Wall clock time and date at job start Sat Apr 11 2020 08:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00278 * 2 1 4 4 C 1.38752 * 120.05286 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94368 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05423 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11147 * 359.74441 * 6 5 4 8 8 C 1.38164 * 120.05311 * 0.51097 * 7 6 5 9 9 C 1.50696 * 120.02757 * 179.76998 * 8 7 6 10 10 H 1.09000 * 109.47361 * 135.82919 * 9 8 7 11 11 C 1.53002 * 109.47230 * 15.82714 * 9 8 7 12 12 N 1.46499 * 109.47530 * 184.99966 * 11 9 8 13 13 C 1.34775 * 120.00208 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00185 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99820 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.46921 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47056 * 55.00228 * 16 15 13 18 18 C 1.52995 * 109.47017 * 294.99991 * 16 15 13 19 19 C 1.52999 * 109.47018 * 175.00173 * 16 15 13 20 20 C 1.53001 * 117.49816 * 248.61926 * 19 16 15 21 21 C 1.52998 * 60.00262 * 252.50894 * 20 19 16 22 22 N 1.46502 * 109.47184 * 255.83191 * 9 8 7 23 23 C 1.36938 * 120.00103 * 58.54270 * 22 9 8 24 24 H 1.07997 * 119.99667 * 3.41558 * 23 22 9 25 25 C 1.38813 * 119.99823 * 183.41367 * 23 22 9 26 26 N 1.31622 * 119.99507 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00217 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47442 * 89.99825 * 27 25 23 29 29 H 1.48499 * 109.46948 * 210.00082 * 27 25 23 30 30 H 1.48502 * 109.47174 * 329.99308 * 27 25 23 31 31 H 1.09003 * 109.47512 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47559 * 300.00189 * 1 2 3 33 33 H 1.09007 * 109.46757 * 60.00278 * 1 2 3 34 34 H 1.07998 * 120.02768 * 359.95031 * 4 3 2 35 35 H 1.08001 * 119.97463 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.94068 * 180.02562 * 6 5 4 37 37 H 1.07993 * 119.97254 * 180.26118 * 7 6 5 38 38 H 1.09004 * 109.46621 * 65.00547 * 11 9 8 39 39 H 1.08998 * 109.47050 * 305.00360 * 11 9 8 40 40 H 0.97000 * 119.99763 * 0.02562 * 12 11 9 41 41 H 1.09003 * 109.47454 * 60.00441 * 15 13 12 42 42 H 1.08998 * 109.47382 * 300.00048 * 15 13 12 43 43 H 1.09000 * 109.47401 * 300.00026 * 18 16 15 44 44 H 1.09001 * 109.47471 * 180.02562 * 18 16 15 45 45 H 1.08998 * 109.47388 * 59.99764 * 18 16 15 46 46 H 1.09002 * 115.55338 * 34.32865 * 19 16 15 47 47 H 1.08999 * 117.49928 * 0.02562 * 20 19 16 48 48 H 1.09005 * 117.50054 * 145.01969 * 20 19 16 49 49 H 1.08990 * 117.50241 * 252.51204 * 21 20 19 50 50 H 1.09003 * 117.49853 * 107.48209 * 21 20 19 51 51 H 0.97001 * 119.99679 * 238.54328 * 22 9 8 52 52 H 0.96998 * 119.99512 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0069 8 6 3.4311 1.2847 0.0011 9 6 4.2537 0.0221 0.0017 10 1 3.8312 -0.6865 0.7141 11 6 5.6931 0.3512 0.4024 12 7 6.5195 -0.8530 0.2878 13 6 7.8315 -0.8014 0.5921 14 8 8.3279 0.2417 0.9613 15 6 8.6816 -2.0401 0.4737 16 6 10.1208 -1.7112 0.8758 17 1 10.1281 -1.2728 1.8737 18 6 10.7145 -0.7157 -0.1229 19 6 10.9559 -2.9931 0.8757 20 6 11.4445 -3.5180 2.2273 21 6 12.4337 -2.8737 1.2540 22 7 4.2430 -0.5684 -1.3391 23 6 4.7010 0.1535 -2.4088 24 1 5.1211 1.1367 -2.2566 25 6 4.6254 -0.3786 -3.6887 26 7 5.0652 0.3155 -4.7169 27 14 3.8981 -2.0789 -3.9519 28 1 2.4359 -1.9616 -4.1827 29 1 4.5365 -2.7128 -5.1333 30 1 4.1441 -2.9141 -2.7489 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2128 2.3203 0.0001 35 1 1.3340 4.5113 0.0011 36 1 3.7923 4.6380 0.0024 37 1 5.1344 2.5750 0.0116 38 1 5.7110 0.7075 1.4324 39 1 6.0857 1.1254 -0.2568 40 1 6.1225 -1.6874 -0.0070 41 1 8.6641 -2.3957 -0.5565 42 1 8.2888 -2.8147 1.1322 43 1 10.7072 -1.1541 -1.1208 44 1 11.7399 -0.4817 0.1632 45 1 10.1195 0.1975 -0.1230 46 1 10.6886 -3.7284 0.1168 47 1 11.1707 -2.9502 3.1165 48 1 11.4986 -4.5988 2.3578 49 1 13.1383 -3.5305 0.7442 50 1 12.8108 -1.8817 1.5028 51 1 3.9114 -1.4706 -1.4690 52 1 5.0127 -0.0564 -5.6112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198994366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:58 Heat of formation + Delta-G solvation = -14.108686 kcal Electronic energy + Delta-G solvation = -31023.522940 eV Core-core repulsion = 26989.490272 eV Total energy + Delta-G solvation = -4034.032668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.98478 -39.46841 -37.86422 -37.20469 -35.88533 -33.40983 -32.99732 -31.96509 -30.24304 -29.64818 -28.45601 -27.20417 -26.45374 -24.37207 -23.38682 -22.38503 -22.35004 -21.51600 -20.05309 -19.78135 -19.49270 -18.05562 -17.58677 -16.65051 -16.06695 -15.74737 -15.50048 -15.30193 -15.12580 -14.90870 -14.73135 -14.34760 -14.32790 -13.85412 -13.45103 -13.34765 -13.04269 -12.92398 -12.75260 -12.60464 -12.31467 -12.22292 -11.82205 -11.69867 -11.68355 -11.64186 -11.20985 -11.08036 -11.01700 -10.95695 -10.78745 -10.68260 -10.57432 -10.45244 -10.33300 -10.05981 -9.92811 -9.55777 -9.29346 -9.00882 -8.43362 -8.38114 -7.71707 -7.30981 -5.76091 -3.13455 1.79125 1.91716 3.12478 3.32142 3.38216 3.43464 3.63018 3.65118 3.77819 4.21548 4.57507 4.62021 4.80002 4.86423 5.00946 5.10045 5.13919 5.25719 5.27877 5.33704 5.35678 5.41460 5.44417 5.51384 5.52845 5.55748 5.58706 5.66186 5.68801 5.79642 5.82515 5.84804 5.86972 5.95726 5.97663 6.01184 6.02623 6.10299 6.24314 6.30414 6.45188 6.47905 6.59817 6.64582 6.74133 6.87272 7.00040 7.08208 7.23689 7.80546 7.97311 8.06875 8.41222 8.74544 9.17827 9.89563 10.07532 11.41888 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.003122 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.813190 B = 8965.626605 C =10143.336523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.141 3.859 4 C -0.214 4.214 5 C -0.093 4.093 6 C -0.157 4.157 7 C -0.073 4.073 8 C -0.094 4.094 9 C 0.214 3.786 10 H 0.072 0.928 11 C 0.109 3.891 12 N -0.705 5.705 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.135 4.135 16 C -0.041 4.041 17 H 0.076 0.924 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.183 4.183 21 C -0.179 4.179 22 N -0.732 5.732 23 C -0.234 4.234 24 H 0.092 0.908 25 C 0.008 3.992 26 N -0.931 5.931 27 Si 0.882 3.118 28 H -0.287 1.287 29 H -0.294 1.294 30 H -0.278 1.278 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.399 0.601 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.364 0.636 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -4.101 13.990 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.095 3.905 4 C -0.233 4.233 5 C -0.112 4.112 6 C -0.175 4.175 7 C -0.092 4.092 8 C -0.097 4.097 9 C 0.103 3.897 10 H 0.090 0.910 11 C -0.017 4.017 12 N -0.355 5.355 13 C 0.298 3.702 14 O -0.431 6.431 15 C -0.176 4.176 16 C -0.060 4.060 17 H 0.094 0.906 18 C -0.208 4.208 19 C -0.165 4.165 20 C -0.220 4.220 21 C -0.216 4.216 22 N -0.373 5.373 23 C -0.364 4.364 24 H 0.109 0.891 25 C -0.187 4.187 26 N -0.578 5.578 27 Si 0.713 3.287 28 H -0.214 1.214 29 H -0.221 1.221 30 H -0.205 1.205 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.234 0.766 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.112 0.888 51 H 0.198 0.802 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.117 -3.401 14.063 14.511 hybrid contribution -1.156 -1.420 -0.855 2.021 sum -0.039 -4.822 13.207 14.060 Atomic orbital electron populations 1.22955 0.79557 1.03280 1.00795 1.86097 1.20257 1.27084 1.88630 1.18723 0.91703 0.83791 0.96251 1.21067 0.99311 0.92627 1.10313 1.20759 0.94664 0.96492 0.99258 1.20968 0.93826 0.98246 1.04506 1.21031 1.00192 0.91145 0.96842 1.19738 0.90676 0.96548 1.02774 1.19098 0.90969 0.91281 0.88311 0.90972 1.21907 0.92268 0.87784 0.99735 1.45740 1.08802 1.13758 1.67196 1.20502 0.82301 0.90352 0.77077 1.90620 1.72482 1.32240 1.47737 1.21699 0.95244 0.96635 1.03975 1.20420 0.91705 0.93219 1.00644 0.90605 1.21923 1.00520 1.00269 0.98055 1.22395 0.95966 0.99586 0.98525 1.23018 1.04701 1.00391 0.93923 1.22909 0.92532 1.02304 1.03877 1.42743 1.76435 1.15151 1.02964 1.18951 1.32391 1.00570 0.84478 0.89054 1.24637 1.01022 0.97614 0.95447 1.69703 1.52342 1.37337 0.98426 0.86608 0.79199 0.85851 0.77023 1.21374 1.22064 1.20457 0.88840 0.93288 0.92957 0.86300 0.86677 0.86518 0.85238 0.92564 0.90751 0.76627 0.88836 0.89349 0.93200 0.93279 0.90303 0.87845 0.88876 0.89150 0.89092 0.88773 0.80228 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.12 9.81 -19.42 -0.19 -5.32 16 3 C 0.14 2.48 6.66 -39.22 -0.26 2.22 16 4 C -0.21 -3.34 9.04 -39.43 -0.36 -3.69 16 5 C -0.09 -1.39 10.04 -39.60 -0.40 -1.79 16 6 C -0.16 -2.49 10.04 -39.56 -0.40 -2.89 16 7 C -0.07 -1.30 8.91 -39.61 -0.35 -1.65 16 8 C -0.09 -1.73 4.73 -104.48 -0.49 -2.23 16 9 C 0.21 3.89 2.70 -69.08 -0.19 3.70 16 10 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16 11 C 0.11 1.93 4.00 -4.04 -0.02 1.91 16 12 N -0.71 -11.64 5.39 -60.29 -0.32 -11.97 16 13 C 0.51 8.43 7.55 -10.99 -0.08 8.35 16 14 O -0.55 -10.70 13.96 5.56 0.08 -10.63 16 15 C -0.14 -1.73 5.16 -27.88 -0.14 -1.87 16 16 C -0.04 -0.51 2.19 -90.62 -0.20 -0.71 16 17 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 18 C -0.15 -2.07 8.77 37.15 0.33 -1.75 16 19 C -0.15 -1.52 5.15 -90.62 -0.47 -1.98 16 20 C -0.18 -1.68 10.18 -26.73 -0.27 -1.96 16 21 C -0.18 -1.69 9.73 -26.73 -0.26 -1.95 16 22 N -0.73 -15.78 4.53 -54.55 -0.25 -16.03 16 23 C -0.23 -6.15 9.31 -15.06 -0.14 -6.29 16 24 H 0.09 2.65 7.30 -52.49 -0.38 2.27 16 25 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 26 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 27 Si 0.88 21.39 27.77 -169.99 -4.72 16.67 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.14 6.47 56.52 0.37 -5.77 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 34 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.26 5.83 -52.49 -0.31 1.95 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.53 5.80 -51.93 -0.30 1.22 16 40 H 0.40 6.12 8.14 -40.82 -0.33 5.79 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.60 7.29 -51.93 -0.38 0.23 16 45 H 0.08 1.31 5.95 -51.93 -0.31 1.00 16 46 H 0.10 1.03 8.11 -51.93 -0.42 0.60 16 47 H 0.09 0.85 8.05 -51.93 -0.42 0.44 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.90 7.61 -51.93 -0.39 0.51 16 51 H 0.36 7.79 5.87 -40.82 -0.24 7.55 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -32.70 414.25 -9.59 -42.29 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -8.40 Total: 17.67 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.80 Total: -11.09 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.20 Total: -55.85 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.11 Total: -15.94 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.72 Total: 16.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.70 -9.59 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.181 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds