Wall clock time and date at job start Sat Apr 11 2020 08:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 116.99904 * 2 1 4 4 C 1.38757 * 120.05432 * 0.25181 * 3 2 1 5 5 C 1.38123 * 119.93800 * 180.27395 * 4 3 2 6 6 C 1.38281 * 120.06246 * 359.72800 * 5 4 3 7 7 C 1.38250 * 120.10626 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05681 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02350 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46891 * 145.00285 * 9 8 7 11 11 C 1.52999 * 109.47270 * 264.99672 * 9 8 7 12 12 N 1.46501 * 109.47135 * 175.00337 * 11 9 8 13 13 C 1.34783 * 119.99675 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00464 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99677 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47137 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46716 * 55.00487 * 16 15 13 18 18 C 1.52997 * 109.47317 * 295.00578 * 16 15 13 19 19 C 1.52992 * 109.46961 * 175.00116 * 16 15 13 20 20 C 1.53002 * 117.50202 * 248.62259 * 19 16 15 21 21 C 1.52995 * 60.00289 * 252.51516 * 20 19 16 22 22 N 1.46495 * 109.47397 * 25.00175 * 9 8 7 23 23 C 1.36942 * 120.00152 * 84.99918 * 22 9 8 24 24 H 1.08003 * 119.99478 * 0.02562 * 23 22 9 25 25 C 1.38806 * 120.00006 * 179.97438 * 23 22 9 26 26 N 1.31611 * 120.00503 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99699 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47361 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47339 * 119.99898 * 27 25 23 30 30 H 1.48502 * 109.47039 * 239.99859 * 27 25 23 31 31 H 1.08998 * 109.47012 * 299.99559 * 1 2 3 32 32 H 1.08997 * 109.47072 * 60.00140 * 1 2 3 33 33 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.03165 * 0.02633 * 4 3 2 35 35 H 1.08008 * 119.96708 * 179.75280 * 5 4 3 36 36 H 1.08002 * 119.95149 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.96958 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.46669 * 55.00376 * 11 9 8 39 39 H 1.08999 * 109.47516 * 295.00442 * 11 9 8 40 40 H 0.96997 * 120.00359 * 359.97438 * 12 11 9 41 41 H 1.09006 * 109.46831 * 59.99764 * 15 13 12 42 42 H 1.08997 * 109.47469 * 300.00682 * 15 13 12 43 43 H 1.09002 * 109.47153 * 299.99641 * 18 16 15 44 44 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 45 45 H 1.09004 * 109.47261 * 59.99813 * 18 16 15 46 46 H 1.08997 * 115.55368 * 34.33858 * 19 16 15 47 47 H 1.09000 * 117.49728 * 0.02562 * 20 19 16 48 48 H 1.08999 * 117.50138 * 145.02181 * 20 19 16 49 49 H 1.09003 * 117.49858 * 252.51133 * 21 20 19 50 50 H 1.09003 * 117.50068 * 107.49036 * 21 20 19 51 51 H 0.97001 * 120.00351 * 264.99898 * 22 9 8 52 52 H 0.96994 * 120.00511 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0005 6 6 3.3018 3.6758 -0.0058 7 6 4.0559 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0222 -0.0009 10 1 3.7494 -0.7404 0.5926 11 6 4.4203 -0.4772 -1.4374 12 7 5.3176 -1.6352 -1.4509 13 6 5.6128 -2.2454 -2.6159 14 8 5.1360 -1.8357 -3.6530 15 6 6.5363 -3.4363 -2.6299 16 6 6.7028 -3.9357 -4.0664 17 1 7.0417 -3.1155 -4.6992 18 6 5.3609 -4.4580 -4.5836 19 6 7.7354 -5.0641 -4.0975 20 6 9.0707 -4.7810 -4.7888 21 6 8.0451 -5.7012 -5.4538 22 7 5.5717 0.2977 0.5763 23 6 5.7473 0.2552 1.9337 24 1 4.9141 0.0181 2.5787 25 6 6.9962 0.5157 2.4805 26 7 8.0119 0.8032 1.6944 27 14 7.2354 0.4584 4.3323 28 1 5.9476 0.1156 4.9874 29 1 8.2517 -0.5708 4.6686 30 1 7.6969 1.7855 4.8131 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2128 2.3203 0.0098 35 1 1.3339 4.5113 -0.0004 36 1 3.7922 4.6381 -0.0098 37 1 5.1343 2.5752 -0.0096 38 1 4.8436 0.3177 -2.0516 39 1 3.4481 -0.7662 -1.8367 40 1 5.6999 -1.9623 -0.6217 41 1 6.1132 -4.2313 -2.0158 42 1 7.5083 -3.1470 -2.2304 43 1 5.0219 -5.2782 -3.9508 44 1 5.4795 -4.8134 -5.6072 45 1 4.6251 -3.6540 -4.5614 46 1 7.7493 -5.7130 -3.2219 47 1 9.2136 -3.7906 -5.2210 48 1 9.9634 -5.2434 -4.3677 49 1 8.2631 -6.7690 -5.4702 50 1 7.5131 -5.3163 -6.3238 51 1 6.3201 0.5103 -0.0030 52 1 8.8847 0.9849 2.0765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198994370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:32 Heat of formation + Delta-G solvation = -23.449682 kcal Electronic energy + Delta-G solvation = -30707.586178 eV Core-core repulsion = 26673.148455 eV Total energy + Delta-G solvation = -4034.437724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.98410 -39.51882 -37.84514 -37.17973 -35.81152 -33.53033 -33.03351 -32.00726 -29.73749 -29.69446 -28.46309 -27.13830 -26.62767 -24.08043 -23.38354 -22.56987 -22.32833 -21.57205 -20.09733 -20.01604 -19.56095 -17.70666 -17.39272 -16.60278 -16.04490 -15.88059 -15.59393 -15.41055 -15.18995 -14.91918 -14.58406 -14.44997 -13.97834 -13.82994 -13.46871 -13.33826 -13.17247 -13.01860 -12.78288 -12.70391 -12.40238 -12.19837 -11.85366 -11.72594 -11.63657 -11.28745 -11.18547 -11.08058 -10.98154 -10.87924 -10.80399 -10.71920 -10.68884 -10.48882 -10.33018 -10.10282 -9.93279 -9.76954 -9.36066 -9.05825 -8.52336 -8.33504 -7.72977 -7.11557 -5.85525 -3.16635 1.80951 1.88893 3.06081 3.38124 3.45942 3.46843 3.56855 3.61373 3.77792 4.24181 4.51704 4.62299 4.79435 4.87431 4.99796 5.05931 5.16207 5.23275 5.25799 5.27680 5.36852 5.47209 5.49121 5.51257 5.54755 5.55177 5.58887 5.65064 5.73069 5.74309 5.83714 5.86738 5.90830 5.97811 5.98816 6.00632 6.05020 6.20628 6.26589 6.34813 6.43927 6.45125 6.51479 6.60846 6.74190 6.92316 6.96684 7.17460 7.33521 7.67407 7.75748 8.03549 8.31315 8.68452 9.44291 9.94878 10.32285 11.35924 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007800 B = 0.003329 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.804979 B = 8410.039928 C =10939.413216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.045 4.045 8 C -0.114 4.114 9 C 0.208 3.792 10 H 0.070 0.930 11 C 0.125 3.875 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.554 6.554 15 C -0.135 4.135 16 C -0.042 4.042 17 H 0.077 0.923 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.182 4.182 21 C -0.180 4.180 22 N -0.716 5.716 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.903 3.097 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.387 0.613 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -6.464 -9.015 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.237 4.237 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.063 4.063 8 C -0.119 4.119 9 C 0.097 3.903 10 H 0.087 0.913 11 C 0.000 4.000 12 N -0.365 5.365 13 C 0.297 3.703 14 O -0.433 6.433 15 C -0.175 4.175 16 C -0.061 4.061 17 H 0.095 0.905 18 C -0.206 4.206 19 C -0.165 4.165 20 C -0.218 4.218 21 C -0.217 4.217 22 N -0.357 5.357 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.202 4.202 26 N -0.576 5.576 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.246 0.754 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.111 0.889 51 H 0.221 0.779 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.603 -6.395 -9.539 14.349 hybrid contribution 0.339 0.300 1.511 1.577 sum -8.264 -6.095 -8.028 13.034 Atomic orbital electron populations 1.22958 0.79417 1.03325 1.00854 1.86086 1.20445 1.27191 1.88935 1.18943 0.91976 0.83802 0.97650 1.21052 0.99202 0.92628 1.10864 1.20780 0.94711 0.96448 0.99401 1.21066 0.93730 0.98521 1.04856 1.21034 1.01096 0.90413 0.93744 1.20421 0.89981 0.98284 1.03182 1.19250 0.87570 0.91845 0.91632 0.91260 1.21499 0.93375 0.87661 0.97464 1.46009 1.48751 1.31746 1.09948 1.20589 0.81630 0.84502 0.83529 1.90620 1.54157 1.66335 1.32201 1.21697 1.00385 0.96593 0.98854 1.20429 0.94761 0.95800 0.95145 0.90458 1.21916 0.97246 1.01365 1.00066 1.22373 0.96982 1.00847 0.96308 1.23027 0.93227 1.01082 1.04515 1.22911 1.03709 0.98541 0.96569 1.42490 1.04852 1.83453 1.04894 1.19241 0.94617 1.40303 0.82927 0.91092 1.24695 0.95857 1.02145 0.97535 1.69657 1.00631 1.53931 1.33427 0.86178 0.77547 0.77197 0.85615 1.20574 1.21878 1.21899 0.93105 0.93109 0.88740 0.86376 0.86779 0.86580 0.84356 0.92035 0.91583 0.75385 0.89140 0.88634 0.93447 0.93224 0.90534 0.87846 0.88754 0.89015 0.89136 0.88859 0.77888 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.89 9.64 -19.41 -0.19 -5.07 16 3 C 0.12 2.06 6.66 -39.22 -0.26 1.80 16 4 C -0.22 -3.25 9.04 -39.43 -0.36 -3.61 16 5 C -0.10 -1.40 10.04 -39.61 -0.40 -1.79 16 6 C -0.16 -2.66 10.04 -39.56 -0.40 -3.06 16 7 C -0.04 -0.84 9.32 -39.60 -0.37 -1.21 16 8 C -0.11 -2.15 5.04 -104.48 -0.53 -2.67 16 9 C 0.21 4.01 2.37 -69.09 -0.16 3.84 16 10 H 0.07 1.40 7.64 -51.93 -0.40 1.01 16 11 C 0.12 2.22 5.22 -4.04 -0.02 2.20 16 12 N -0.71 -11.87 5.39 -60.29 -0.32 -12.19 16 13 C 0.51 8.26 7.55 -10.98 -0.08 8.18 16 14 O -0.55 -10.44 13.97 5.56 0.08 -10.36 16 15 C -0.14 -1.72 5.16 -27.88 -0.14 -1.86 16 16 C -0.04 -0.51 2.19 -90.63 -0.20 -0.71 16 17 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 18 C -0.15 -1.80 8.77 37.16 0.33 -1.47 16 19 C -0.15 -1.51 5.15 -90.62 -0.47 -1.98 16 20 C -0.18 -1.78 10.18 -26.73 -0.27 -2.05 16 21 C -0.18 -1.67 9.73 -26.73 -0.26 -1.93 16 22 N -0.72 -16.12 3.30 -54.55 -0.18 -16.30 16 23 C -0.24 -6.12 9.92 -15.06 -0.15 -6.27 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 25 C -0.01 -0.16 5.50 -17.44 -0.10 -0.25 16 26 N -0.93 -26.08 13.06 55.49 0.72 -25.36 16 27 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 32 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 35 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.14 2.86 7.26 -52.49 -0.38 2.48 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.41 6.83 8.14 -40.82 -0.33 6.49 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.54 7.29 -51.93 -0.38 0.17 16 45 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 46 H 0.10 1.00 8.11 -51.93 -0.42 0.57 16 47 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.87 7.61 -51.93 -0.40 0.47 16 51 H 0.39 9.36 7.80 -40.82 -0.32 9.04 16 52 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 422.48 15.07 6.37 6.37 Total: -1.00 -29.54 422.48 -10.04 -39.58 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -8.65 Total: 18.43 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.84 Total: -11.54 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.22 Total: -53.84 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.11 Total: -15.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -29.54 -10.04 -39.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.134 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds