Wall clock time and date at job start Sat Apr 11 2020 08:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 116.99558 * 2 1 4 4 C 1.38756 * 120.05623 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94172 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05533 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11312 * 359.74709 * 6 5 4 8 8 C 1.38164 * 120.05221 * 0.50439 * 7 6 5 9 9 C 1.50706 * 120.02635 * 179.77090 * 8 7 6 10 10 H 1.09000 * 109.46960 * 219.72784 * 9 8 7 11 11 C 1.52997 * 109.47290 * 99.72531 * 9 8 7 12 12 N 1.46497 * 109.46983 * 185.00167 * 11 9 8 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.47346 * 305.00026 * 16 15 13 18 18 C 1.53004 * 109.47236 * 64.99766 * 16 15 13 19 19 C 1.52997 * 109.47504 * 184.99949 * 16 15 13 20 20 C 1.52997 * 117.50274 * 128.62093 * 19 16 15 21 21 C 1.52999 * 60.00241 * 252.51028 * 20 19 16 22 22 N 1.46500 * 109.47019 * 339.72431 * 9 8 7 23 23 C 1.36939 * 120.00440 * 274.99998 * 22 9 8 24 24 H 1.08007 * 119.99440 * 0.02562 * 23 22 9 25 25 C 1.38805 * 120.00308 * 179.97438 * 23 22 9 26 26 N 1.31618 * 120.00179 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00108 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47001 * 60.00104 * 27 25 23 29 29 H 1.48501 * 109.47117 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46816 * 300.00357 * 27 25 23 31 31 H 1.09004 * 109.47494 * 60.00154 * 1 2 3 32 32 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47372 * 299.99953 * 1 2 3 34 34 H 1.07991 * 120.02839 * 359.95494 * 4 3 2 35 35 H 1.08001 * 119.97132 * 179.97438 * 5 4 3 36 36 H 1.08002 * 119.93918 * 179.97438 * 6 5 4 37 37 H 1.08000 * 119.97391 * 180.25769 * 7 6 5 38 38 H 1.09001 * 109.46832 * 64.99984 * 11 9 8 39 39 H 1.09002 * 109.47153 * 305.00175 * 11 9 8 40 40 H 0.96995 * 120.00423 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 43 43 H 1.09001 * 109.46917 * 300.00567 * 18 16 15 44 44 H 1.09004 * 109.46741 * 59.99889 * 18 16 15 45 45 H 1.09000 * 109.47403 * 180.02562 * 18 16 15 46 46 H 1.09004 * 115.54795 * 274.33275 * 19 16 15 47 47 H 1.09004 * 117.49960 * 0.02562 * 20 19 16 48 48 H 1.09000 * 117.49945 * 145.01956 * 20 19 16 49 49 H 1.08994 * 117.49974 * 252.50732 * 21 20 19 50 50 H 1.09002 * 117.51615 * 107.47832 * 21 20 19 51 51 H 0.97006 * 119.99969 * 94.99832 * 22 9 8 52 52 H 0.97000 * 120.00173 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5173 0.0069 8 6 3.4310 1.2850 0.0011 9 6 4.2537 0.0223 0.0017 10 1 3.7927 -0.7120 -0.6590 11 6 4.3217 -0.5415 1.4223 12 7 5.2178 -1.7002 1.4454 13 6 5.4322 -2.3634 2.5991 14 8 4.8836 -2.0006 3.6181 15 6 6.3544 -3.5550 2.6230 16 6 6.4223 -4.1189 4.0437 17 1 6.7154 -3.3285 4.7348 18 6 5.0488 -4.6620 4.4430 19 6 7.4523 -5.2491 4.0952 20 6 8.5236 -5.1796 5.1853 21 6 8.8971 -4.9056 3.7271 22 7 5.6079 0.3216 -0.4703 23 6 5.8767 0.3400 -1.8129 24 1 5.0902 0.1343 -2.5239 25 6 7.1597 0.6242 -2.2600 26 7 8.1181 0.8753 -1.3936 27 14 7.5262 0.6500 -4.0916 28 1 6.6808 1.6773 -4.7511 29 1 8.9592 0.9760 -4.3051 30 1 7.2301 -0.6833 -4.6745 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2127 2.3203 0.0002 35 1 1.3338 4.5114 0.0011 36 1 3.7920 4.6382 0.0016 37 1 5.1343 2.5754 0.0115 38 1 3.3247 -0.8468 1.7401 39 1 4.7003 0.2242 2.0994 40 1 5.6563 -1.9906 0.6304 41 1 5.9765 -4.3206 1.9455 42 1 7.3515 -3.2492 2.3059 43 1 4.3151 -3.8568 4.4063 44 1 4.7557 -5.4523 3.7520 45 1 5.0970 -5.0633 5.4553 46 1 7.0824 -6.2353 3.8147 47 1 8.4944 -4.3288 5.8661 48 1 8.8586 -6.1202 5.6224 49 1 9.4778 -5.6659 3.2050 50 1 9.1138 -3.8744 3.4480 51 1 6.3143 0.5067 0.1683 52 1 9.0148 1.0735 -1.7060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198994368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:07 Heat of formation + Delta-G solvation = -38.642495 kcal Electronic energy + Delta-G solvation = -30817.352832 eV Core-core repulsion = 26782.256299 eV Total energy + Delta-G solvation = -4035.096533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.26878 -40.78324 -38.82418 -38.39645 -37.27903 -35.19233 -34.04000 -33.64771 -31.33361 -30.95698 -29.84468 -28.21737 -27.83689 -25.63007 -24.62079 -23.83108 -23.13793 -22.80831 -21.57599 -21.36002 -20.49351 -19.32459 -18.85091 -17.94339 -17.30565 -17.18721 -16.75863 -16.54507 -16.28239 -16.26568 -16.08350 -15.69788 -15.35275 -15.16011 -14.95040 -14.67956 -14.46980 -14.13814 -14.07070 -13.89991 -13.71943 -13.46403 -13.01052 -12.82004 -12.78474 -12.70883 -12.49826 -12.40485 -12.27585 -12.20851 -12.08291 -12.07072 -11.91609 -11.84151 -11.74100 -11.58428 -11.08699 -10.99442 -10.85283 -10.61024 -9.96391 -9.66376 -9.07507 -8.95564 -7.90189 -5.20061 0.51690 0.60596 1.50295 1.51322 1.57063 1.73332 2.32303 2.49887 2.57937 2.93087 2.96744 3.43026 3.69071 3.77990 3.87053 3.98833 4.01639 4.09699 4.13398 4.17914 4.24672 4.32107 4.37094 4.40143 4.42405 4.45707 4.55668 4.59396 4.64337 4.65541 4.76574 4.77151 4.82065 4.84888 4.91754 4.94255 5.04708 5.06826 5.19175 5.22115 5.23523 5.31199 5.43065 5.45157 5.48010 5.55611 5.62258 5.63580 5.84026 6.02473 6.29555 6.58410 6.66593 7.33435 7.37934 8.04297 8.33594 9.31415 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007637 B = 0.003502 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.383412 B = 7992.657946 C =10667.519156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.173 4.173 7 C -0.068 4.068 8 C -0.144 4.144 9 C 0.219 3.781 10 H 0.059 0.941 11 C 0.140 3.860 12 N -0.713 5.713 13 C 0.507 3.493 14 O -0.582 6.582 15 C -0.129 4.129 16 C -0.039 4.039 17 H 0.055 0.945 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.177 4.177 21 C -0.186 4.186 22 N -0.717 5.717 23 C -0.231 4.231 24 H 0.068 0.932 25 C -0.057 4.057 26 N -0.961 5.961 27 Si 0.961 3.039 28 H -0.286 1.286 29 H -0.298 1.298 30 H -0.278 1.278 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.410 0.590 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.084 0.916 51 H 0.376 0.624 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 -7.492 7.548 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.191 4.191 7 C -0.086 4.086 8 C -0.148 4.148 9 C 0.110 3.890 10 H 0.077 0.923 11 C 0.015 3.985 12 N -0.364 5.364 13 C 0.296 3.704 14 O -0.463 6.463 15 C -0.168 4.168 16 C -0.058 4.058 17 H 0.073 0.927 18 C -0.201 4.201 19 C -0.165 4.165 20 C -0.214 4.214 21 C -0.223 4.223 22 N -0.357 5.357 23 C -0.363 4.363 24 H 0.086 0.914 25 C -0.250 4.250 26 N -0.611 5.611 27 Si 0.791 3.209 28 H -0.213 1.213 29 H -0.224 1.224 30 H -0.204 1.204 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.247 0.753 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.136 0.864 47 H 0.105 0.895 48 H 0.126 0.874 49 H 0.124 0.876 50 H 0.102 0.898 51 H 0.209 0.791 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.987 -7.460 8.061 15.535 hybrid contribution 0.865 0.625 -1.269 1.658 sum -10.121 -6.835 6.792 13.975 Atomic orbital electron populations 1.23307 0.76811 1.05244 1.02140 1.86061 1.23159 1.26744 1.88725 1.18998 0.91409 0.85195 0.97310 1.21451 1.00881 0.91753 1.09144 1.21213 0.94031 0.97985 0.97125 1.21286 0.94834 0.98175 1.04781 1.20920 1.00006 0.91827 0.95854 1.20266 0.91267 0.97486 1.05761 1.19169 0.85353 0.91873 0.92637 0.92285 1.21246 0.93604 0.87349 0.96328 1.46037 1.47762 1.30631 1.12007 1.21260 0.81906 0.84847 0.82433 1.90608 1.52383 1.69377 1.33952 1.21748 0.99590 0.95158 1.00326 1.20371 0.95542 0.95753 0.94181 0.92675 1.21842 0.96018 1.00763 1.01471 1.22342 0.89644 0.99714 1.04794 1.23065 1.03052 1.03549 0.91771 1.23011 0.97981 1.02647 0.98615 1.42441 1.05374 1.83788 1.04080 1.19341 0.93820 1.38791 0.84314 0.91439 1.25295 0.96042 1.03090 1.00607 1.69783 1.01545 1.55926 1.33827 0.85417 0.76104 0.77909 0.81504 1.21293 1.22441 1.20407 0.91812 0.86744 0.91641 0.82920 0.82973 0.85102 0.87377 0.91305 0.93922 0.75340 0.86949 0.88369 0.93191 0.91899 0.92179 0.86374 0.89523 0.87407 0.87607 0.89754 0.79114 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.92 9.68 -92.42 -0.90 -10.81 16 3 C 0.12 3.82 6.66 22.51 0.15 3.97 16 4 C -0.21 -5.74 9.04 22.37 0.20 -5.54 16 5 C -0.09 -2.27 10.04 22.26 0.22 -2.05 16 6 C -0.17 -5.54 10.04 22.28 0.22 -5.31 16 7 C -0.07 -2.66 9.32 22.25 0.21 -2.45 16 8 C -0.14 -5.53 5.06 -19.77 -0.10 -5.63 16 9 C 0.22 8.79 2.32 44.25 0.10 8.89 16 10 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 11 C 0.14 5.23 5.21 86.38 0.45 5.68 16 12 N -0.71 -24.70 5.39 -463.06 -2.49 -27.20 16 13 C 0.51 16.90 7.55 87.66 0.66 17.57 16 14 O -0.58 -22.79 13.97 -3.03 -0.04 -22.83 16 15 C -0.13 -3.26 5.09 29.85 0.15 -3.11 16 16 C -0.04 -0.94 2.19 -10.79 -0.02 -0.97 16 17 H 0.05 1.56 7.71 -2.39 -0.02 1.54 16 18 C -0.14 -3.37 8.92 71.98 0.64 -2.72 16 19 C -0.15 -2.79 5.15 -10.79 -0.06 -2.85 16 20 C -0.18 -3.17 10.18 30.59 0.31 -2.86 16 21 C -0.19 -3.52 9.67 30.60 0.30 -3.22 16 22 N -0.72 -33.67 3.18 -326.49 -1.04 -34.71 16 23 C -0.23 -12.04 9.92 84.03 0.83 -11.21 16 24 H 0.07 3.51 7.83 -2.91 -0.02 3.48 16 25 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 26 N -0.96 -55.49 13.06 21.65 0.28 -55.21 16 27 Si 0.96 44.60 29.55 68.60 2.03 46.63 16 28 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 30 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 31 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 34 H 0.15 2.99 6.30 -2.91 -0.02 2.98 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.11 4.90 7.14 -2.91 -0.02 4.88 16 38 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 14.17 8.14 -92.71 -0.75 13.42 16 41 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.10 2.45 7.12 -2.39 -0.02 2.43 16 43 H 0.05 1.46 5.95 -2.39 -0.01 1.44 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.12 1.92 8.11 -2.39 -0.02 1.90 16 47 H 0.09 1.66 8.05 -2.38 -0.02 1.64 16 48 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 51 H 0.38 19.25 7.80 -92.70 -0.72 18.52 16 52 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -65.32 422.19 3.14 -62.18 By element: Atomic # 1 Polarization: 55.48 SS G_CDS: -0.55 Total: 54.92 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.86 Total: -12.97 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.25 Total: -117.12 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.94 Total: -33.64 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.32 3.14 -62.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.535 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds