Wall clock time and date at job start Sat Apr 11 2020 08:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00278 * 2 1 4 4 C 1.38752 * 120.05286 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94368 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05423 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11147 * 359.74441 * 6 5 4 8 8 C 1.38164 * 120.05311 * 0.51097 * 7 6 5 9 9 C 1.50696 * 120.02757 * 179.76998 * 8 7 6 10 10 H 1.09000 * 109.47361 * 135.82919 * 9 8 7 11 11 C 1.53002 * 109.47230 * 15.82714 * 9 8 7 12 12 N 1.46499 * 109.47530 * 184.99966 * 11 9 8 13 13 C 1.34775 * 120.00208 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00185 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99820 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.46921 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47056 * 55.00228 * 16 15 13 18 18 C 1.52995 * 109.47017 * 294.99991 * 16 15 13 19 19 C 1.52999 * 109.47018 * 175.00173 * 16 15 13 20 20 C 1.53001 * 117.49816 * 248.61926 * 19 16 15 21 21 C 1.52998 * 60.00262 * 252.50894 * 20 19 16 22 22 N 1.46502 * 109.47184 * 255.83191 * 9 8 7 23 23 C 1.36938 * 120.00103 * 58.54270 * 22 9 8 24 24 H 1.07997 * 119.99667 * 3.41558 * 23 22 9 25 25 C 1.38813 * 119.99823 * 183.41367 * 23 22 9 26 26 N 1.31622 * 119.99507 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00217 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47442 * 89.99825 * 27 25 23 29 29 H 1.48499 * 109.46948 * 210.00082 * 27 25 23 30 30 H 1.48502 * 109.47174 * 329.99308 * 27 25 23 31 31 H 1.09003 * 109.47512 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47559 * 300.00189 * 1 2 3 33 33 H 1.09007 * 109.46757 * 60.00278 * 1 2 3 34 34 H 1.07998 * 120.02768 * 359.95031 * 4 3 2 35 35 H 1.08001 * 119.97463 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.94068 * 180.02562 * 6 5 4 37 37 H 1.07993 * 119.97254 * 180.26118 * 7 6 5 38 38 H 1.09004 * 109.46621 * 65.00547 * 11 9 8 39 39 H 1.08998 * 109.47050 * 305.00360 * 11 9 8 40 40 H 0.97000 * 119.99763 * 0.02562 * 12 11 9 41 41 H 1.09003 * 109.47454 * 60.00441 * 15 13 12 42 42 H 1.08998 * 109.47382 * 300.00048 * 15 13 12 43 43 H 1.09000 * 109.47401 * 300.00026 * 18 16 15 44 44 H 1.09001 * 109.47471 * 180.02562 * 18 16 15 45 45 H 1.08998 * 109.47388 * 59.99764 * 18 16 15 46 46 H 1.09002 * 115.55338 * 34.32865 * 19 16 15 47 47 H 1.08999 * 117.49928 * 0.02562 * 20 19 16 48 48 H 1.09005 * 117.50054 * 145.01969 * 20 19 16 49 49 H 1.08990 * 117.50241 * 252.51204 * 21 20 19 50 50 H 1.09003 * 117.49853 * 107.48209 * 21 20 19 51 51 H 0.97001 * 119.99679 * 238.54328 * 22 9 8 52 52 H 0.96998 * 119.99512 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0069 8 6 3.4311 1.2847 0.0011 9 6 4.2537 0.0221 0.0017 10 1 3.8312 -0.6865 0.7141 11 6 5.6931 0.3512 0.4024 12 7 6.5195 -0.8530 0.2878 13 6 7.8315 -0.8014 0.5921 14 8 8.3279 0.2417 0.9613 15 6 8.6816 -2.0401 0.4737 16 6 10.1208 -1.7112 0.8758 17 1 10.1281 -1.2728 1.8737 18 6 10.7145 -0.7157 -0.1229 19 6 10.9559 -2.9931 0.8757 20 6 11.4445 -3.5180 2.2273 21 6 12.4337 -2.8737 1.2540 22 7 4.2430 -0.5684 -1.3391 23 6 4.7010 0.1535 -2.4088 24 1 5.1211 1.1367 -2.2566 25 6 4.6254 -0.3786 -3.6887 26 7 5.0652 0.3155 -4.7169 27 14 3.8981 -2.0789 -3.9519 28 1 2.4359 -1.9616 -4.1827 29 1 4.5365 -2.7128 -5.1333 30 1 4.1441 -2.9141 -2.7489 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2128 2.3203 0.0001 35 1 1.3340 4.5113 0.0011 36 1 3.7923 4.6380 0.0024 37 1 5.1344 2.5750 0.0116 38 1 5.7110 0.7075 1.4324 39 1 6.0857 1.1254 -0.2568 40 1 6.1225 -1.6874 -0.0070 41 1 8.6641 -2.3957 -0.5565 42 1 8.2888 -2.8147 1.1322 43 1 10.7072 -1.1541 -1.1208 44 1 11.7399 -0.4817 0.1632 45 1 10.1195 0.1975 -0.1230 46 1 10.6886 -3.7284 0.1168 47 1 11.1707 -2.9502 3.1165 48 1 11.4986 -4.5988 2.3578 49 1 13.1383 -3.5305 0.7442 50 1 12.8108 -1.8817 1.5028 51 1 3.9114 -1.4706 -1.4690 52 1 5.0127 -0.0564 -5.6112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198994366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:56 Heat of formation + Delta-G solvation = -34.441185 kcal Electronic energy + Delta-G solvation = -31024.404623 eV Core-core repulsion = 26989.490272 eV Total energy + Delta-G solvation = -4034.914351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.27459 -40.72660 -38.88268 -38.40937 -37.34886 -35.05818 -34.05371 -33.68771 -31.91016 -30.90719 -29.75907 -28.31143 -27.71304 -25.98240 -24.58576 -23.82859 -23.06804 -22.76694 -21.33515 -21.16256 -20.56649 -19.97187 -18.85562 -17.91179 -17.34257 -17.01039 -16.71582 -16.50339 -16.40730 -16.16303 -16.07914 -15.97526 -15.46760 -15.21974 -14.69324 -14.65647 -14.46099 -14.27957 -14.03307 -13.90714 -13.77204 -13.51800 -13.20058 -13.02058 -12.88463 -12.75411 -12.60334 -12.39919 -12.22620 -12.18199 -12.01167 -11.89967 -11.79109 -11.75164 -11.69421 -11.57737 -11.15655 -10.98911 -10.76164 -10.59702 -9.86118 -9.72800 -9.32448 -8.92534 -7.91927 -5.26489 0.49743 0.63336 1.39485 1.44879 1.51219 1.79791 2.39905 2.52167 2.55022 2.91236 2.96885 3.38918 3.69976 3.76579 3.82338 3.85483 3.99239 4.06480 4.12862 4.23246 4.25439 4.31422 4.36422 4.41112 4.43193 4.44569 4.54966 4.58892 4.63477 4.67263 4.75642 4.76158 4.78756 4.83335 4.84333 4.94989 5.03854 5.08918 5.12442 5.17852 5.26865 5.32742 5.43061 5.47249 5.51910 5.59125 5.66850 5.74047 5.87441 5.98723 6.29119 6.61100 6.74231 7.15521 7.42260 7.86592 8.09071 9.29792 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.003122 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.813190 B = 8965.626605 C =10143.336523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.128 3.872 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.168 4.168 7 C -0.092 4.092 8 C -0.124 4.124 9 C 0.219 3.781 10 H 0.095 0.905 11 C 0.121 3.879 12 N -0.705 5.705 13 C 0.504 3.496 14 O -0.586 6.586 15 C -0.128 4.128 16 C -0.036 4.036 17 H 0.063 0.937 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.174 4.174 21 C -0.181 4.181 22 N -0.729 5.729 23 C -0.197 4.197 24 H 0.052 0.948 25 C -0.064 4.064 26 N -0.988 5.988 27 Si 0.949 3.051 28 H -0.291 1.291 29 H -0.306 1.306 30 H -0.239 1.239 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.407 0.593 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.370 0.630 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -6.306 15.737 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.082 3.918 4 C -0.235 4.235 5 C -0.107 4.107 6 C -0.187 4.187 7 C -0.111 4.111 8 C -0.127 4.127 9 C 0.110 3.890 10 H 0.113 0.887 11 C -0.005 4.005 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.468 6.468 15 C -0.167 4.167 16 C -0.055 4.055 17 H 0.082 0.918 18 C -0.205 4.205 19 C -0.172 4.172 20 C -0.211 4.211 21 C -0.218 4.218 22 N -0.370 5.370 23 C -0.328 4.328 24 H 0.070 0.930 25 C -0.255 4.255 26 N -0.639 5.639 27 Si 0.778 3.222 28 H -0.218 1.218 29 H -0.234 1.234 30 H -0.163 1.163 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.243 0.757 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.131 0.869 47 H 0.109 0.891 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.107 0.893 51 H 0.204 0.796 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.407 -5.635 15.887 16.862 hybrid contribution -0.719 -0.573 -1.282 1.577 sum -1.126 -6.208 14.605 15.910 Atomic orbital electron populations 1.23270 0.77228 1.05150 1.01792 1.86051 1.22716 1.26734 1.88541 1.18902 0.91594 0.84989 0.96291 1.21454 1.00816 0.92099 1.09174 1.21196 0.94386 0.97809 0.97355 1.21270 0.94711 0.98403 1.04275 1.21102 0.99959 0.92156 0.97895 1.19773 0.91620 0.96445 1.04896 1.19212 0.90998 0.91980 0.86772 0.88672 1.21658 0.92021 0.87535 0.99299 1.45765 1.08989 1.13556 1.67168 1.21262 0.82326 0.91200 0.76023 1.90610 1.73025 1.33929 1.49188 1.21736 0.94673 0.95230 1.05097 1.20337 0.91892 0.93990 0.99290 0.91811 1.21870 1.00672 0.99250 0.98739 1.22292 0.96290 0.98664 0.99925 1.23085 1.03578 1.01306 0.93136 1.22986 0.92274 1.02475 1.04026 1.42610 1.76197 1.15097 1.03117 1.18730 1.29581 0.98873 0.85628 0.93005 1.25379 1.02845 1.02043 0.95193 1.69906 1.55508 1.39750 0.98780 0.85496 0.77527 0.81393 0.77774 1.21798 1.23360 1.16327 0.86700 0.91080 0.93047 0.83417 0.83243 0.84680 0.86527 0.91642 0.94415 0.75674 0.88178 0.86293 0.93186 0.92185 0.93777 0.86894 0.89057 0.87522 0.87810 0.89323 0.79627 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.33 -10.21 9.81 -92.42 -0.91 -11.12 16 3 C 0.13 4.35 6.66 22.51 0.15 4.50 16 4 C -0.22 -6.27 9.04 22.36 0.20 -6.06 16 5 C -0.09 -2.49 10.04 22.26 0.22 -2.26 16 6 C -0.17 -5.29 10.04 22.28 0.22 -5.07 16 7 C -0.09 -3.38 8.91 22.25 0.20 -3.18 16 8 C -0.12 -4.61 4.73 -19.77 -0.09 -4.70 16 9 C 0.22 7.94 2.70 44.24 0.12 8.06 16 10 H 0.10 3.01 7.97 -2.39 -0.02 2.99 16 11 C 0.12 4.42 4.00 86.38 0.35 4.77 16 12 N -0.70 -23.25 5.39 -463.06 -2.49 -25.74 16 13 C 0.50 16.78 7.55 87.66 0.66 17.44 16 14 O -0.59 -23.72 13.96 -3.03 -0.04 -23.76 16 15 C -0.13 -3.11 5.16 29.85 0.15 -2.96 16 16 C -0.04 -0.88 2.19 -10.79 -0.02 -0.90 16 17 H 0.06 1.70 7.71 -2.39 -0.02 1.68 16 18 C -0.15 -4.17 8.77 71.98 0.63 -3.54 16 19 C -0.15 -2.87 5.15 -10.79 -0.06 -2.93 16 20 C -0.17 -2.78 10.18 30.59 0.31 -2.47 16 21 C -0.18 -3.07 9.73 30.60 0.30 -2.77 16 22 N -0.73 -31.08 4.53 -326.50 -1.48 -32.55 16 23 C -0.20 -10.61 9.31 84.03 0.78 -9.82 16 24 H 0.05 3.19 7.30 -2.91 -0.02 3.17 16 25 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 26 N -0.99 -63.18 13.97 21.65 0.30 -62.88 16 27 Si 0.95 44.17 27.77 68.60 1.91 46.07 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 29 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 30 H -0.24 -9.45 6.47 99.48 0.64 -8.81 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 33 H 0.05 1.09 7.66 -2.38 -0.02 1.07 16 34 H 0.15 3.31 6.30 -2.91 -0.02 3.29 16 35 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.12 4.43 5.83 -2.91 -0.02 4.41 16 38 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.04 1.66 5.80 -2.39 -0.01 1.65 16 40 H 0.41 11.98 8.14 -92.71 -0.75 11.22 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.50 7.29 -2.39 -0.02 1.48 16 45 H 0.04 1.55 5.95 -2.39 -0.01 1.53 16 46 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 47 H 0.09 1.50 8.05 -2.39 -0.02 1.48 16 48 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.09 1.60 7.61 -2.39 -0.02 1.58 16 51 H 0.37 15.04 5.87 -92.71 -0.54 14.49 16 52 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -74.66 414.25 2.56 -72.10 By element: Atomic # 1 Polarization: 51.89 SS G_CDS: -0.43 Total: 51.46 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.71 Total: -13.57 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -3.67 Total: -121.18 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.95 Total: -34.88 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.91 Total: 46.07 kcal Total: -74.66 2.56 -72.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.654 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds