Wall clock time and date at job start Sat Apr 11 2020 08:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 117.00223 * 2 1 4 4 C 1.38750 * 120.05263 * 0.24884 * 3 2 1 5 5 C 1.38127 * 119.93907 * 180.27529 * 4 3 2 6 6 C 1.38284 * 120.05799 * 359.72369 * 5 4 3 7 7 C 1.38250 * 120.11232 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05090 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02446 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47166 * 144.99943 * 9 8 7 11 11 C 1.53000 * 109.46912 * 264.99773 * 9 8 7 12 12 N 1.46501 * 109.46815 * 174.99936 * 11 9 8 13 13 C 1.34770 * 120.00083 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00513 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47613 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.47069 * 305.00091 * 16 15 13 18 18 C 1.52997 * 109.47314 * 65.00080 * 16 15 13 19 19 C 1.53003 * 109.47408 * 185.00386 * 16 15 13 20 20 C 1.53000 * 117.49792 * 59.99743 * 19 16 15 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 16 22 22 N 1.46503 * 109.47037 * 24.99836 * 9 8 7 23 23 C 1.36936 * 119.99928 * 85.00325 * 22 9 8 24 24 H 1.07999 * 120.00137 * 359.97438 * 23 22 9 25 25 C 1.38812 * 119.99970 * 180.02562 * 23 22 9 26 26 N 1.31615 * 120.00028 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99975 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46929 * 90.00081 * 27 25 23 29 29 H 1.48494 * 109.47154 * 210.00307 * 27 25 23 30 30 H 1.48506 * 109.47012 * 330.00306 * 27 25 23 31 31 H 1.08997 * 109.47842 * 300.00751 * 1 2 3 32 32 H 1.09010 * 109.46703 * 60.00340 * 1 2 3 33 33 H 1.09002 * 109.47403 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.03003 * 0.02562 * 4 3 2 35 35 H 1.08004 * 119.97342 * 179.74161 * 5 4 3 36 36 H 1.07997 * 119.94606 * 180.02562 * 6 5 4 37 37 H 1.07995 * 119.97357 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47158 * 55.00088 * 11 9 8 39 39 H 1.08998 * 109.46880 * 294.99737 * 11 9 8 40 40 H 0.97002 * 120.00445 * 0.02562 * 12 11 9 41 41 H 1.09001 * 109.46842 * 60.00406 * 15 13 12 42 42 H 1.09001 * 109.47387 * 300.00828 * 15 13 12 43 43 H 1.09005 * 109.47044 * 59.99995 * 18 16 15 44 44 H 1.08993 * 109.47346 * 180.02562 * 18 16 15 45 45 H 1.09008 * 109.47014 * 300.00313 * 18 16 15 46 46 H 1.08999 * 115.55832 * 274.31360 * 19 16 15 47 47 H 1.09002 * 117.49833 * 214.98161 * 20 19 16 48 48 H 1.09002 * 117.49953 * 359.97438 * 20 19 16 49 49 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 50 50 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 51 51 H 0.96998 * 120.00083 * 264.99838 * 22 9 8 52 52 H 0.96993 * 120.00288 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9210 3.6047 -0.0005 6 6 3.3020 3.6757 -0.0057 7 6 4.0561 2.5170 -0.0057 8 6 3.4311 1.2848 0.0001 9 6 4.2537 0.0220 0.0007 10 1 3.7489 -0.7402 0.5941 11 6 4.4215 -0.4780 -1.4356 12 7 5.3188 -1.6360 -1.4477 13 6 5.6142 -2.2474 -2.6119 14 8 5.1375 -1.8386 -3.6496 15 6 6.5376 -3.4382 -2.6246 16 6 6.7053 -3.9384 -4.0607 17 1 5.7250 -4.1440 -4.4907 18 6 7.4134 -2.8683 -4.8940 19 6 7.5409 -5.2201 -4.0602 20 6 6.9984 -6.4167 -3.2761 21 6 6.9766 -6.4319 -4.8059 22 7 5.5713 0.2978 0.5788 23 6 5.7456 0.2559 1.9364 24 1 4.9118 0.0200 2.5809 25 6 6.9939 0.5178 2.4843 26 7 7.1614 0.4780 3.7891 27 14 8.4360 0.9266 1.3696 28 1 8.4965 2.3951 1.1570 29 1 9.6975 0.4657 2.0031 30 1 8.2603 0.2440 0.0624 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 0.2129 2.3204 0.0097 35 1 1.3341 4.5114 -0.0007 36 1 3.7923 4.6380 -0.0098 37 1 5.1345 2.5751 -0.0093 38 1 4.8454 0.3166 -2.0497 39 1 3.4496 -0.7672 -1.8354 40 1 5.6998 -1.9632 -0.6178 41 1 6.1144 -4.2327 -2.0099 42 1 7.5096 -3.1486 -2.2252 43 1 8.3938 -2.6627 -4.4641 44 1 7.5325 -3.2244 -5.9172 45 1 6.8181 -1.9552 -4.8944 46 1 8.6214 -5.0771 -4.0765 47 1 7.7220 -7.0610 -2.7766 48 1 6.0465 -6.2907 -2.7603 49 1 7.6857 -7.0863 -5.3129 50 1 6.0103 -6.3156 -5.2966 51 1 6.3202 0.5101 0.0000 52 1 8.0335 0.6613 4.1720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198994369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:15 Heat of formation + Delta-G solvation = -36.601409 kcal Electronic energy + Delta-G solvation = -30895.385602 eV Core-core repulsion = 26860.377577 eV Total energy + Delta-G solvation = -4035.008025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.30855 -40.81630 -38.86895 -38.43700 -37.38296 -35.24411 -34.05996 -33.76569 -31.83778 -30.98465 -29.96492 -28.32787 -27.87078 -25.44850 -24.54571 -23.88071 -23.13937 -22.84005 -21.62914 -21.41091 -20.54747 -19.82929 -18.87837 -17.96774 -17.37761 -17.23259 -16.70849 -16.61489 -16.47631 -16.18355 -16.13751 -15.77034 -15.30176 -15.20911 -14.91461 -14.65397 -14.59422 -14.33646 -14.14811 -14.01871 -13.81360 -13.55844 -13.14911 -12.95422 -12.85251 -12.75172 -12.49886 -12.40292 -12.36346 -12.23333 -12.11664 -11.99334 -11.91559 -11.81307 -11.75186 -11.70117 -11.10710 -11.04761 -10.86403 -10.63821 -10.02181 -9.71658 -9.37707 -8.99520 -7.98787 -5.34498 0.48712 0.58719 1.39464 1.41378 1.48490 1.69576 2.26921 2.48173 2.49187 2.90606 2.95551 3.32839 3.45523 3.67525 3.85186 3.93349 3.99602 4.04729 4.08875 4.14206 4.21703 4.26768 4.34090 4.37002 4.38877 4.44265 4.54070 4.56289 4.60610 4.63623 4.74368 4.74957 4.76329 4.84553 4.87404 4.90795 5.00021 5.05016 5.16841 5.18364 5.21559 5.31369 5.39262 5.43293 5.45607 5.56600 5.59720 5.74663 5.82443 5.98393 6.23393 6.56042 6.61461 7.07523 7.29139 7.79028 8.01219 9.22598 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.003508 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.377561 B = 7980.564684 C =10088.682110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.171 4.171 7 C -0.071 4.071 8 C -0.143 4.143 9 C 0.223 3.777 10 H 0.061 0.939 11 C 0.136 3.864 12 N -0.719 5.719 13 C 0.508 3.492 14 O -0.578 6.578 15 C -0.132 4.132 16 C -0.037 4.037 17 H 0.063 0.937 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.180 4.180 21 C -0.177 4.177 22 N -0.735 5.735 23 C -0.218 4.218 24 H 0.054 0.946 25 C -0.049 4.049 26 N -0.980 5.980 27 Si 0.943 3.057 28 H -0.284 1.284 29 H -0.298 1.298 30 H -0.250 1.250 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.366 0.634 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -6.093 -15.069 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.070 3.930 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.189 4.189 7 C -0.089 4.089 8 C -0.147 4.147 9 C 0.114 3.886 10 H 0.079 0.921 11 C 0.011 3.989 12 N -0.370 5.370 13 C 0.296 3.704 14 O -0.459 6.459 15 C -0.171 4.171 16 C -0.056 4.056 17 H 0.081 0.919 18 C -0.204 4.204 19 C -0.171 4.171 20 C -0.217 4.217 21 C -0.214 4.214 22 N -0.378 5.378 23 C -0.348 4.348 24 H 0.072 0.928 25 C -0.241 4.241 26 N -0.631 5.631 27 Si 0.771 3.229 28 H -0.211 1.211 29 H -0.225 1.225 30 H -0.174 1.174 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.247 0.753 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.111 0.889 49 H 0.122 0.878 50 H 0.109 0.891 51 H 0.200 0.800 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.051 -6.049 -15.571 18.543 hybrid contribution 1.012 0.565 0.518 1.269 sum -7.039 -5.484 -15.053 17.499 Atomic orbital electron populations 1.23305 0.76784 1.05257 1.02133 1.86056 1.23200 1.26827 1.88720 1.19010 0.91527 0.85191 0.97255 1.21462 1.00915 0.91832 1.08994 1.21229 0.94230 0.97914 0.96995 1.21307 0.94787 0.98321 1.04467 1.20888 1.00009 0.91740 0.96292 1.20159 0.91283 0.97324 1.05904 1.19137 0.85098 0.92396 0.91949 0.92085 1.21318 0.93963 0.87776 0.95827 1.46093 1.48883 1.31645 1.10397 1.21252 0.81524 0.84940 0.82665 1.90623 1.55043 1.67340 1.32871 1.21789 0.99875 0.95369 1.00110 1.20355 0.98498 0.93632 0.93137 0.91892 1.21866 0.99932 0.98772 0.99859 1.22337 0.99562 0.88873 1.06332 1.23030 1.03242 1.01111 0.94337 1.23075 1.02833 1.00711 0.94799 1.42665 1.06740 1.85116 1.03309 1.18826 0.95066 1.38399 0.82558 0.92790 1.25289 0.99894 1.02485 0.96442 1.69860 1.23805 1.57984 1.11413 0.85607 0.79609 0.78227 0.79486 1.21109 1.22491 1.17401 0.92038 0.91407 0.86755 0.83026 0.82970 0.84684 0.86953 0.92733 0.91102 0.75274 0.87196 0.87775 0.92559 0.92138 0.93186 0.87110 0.87818 0.88894 0.87786 0.89136 0.79990 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.01 9.64 -92.50 -0.89 -10.91 16 3 C 0.12 3.76 6.66 22.50 0.15 3.91 16 4 C -0.21 -5.69 9.04 22.37 0.20 -5.48 16 5 C -0.09 -2.21 10.04 22.25 0.22 -1.99 16 6 C -0.17 -5.17 10.04 22.28 0.22 -4.94 16 7 C -0.07 -2.59 9.32 22.26 0.21 -2.39 16 8 C -0.14 -5.29 5.04 -19.77 -0.10 -5.39 16 9 C 0.22 8.52 2.37 44.25 0.11 8.62 16 10 H 0.06 2.52 7.64 -2.39 -0.02 2.50 16 11 C 0.14 4.64 5.22 86.38 0.45 5.09 16 12 N -0.72 -22.53 5.39 -463.06 -2.49 -25.02 16 13 C 0.51 15.34 7.55 87.66 0.66 16.00 16 14 O -0.58 -20.81 13.97 -3.07 -0.04 -20.86 16 15 C -0.13 -2.99 5.09 29.85 0.15 -2.83 16 16 C -0.04 -0.81 2.19 -10.79 -0.02 -0.83 16 17 H 0.06 1.54 7.71 -2.38 -0.02 1.53 16 18 C -0.15 -3.41 8.92 71.98 0.64 -2.77 16 19 C -0.15 -2.64 5.15 -10.77 -0.06 -2.69 16 20 C -0.18 -2.80 9.67 30.60 0.30 -2.51 16 21 C -0.18 -2.73 10.18 30.62 0.31 -2.42 16 22 N -0.74 -32.03 3.10 -326.48 -1.01 -33.04 16 23 C -0.22 -11.69 10.40 84.03 0.87 -10.81 16 24 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 25 C -0.05 -2.76 5.50 84.86 0.47 -2.30 16 26 N -0.98 -60.79 13.97 21.65 0.30 -60.49 16 27 Si 0.94 43.56 27.74 68.60 1.90 45.47 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 31 H 0.06 1.06 7.65 -2.39 -0.02 1.04 16 32 H 0.07 1.07 7.67 -2.38 -0.02 1.05 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.11 4.41 7.26 -2.91 -0.02 4.39 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.41 12.72 8.14 -92.71 -0.75 11.96 16 41 H 0.11 2.12 7.12 -2.39 -0.02 2.10 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.44 5.95 -2.38 -0.01 1.43 16 46 H 0.11 1.78 8.11 -2.39 -0.02 1.76 16 47 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 49 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 51 H 0.37 15.58 5.66 -92.71 -0.52 15.05 16 52 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.87 419.19 3.25 -66.62 By element: Atomic # 1 Polarization: 50.89 SS G_CDS: -0.41 Total: 50.48 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.90 Total: -12.25 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -3.20 Total: -118.55 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.93 Total: -31.76 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.47 kcal Total: -69.87 3.25 -66.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.018 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds