671 22 6 -0.6523 -3.7088 4.1307 23 7 -1.3023 -4.6206 3.4391 24 14 0.5771 -4.2283 5.4377 25 1 1.8974 -4.4763 4.8048 26 1 0.1030 -5.4715 6.0970 27 1 0.7083 -3.1500 6.4503 28 6 1.5086 -1.8791 4.2420 29 6 2.4089 -0.7836 3.6107 30 1 -0.3633 -1.0210 0.1167 31 1 -0.3633 0.6116 0.8258 32 1 -0.3633 0.4094 -0.9426 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7197 -1.2952 35 1 0.5490 0.1472 -2.5390 36 1 2.0699 1.0676 -2.4494 37 1 0.7720 1.6204 -4.0042 38 1 0.2806 2.6622 -6.1795 39 1 1.0490 1.5937 -8.2594 40 1 2.3184 -0.5131 -8.1689 41 1 2.8223 -1.5560 -5.9970 42 1 0.8662 1.5144 1.6250 43 1 1.4285 1.7100 3.3007 44 1 -0.8504 -0.0023 2.3542 45 1 -0.9726 1.5524 3.2012 46 1 -1.2780 -0.0605 4.9191 47 1 0.4371 0.4007 5.0783 48 1 -1.8845 -4.3533 2.7108 49 1 1.7985 -2.0385 5.2806 50 1 1.6236 -2.8092 3.6855 51 1 3.3619 -1.2302 3.3272 52 1 2.5907 -0.0096 4.3565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198412689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:51 Heat of formation + Delta-G solvation = -36.865133 kcal Electronic energy + Delta-G solvation = -31374.843285 eV Core-core repulsion = 27339.823824 eV Total energy + Delta-G solvation = -4035.019461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.63346 -41.01200 -38.92700 -38.41159 -36.49217 -35.96784 -33.99947 -33.43451 -31.98601 -31.18419 -29.90268 -29.20783 -27.40870 -26.34580 -25.08754 -24.23441 -23.50708 -22.95149 -21.91007 -21.58960 -19.78149 -19.34859 -19.07731 -18.32994 -17.60262 -17.19294 -17.01793 -16.79930 -16.56936 -16.32731 -15.91722 -15.65055 -15.38941 -15.19072 -15.00067 -14.81109 -14.40855 -14.35037 -14.22970 -14.10427 -13.82927 -13.74562 -13.47612 -13.25521 -13.14725 -12.74555 -12.64839 -12.46258 -12.41070 -12.19856 -12.14648 -11.95528 -11.91333 -11.68276 -11.65037 -11.58570 -11.46486 -11.33293 -10.67936 -10.62823 -9.94798 -9.59162 -9.17197 -8.94934 -8.57416 -5.46096 0.39802 0.49552 1.38326 1.48233 1.61369 1.65408 1.97525 2.35421 2.54673 2.85456 3.03180 3.36994 3.44881 3.72336 3.82735 3.86114 3.96840 3.98856 4.09201 4.12420 4.15676 4.21629 4.22555 4.28818 4.31946 4.43277 4.49274 4.50909 4.54949 4.62143 4.67588 4.71189 4.77341 4.79045 4.84021 4.89128 4.94800 4.96245 4.99906 5.09416 5.14359 5.21283 5.26001 5.37791 5.48737 5.55582 5.60721 5.78604 5.79932 5.88397 6.27855 6.45976 6.48365 6.90325 7.25684 7.72989 8.04839 8.85480 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002412 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.501153 B =11604.129266 C =12070.227124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 H 0.141 0.859 4 C -0.094 4.094 5 C 0.067 3.933 6 O -0.340 6.340 7 C 0.106 3.894 8 C -0.218 4.218 9 C -0.085 4.085 10 C -0.165 4.165 11 C -0.085 4.085 12 C -0.178 4.178 13 C 0.506 3.494 14 O -0.594 6.594 15 N -0.589 5.589 16 C 0.112 3.888 17 C -0.170 4.170 18 C 0.151 3.849 19 N -0.608 5.608 20 C -0.319 4.319 21 H 0.034 0.966 22 C -0.073 4.073 23 N -0.960 5.960 24 Si 1.093 2.907 25 H -0.293 1.293 26 H -0.310 1.310 27 H -0.255 1.255 28 C 0.103 3.897 29 C 0.109 3.891 30 H 0.019 0.981 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.042 0.958 45 H 0.100 0.900 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.246 0.754 49 H 0.046 0.954 50 H 0.026 0.974 51 H 0.067 0.933 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 23.235 -14.733 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 H 0.159 0.841 4 C -0.133 4.133 5 C -0.008 4.008 6 O -0.255 6.255 7 C 0.061 3.939 8 C -0.237 4.237 9 C -0.102 4.102 10 C -0.183 4.183 11 C -0.103 4.103 12 C -0.197 4.197 13 C 0.296 3.704 14 O -0.475 6.475 15 N -0.319 5.319 16 C -0.008 4.008 17 C -0.210 4.210 18 C 0.024 3.976 19 N -0.332 5.332 20 C -0.449 4.449 21 H 0.052 0.948 22 C -0.268 4.268 23 N -0.602 5.602 24 Si 0.920 3.080 25 H -0.221 1.221 26 H -0.239 1.239 27 H -0.179 1.179 28 C -0.023 4.023 29 C -0.017 4.017 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.060 0.940 45 H 0.118 0.882 46 H 0.056 0.944 47 H 0.087 0.913 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.085 0.915 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.873 21.294 -13.908 26.624 hybrid contribution -1.210 -0.007 -0.663 1.379 sum 6.663 21.287 -14.571 26.643 Atomic orbital electron populations 1.22212 0.92184 1.01721 1.05050 1.21118 0.97918 1.01734 0.90238 0.84103 1.21162 1.01748 0.98748 0.91602 1.22918 0.99867 0.96264 0.81713 1.86044 1.74876 1.51235 1.13303 1.19385 0.95974 0.93193 0.85384 1.21549 1.04429 0.96887 1.00802 1.21346 0.97556 0.99910 0.91426 1.21456 1.00651 0.96661 0.99530 1.21293 0.96565 0.95444 0.96951 1.20727 1.05615 1.02484 0.90852 1.21225 0.78503 0.84548 0.86147 1.90675 1.44841 1.24625 1.87391 1.47548 1.49396 1.29726 1.05195 1.21246 0.89983 0.85248 1.04342 1.21892 0.98200 1.01257 0.99700 1.20599 0.98591 0.83437 0.94923 1.44020 1.00798 1.06363 1.81996 1.20008 0.97652 0.89388 1.37824 0.94776 1.27167 1.03525 0.92549 1.03519 1.70963 1.32427 1.35653 1.21204 0.83497 0.73732 0.75032 0.75738 1.22116 1.23926 1.17907 1.22552 0.84684 0.97278 0.97795 1.21548 0.95145 0.96667 0.88346 0.96199 0.88980 0.88706 0.91414 0.93797 0.90478 0.89100 0.83869 0.83211 0.83411 0.83251 0.85688 0.87123 0.87707 0.93953 0.88179 0.94354 0.91265 0.94490 0.93616 0.95521 0.91504 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.14 71.98 0.59 -3.17 16 2 C -0.09 -2.19 1.90 -11.54 -0.02 -2.21 16 3 H 0.14 2.12 7.43 -2.38 -0.02 2.11 16 4 C -0.09 -2.59 4.36 30.59 0.13 -2.45 16 5 C 0.07 1.38 4.51 71.98 0.32 1.71 16 6 O -0.34 -9.01 10.14 -92.35 -0.94 -9.94 16 7 C 0.11 2.44 6.69 22.51 0.15 2.59 16 8 C -0.22 -3.89 9.04 22.37 0.20 -3.69 16 9 C -0.08 -1.21 10.04 22.25 0.22 -0.99 16 10 C -0.16 -2.27 10.04 22.28 0.22 -2.05 16 11 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 12 C -0.18 -3.79 9.99 22.37 0.22 -3.56 16 13 C 0.51 17.84 6.99 87.66 0.61 18.46 16 14 O -0.59 -27.64 15.61 -3.03 -0.05 -27.69 16 15 N -0.59 -18.07 2.46 -830.49 -2.04 -20.12 16 16 C 0.11 2.30 5.02 84.23 0.42 2.73 16 17 C -0.17 -4.49 4.96 29.04 0.14 -4.35 16 18 C 0.15 5.14 5.63 87.21 0.49 5.63 16 19 N -0.61 -27.81 2.33 -697.40 -1.62 -29.43 16 20 C -0.32 -18.28 9.53 84.04 0.80 -17.48 16 21 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 22 C -0.07 -4.52 5.09 84.86 0.43 -4.09 16 23 N -0.96 -64.64 13.70 21.65 0.30 -64.34 16 24 Si 1.09 56.49 24.48 68.60 1.68 58.17 16 25 H -0.29 -14.97 6.77 99.48 0.67 -14.30 16 26 H -0.31 -16.35 7.11 99.48 0.71 -15.65 16 27 H -0.25 -11.62 6.55 99.48 0.65 -10.96 16 28 C 0.10 4.47 4.56 86.68 0.40 4.87 16 29 C 0.11 3.60 5.21 87.67 0.46 4.06 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 2.00 3.47 -2.39 -0.01 1.99 16 32 H 0.09 1.65 6.28 -2.39 -0.01 1.64 16 33 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.40 5.94 -2.39 -0.01 1.39 16 36 H 0.09 1.34 7.68 -2.39 -0.02 1.32 16 37 H 0.14 1.96 6.30 -2.91 -0.02 1.94 16 38 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.11 1.59 4.82 -2.39 -0.01 1.58 16 43 H 0.10 1.48 8.05 -2.39 -0.02 1.47 16 44 H 0.04 1.45 5.99 -2.39 -0.01 1.44 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 47 H 0.07 1.92 7.59 -2.39 -0.02 1.90 16 48 H 0.25 16.72 8.73 -92.71 -0.81 15.91 16 49 H 0.05 1.89 5.93 -2.39 -0.01 1.87 16 50 H 0.03 1.42 5.60 -2.39 -0.01 1.41 16 51 H 0.07 2.33 7.47 -2.39 -0.02 2.31 16 52 H 0.11 2.64 7.72 -2.38 -0.02 2.62 16 Total: -1.00 -86.57 390.64 4.14 -82.43 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.79 Total: 16.06 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.03 Total: -5.14 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.37 Total: -113.89 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.98 Total: -37.63 kcal Atomic # 14 Polarization: 56.49 SS G_CDS: 1.68 Total: 58.17 kcal Total: -86.57 4.14 -82.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198412689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.567 kcal (2) G-P(sol) polarization free energy of solvation -86.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds