Wall clock time and date at job start Sat Apr 11 2020 08:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 116.99558 * 2 1 4 4 C 1.38756 * 120.05623 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94172 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05533 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11312 * 359.74709 * 6 5 4 8 8 C 1.38164 * 120.05221 * 0.50439 * 7 6 5 9 9 C 1.50706 * 120.02635 * 179.77090 * 8 7 6 10 10 H 1.09000 * 109.46960 * 219.72784 * 9 8 7 11 11 C 1.52997 * 109.47290 * 99.72531 * 9 8 7 12 12 N 1.46497 * 109.46983 * 185.00167 * 11 9 8 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.47346 * 305.00026 * 16 15 13 18 18 C 1.53004 * 109.47236 * 64.99766 * 16 15 13 19 19 C 1.52997 * 109.47504 * 184.99949 * 16 15 13 20 20 C 1.52997 * 117.50274 * 128.62093 * 19 16 15 21 21 C 1.52999 * 60.00241 * 252.51028 * 20 19 16 22 22 N 1.46500 * 109.47019 * 339.72431 * 9 8 7 23 23 C 1.36939 * 120.00440 * 274.99998 * 22 9 8 24 24 H 1.08007 * 119.99440 * 0.02562 * 23 22 9 25 25 C 1.38805 * 120.00308 * 179.97438 * 23 22 9 26 26 N 1.31618 * 120.00179 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00108 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47001 * 60.00104 * 27 25 23 29 29 H 1.48501 * 109.47117 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46816 * 300.00357 * 27 25 23 31 31 H 1.09004 * 109.47494 * 60.00154 * 1 2 3 32 32 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47372 * 299.99953 * 1 2 3 34 34 H 1.07991 * 120.02839 * 359.95494 * 4 3 2 35 35 H 1.08001 * 119.97132 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.93918 * 179.97438 * 6 5 4 37 37 H 1.08000 * 119.97391 * 180.25769 * 7 6 5 38 38 H 1.09001 * 109.46832 * 64.99984 * 11 9 8 39 39 H 1.09002 * 109.47153 * 305.00175 * 11 9 8 40 40 H 0.96995 * 120.00423 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 43 43 H 1.09001 * 109.46917 * 300.00567 * 18 16 15 44 44 H 1.09004 * 109.46741 * 59.99889 * 18 16 15 45 45 H 1.09000 * 109.47403 * 180.02562 * 18 16 15 46 46 H 1.09004 * 115.54795 * 274.33275 * 19 16 15 47 47 H 1.09004 * 117.49960 * 0.02562 * 20 19 16 48 48 H 1.09000 * 117.49945 * 145.01956 * 20 19 16 49 49 H 1.08994 * 117.49974 * 252.50732 * 21 20 19 50 50 H 1.09002 * 117.51615 * 107.47832 * 21 20 19 51 51 H 0.97006 * 119.99969 * 94.99832 * 22 9 8 52 52 H 0.97000 * 120.00173 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5173 0.0069 8 6 3.4310 1.2850 0.0011 9 6 4.2537 0.0223 0.0017 10 1 3.7927 -0.7120 -0.6590 11 6 4.3217 -0.5415 1.4223 12 7 5.2178 -1.7002 1.4454 13 6 5.4322 -2.3634 2.5991 14 8 4.8836 -2.0006 3.6181 15 6 6.3544 -3.5550 2.6230 16 6 6.4223 -4.1189 4.0437 17 1 6.7154 -3.3285 4.7348 18 6 5.0488 -4.6620 4.4430 19 6 7.4523 -5.2491 4.0952 20 6 8.5236 -5.1796 5.1853 21 6 8.8971 -4.9056 3.7271 22 7 5.6079 0.3216 -0.4703 23 6 5.8767 0.3400 -1.8129 24 1 5.0902 0.1343 -2.5239 25 6 7.1597 0.6242 -2.2600 26 7 8.1181 0.8753 -1.3936 27 14 7.5262 0.6500 -4.0916 28 1 6.6808 1.6773 -4.7511 29 1 8.9592 0.9760 -4.3051 30 1 7.2301 -0.6833 -4.6745 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2127 2.3203 0.0002 35 1 1.3338 4.5114 0.0011 36 1 3.7920 4.6382 0.0016 37 1 5.1343 2.5754 0.0115 38 1 3.3247 -0.8468 1.7401 39 1 4.7003 0.2242 2.0994 40 1 5.6563 -1.9906 0.6304 41 1 5.9765 -4.3206 1.9455 42 1 7.3515 -3.2492 2.3059 43 1 4.3151 -3.8568 4.4063 44 1 4.7557 -5.4523 3.7520 45 1 5.0970 -5.0633 5.4553 46 1 7.0824 -6.2353 3.8147 47 1 8.4944 -4.3288 5.8661 48 1 8.8586 -6.1202 5.6224 49 1 9.4778 -5.6659 3.2050 50 1 9.1138 -3.8744 3.4480 51 1 6.3143 0.5067 0.1683 52 1 9.0148 1.0735 -1.7060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198994368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:08 Heat of formation + Delta-G solvation = -23.034089 kcal Electronic energy + Delta-G solvation = -30816.676001 eV Core-core repulsion = 26782.256299 eV Total energy + Delta-G solvation = -4034.419702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.98577 -39.52875 -37.80774 -37.17057 -35.80401 -33.53747 -33.00499 -32.00699 -29.74206 -29.68240 -28.53726 -27.13134 -26.61909 -23.92425 -23.32831 -22.62541 -22.32583 -21.55368 -20.21875 -20.06763 -19.41524 -17.69583 -17.39647 -16.64257 -15.95220 -15.86950 -15.62696 -15.41125 -15.11088 -14.97766 -14.61196 -14.42661 -13.99279 -13.82118 -13.52665 -13.27454 -13.21926 -12.89272 -12.79518 -12.68338 -12.38376 -12.16752 -11.80847 -11.70190 -11.61100 -11.28342 -11.21770 -11.11804 -10.96123 -10.87473 -10.79756 -10.75059 -10.71505 -10.47004 -10.22193 -10.17054 -9.97763 -9.75782 -9.34296 -9.04723 -8.51360 -8.32344 -7.72301 -7.12095 -5.85504 -3.16844 1.81663 1.89583 3.06777 3.39298 3.44954 3.45529 3.57032 3.58103 3.83753 4.25178 4.51642 4.61933 4.83321 4.89198 5.04083 5.06558 5.16811 5.23312 5.24476 5.27175 5.31307 5.47780 5.51145 5.52957 5.55442 5.56607 5.61572 5.66153 5.73524 5.75524 5.84923 5.87320 5.89555 5.98937 5.99711 6.06727 6.11353 6.16403 6.28329 6.36007 6.42374 6.46645 6.52267 6.62106 6.74771 6.92997 6.97319 7.18888 7.35746 7.66285 7.76084 8.04302 8.31398 8.69215 9.44153 9.94770 10.32301 11.35742 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007637 B = 0.003502 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.383412 B = 7992.657946 C =10667.519156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.044 4.044 8 C -0.116 4.116 9 C 0.209 3.791 10 H 0.069 0.931 11 C 0.125 3.875 12 N -0.713 5.713 13 C 0.510 3.490 14 O -0.554 6.554 15 C -0.136 4.136 16 C -0.043 4.043 17 H 0.077 0.923 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.181 4.181 21 C -0.182 4.182 22 N -0.716 5.716 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.005 4.005 26 N -0.929 5.929 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.410 0.590 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 -6.667 7.941 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.114 4.114 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.120 4.120 9 C 0.098 3.902 10 H 0.087 0.913 11 C 0.000 4.000 12 N -0.364 5.364 13 C 0.297 3.703 14 O -0.433 6.433 15 C -0.176 4.176 16 C -0.061 4.061 17 H 0.096 0.904 18 C -0.206 4.206 19 C -0.166 4.166 20 C -0.218 4.218 21 C -0.219 4.219 22 N -0.357 5.357 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.201 4.201 26 N -0.577 5.577 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.246 0.754 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.221 0.779 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.894 -6.616 8.457 13.943 hybrid contribution 0.403 0.347 -1.454 1.548 sum -8.492 -6.269 7.003 12.667 Atomic orbital electron populations 1.22956 0.79427 1.03316 1.00854 1.86088 1.20440 1.27193 1.88941 1.18951 0.91974 0.83801 0.97694 1.21047 0.99187 0.92629 1.10941 1.20786 0.94724 0.96440 0.99400 1.21079 0.93713 0.98563 1.04867 1.21094 1.01315 0.90318 0.93492 1.20430 0.89936 0.98335 1.03329 1.19241 0.86995 0.91496 0.92502 0.91334 1.21494 0.93474 0.87442 0.97583 1.46011 1.47880 1.30921 1.11636 1.20616 0.82062 0.84352 0.83287 1.90619 1.51175 1.68440 1.33109 1.21716 1.00434 0.96300 0.99132 1.20432 0.94724 0.95613 0.95367 0.90450 1.21911 0.96962 1.01344 1.00353 1.22402 0.90153 0.99985 1.04036 1.22992 1.03783 1.02946 0.92057 1.22975 0.97973 1.02906 0.98011 1.42476 1.04269 1.83744 1.05214 1.19150 0.94141 1.40824 0.83181 0.91197 1.24694 0.95957 1.02111 0.97382 1.69644 1.01592 1.53951 1.32490 0.86322 0.76959 0.77845 0.85362 1.21278 1.21747 1.21238 0.93124 0.88748 0.93099 0.86391 0.86798 0.86591 0.84057 0.91474 0.92090 0.75403 0.89127 0.88737 0.90438 0.93474 0.93171 0.87957 0.88843 0.89173 0.88940 0.88483 0.77869 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.87 9.68 -19.42 -0.19 -5.06 16 3 C 0.12 2.05 6.66 -39.22 -0.26 1.79 16 4 C -0.22 -3.26 9.04 -39.43 -0.36 -3.62 16 5 C -0.10 -1.40 10.04 -39.60 -0.40 -1.80 16 6 C -0.16 -2.69 10.04 -39.56 -0.40 -3.08 16 7 C -0.04 -0.84 9.32 -39.61 -0.37 -1.20 16 8 C -0.12 -2.18 5.06 -104.47 -0.53 -2.71 16 9 C 0.21 4.03 2.32 -69.08 -0.16 3.87 16 10 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 11 C 0.12 2.23 5.21 -4.04 -0.02 2.21 16 12 N -0.71 -11.92 5.39 -60.30 -0.32 -12.25 16 13 C 0.51 8.29 7.55 -10.98 -0.08 8.21 16 14 O -0.55 -10.48 13.97 5.56 0.08 -10.40 16 15 C -0.14 -1.74 5.09 -27.88 -0.14 -1.88 16 16 C -0.04 -0.52 2.19 -90.62 -0.20 -0.71 16 17 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 18 C -0.15 -1.79 8.92 37.16 0.33 -1.46 16 19 C -0.15 -1.52 5.15 -90.62 -0.47 -1.99 16 20 C -0.18 -1.74 10.18 -26.73 -0.27 -2.02 16 21 C -0.18 -1.83 9.67 -26.73 -0.26 -2.09 16 22 N -0.72 -16.10 3.18 -54.55 -0.17 -16.27 16 23 C -0.24 -6.16 9.92 -15.06 -0.15 -6.30 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 27 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 31 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.14 2.98 7.14 -52.49 -0.37 2.60 16 38 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.41 6.86 8.14 -40.82 -0.33 6.53 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.18 7.12 -51.93 -0.37 0.81 16 43 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 47 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 51 H 0.39 9.36 7.80 -40.82 -0.32 9.04 16 52 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 422.19 15.07 6.36 6.36 Total: -1.00 -29.27 422.19 -10.02 -39.29 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -8.64 Total: 18.95 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.83 Total: -11.71 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.23 Total: -53.80 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.11 Total: -15.46 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -29.27 -10.02 -39.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.254 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds