Wall clock time and date at job start Sat Apr 11 2020 08:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 116.99904 * 2 1 4 4 C 1.38757 * 120.05432 * 0.25181 * 3 2 1 5 5 C 1.38123 * 119.93800 * 180.27395 * 4 3 2 6 6 C 1.38281 * 120.06246 * 359.72800 * 5 4 3 7 7 C 1.38250 * 120.10626 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05681 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02350 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46891 * 145.00285 * 9 8 7 11 11 C 1.52999 * 109.47270 * 264.99672 * 9 8 7 12 12 N 1.46501 * 109.47135 * 175.00337 * 11 9 8 13 13 C 1.34783 * 119.99675 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00464 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99677 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47137 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46716 * 55.00487 * 16 15 13 18 18 C 1.52997 * 109.47317 * 295.00578 * 16 15 13 19 19 C 1.52992 * 109.46961 * 175.00116 * 16 15 13 20 20 C 1.53002 * 117.50202 * 248.62259 * 19 16 15 21 21 C 1.52995 * 60.00289 * 252.51516 * 20 19 16 22 22 N 1.46495 * 109.47397 * 25.00175 * 9 8 7 23 23 C 1.36942 * 120.00152 * 84.99918 * 22 9 8 24 24 H 1.08003 * 119.99478 * 0.02562 * 23 22 9 25 25 C 1.38806 * 120.00006 * 179.97438 * 23 22 9 26 26 N 1.31611 * 120.00503 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99699 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47361 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47339 * 119.99898 * 27 25 23 30 30 H 1.48502 * 109.47039 * 239.99859 * 27 25 23 31 31 H 1.08998 * 109.47012 * 299.99559 * 1 2 3 32 32 H 1.08997 * 109.47072 * 60.00140 * 1 2 3 33 33 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.03165 * 0.02633 * 4 3 2 35 35 H 1.08008 * 119.96708 * 179.75280 * 5 4 3 36 36 H 1.08002 * 119.95149 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.96958 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.46669 * 55.00376 * 11 9 8 39 39 H 1.08999 * 109.47516 * 295.00442 * 11 9 8 40 40 H 0.96997 * 120.00359 * 359.97438 * 12 11 9 41 41 H 1.09006 * 109.46831 * 59.99764 * 15 13 12 42 42 H 1.08997 * 109.47469 * 300.00682 * 15 13 12 43 43 H 1.09002 * 109.47153 * 299.99641 * 18 16 15 44 44 H 1.09001 * 109.46832 * 179.97438 * 18 16 15 45 45 H 1.09004 * 109.47261 * 59.99813 * 18 16 15 46 46 H 1.08997 * 115.55368 * 34.33858 * 19 16 15 47 47 H 1.09000 * 117.49728 * 0.02562 * 20 19 16 48 48 H 1.08999 * 117.50138 * 145.02181 * 20 19 16 49 49 H 1.09003 * 117.49858 * 252.51133 * 21 20 19 50 50 H 1.09003 * 117.50068 * 107.49036 * 21 20 19 51 51 H 0.97001 * 120.00351 * 264.99898 * 22 9 8 52 52 H 0.96994 * 120.00511 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0005 6 6 3.3018 3.6758 -0.0058 7 6 4.0559 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0222 -0.0009 10 1 3.7494 -0.7404 0.5926 11 6 4.4203 -0.4772 -1.4374 12 7 5.3176 -1.6352 -1.4509 13 6 5.6128 -2.2454 -2.6159 14 8 5.1360 -1.8357 -3.6530 15 6 6.5363 -3.4363 -2.6299 16 6 6.7028 -3.9357 -4.0664 17 1 7.0417 -3.1155 -4.6992 18 6 5.3609 -4.4580 -4.5836 19 6 7.7354 -5.0641 -4.0975 20 6 9.0707 -4.7810 -4.7888 21 6 8.0451 -5.7012 -5.4538 22 7 5.5717 0.2977 0.5763 23 6 5.7473 0.2552 1.9337 24 1 4.9141 0.0181 2.5787 25 6 6.9962 0.5157 2.4805 26 7 8.0119 0.8032 1.6944 27 14 7.2354 0.4584 4.3323 28 1 5.9476 0.1156 4.9874 29 1 8.2517 -0.5708 4.6686 30 1 7.6969 1.7855 4.8131 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2128 2.3203 0.0098 35 1 1.3339 4.5113 -0.0004 36 1 3.7922 4.6381 -0.0098 37 1 5.1343 2.5752 -0.0096 38 1 4.8436 0.3177 -2.0516 39 1 3.4481 -0.7662 -1.8367 40 1 5.6999 -1.9623 -0.6217 41 1 6.1132 -4.2313 -2.0158 42 1 7.5083 -3.1470 -2.2304 43 1 5.0219 -5.2782 -3.9508 44 1 5.4795 -4.8134 -5.6072 45 1 4.6251 -3.6540 -4.5614 46 1 7.7493 -5.7130 -3.2219 47 1 9.2136 -3.7906 -5.2210 48 1 9.9634 -5.2434 -4.3677 49 1 8.2631 -6.7690 -5.4702 50 1 7.5131 -5.3163 -6.3238 51 1 6.3201 0.5103 -0.0030 52 1 8.8847 0.9849 2.0765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198994370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:31 Heat of formation + Delta-G solvation = -39.316486 kcal Electronic energy + Delta-G solvation = -30708.274215 eV Core-core repulsion = 26673.148455 eV Total energy + Delta-G solvation = -4035.125760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.26180 -40.77037 -38.83353 -38.40376 -37.28247 -35.18703 -34.06771 -33.63828 -31.33766 -30.95424 -29.77371 -28.21168 -27.82918 -25.68143 -24.77130 -23.81989 -23.07785 -22.82104 -21.55882 -21.22330 -20.58706 -19.33335 -18.84667 -17.89783 -17.33954 -17.20799 -16.76500 -16.53911 -16.36585 -16.21222 -16.03551 -15.71602 -15.32592 -15.17623 -14.96875 -14.57033 -14.48410 -14.15610 -14.10308 -13.87950 -13.79627 -13.46927 -13.05443 -12.87910 -12.79850 -12.73215 -12.49833 -12.40457 -12.24302 -12.20914 -12.01982 -12.00882 -11.91660 -11.83899 -11.69474 -11.59407 -11.16858 -11.01885 -10.76276 -10.63639 -9.96502 -9.67062 -9.07751 -8.95202 -7.90632 -5.20248 0.51506 0.60536 1.48250 1.50852 1.58728 1.73691 2.33185 2.49943 2.57507 2.93618 2.96889 3.42905 3.70073 3.77611 3.80469 3.99160 4.05616 4.08871 4.12565 4.17825 4.27060 4.32353 4.37866 4.40681 4.43805 4.45805 4.55220 4.59336 4.63416 4.68020 4.76550 4.77066 4.81263 4.83668 4.92278 4.94915 5.03920 5.07488 5.08817 5.21945 5.28043 5.31717 5.43268 5.46148 5.49599 5.55461 5.61792 5.63431 5.83252 6.01757 6.29411 6.58408 6.66865 7.33702 7.37843 8.04211 8.33395 9.31416 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.007800 B = 0.003329 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.804979 B = 8410.039928 C =10939.413216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.172 4.172 7 C -0.068 4.068 8 C -0.143 4.143 9 C 0.219 3.781 10 H 0.060 0.940 11 C 0.139 3.861 12 N -0.713 5.713 13 C 0.508 3.492 14 O -0.582 6.582 15 C -0.128 4.128 16 C -0.039 4.039 17 H 0.054 0.946 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.187 4.187 21 C -0.172 4.172 22 N -0.717 5.717 23 C -0.228 4.228 24 H 0.068 0.932 25 C -0.058 4.058 26 N -0.961 5.961 27 Si 0.960 3.040 28 H -0.272 1.272 29 H -0.293 1.293 30 H -0.299 1.299 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.411 0.589 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.116 0.884 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.376 0.624 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -7.242 -8.673 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.190 4.190 7 C -0.086 4.086 8 C -0.147 4.147 9 C 0.109 3.891 10 H 0.078 0.922 11 C 0.014 3.986 12 N -0.364 5.364 13 C 0.296 3.704 14 O -0.463 6.463 15 C -0.168 4.168 16 C -0.058 4.058 17 H 0.073 0.927 18 C -0.201 4.201 19 C -0.170 4.170 20 C -0.224 4.224 21 C -0.209 4.209 22 N -0.357 5.357 23 C -0.360 4.360 24 H 0.086 0.914 25 C -0.251 4.251 26 N -0.611 5.611 27 Si 0.791 3.209 28 H -0.197 1.197 29 H -0.220 1.220 30 H -0.227 1.227 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.134 0.866 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.109 0.891 51 H 0.209 0.791 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.668 -7.192 -9.200 15.817 hybrid contribution 0.796 0.563 1.332 1.650 sum -9.872 -6.629 -7.868 14.259 Atomic orbital electron populations 1.23307 0.76802 1.05252 1.02134 1.86058 1.23169 1.26777 1.88736 1.19003 0.91446 0.85188 0.97321 1.21454 1.00883 0.91766 1.09105 1.21211 0.94056 0.97971 0.97133 1.21283 0.94825 0.98175 1.04715 1.20885 0.99885 0.91866 0.96006 1.20260 0.91288 0.97473 1.05642 1.19174 0.85970 0.92184 0.91743 0.92228 1.21255 0.93470 0.87579 0.96272 1.46034 1.48649 1.31433 1.10321 1.21247 0.81469 0.85015 0.82676 1.90608 1.55339 1.67331 1.33070 1.21736 0.99656 0.95496 0.99912 1.20357 0.95426 0.95882 0.94124 0.92701 1.21844 0.96443 1.00740 1.01060 1.22315 0.96604 1.00537 0.97518 1.23082 0.93589 1.01048 1.04682 1.22984 1.02798 0.99338 0.95740 1.42457 1.05884 1.83478 1.03868 1.19412 0.94194 1.38254 0.84121 0.91437 1.25293 0.95866 1.03153 1.00831 1.69790 1.00733 1.55897 1.34672 0.85274 0.77461 0.76479 0.81709 1.19696 1.21992 1.22680 0.91864 0.91596 0.86733 0.82937 0.82960 0.85023 0.87487 0.93801 0.91427 0.75305 0.86811 0.88116 0.92082 0.92268 0.93276 0.86591 0.89675 0.87887 0.87468 0.89089 0.79106 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.98 9.64 -92.37 -0.89 -10.87 16 3 C 0.12 3.82 6.66 22.51 0.15 3.97 16 4 C -0.21 -5.74 9.04 22.37 0.20 -5.53 16 5 C -0.09 -2.27 10.04 22.25 0.22 -2.04 16 6 C -0.17 -5.46 10.04 22.28 0.22 -5.24 16 7 C -0.07 -2.64 9.32 22.26 0.21 -2.44 16 8 C -0.14 -5.47 5.04 -19.77 -0.10 -5.57 16 9 C 0.22 8.74 2.37 44.25 0.10 8.85 16 10 H 0.06 2.48 7.64 -2.39 -0.02 2.46 16 11 C 0.14 5.19 5.22 86.38 0.45 5.64 16 12 N -0.71 -24.54 5.39 -463.04 -2.50 -27.04 16 13 C 0.51 16.81 7.55 87.66 0.66 17.48 16 14 O -0.58 -22.74 13.97 -3.02 -0.04 -22.78 16 15 C -0.13 -3.21 5.16 29.85 0.15 -3.05 16 16 C -0.04 -0.93 2.19 -10.80 -0.02 -0.95 16 17 H 0.05 1.55 7.71 -2.39 -0.02 1.53 16 18 C -0.14 -3.40 8.77 71.98 0.63 -2.76 16 19 C -0.15 -2.89 5.15 -10.79 -0.06 -2.95 16 20 C -0.19 -3.45 10.18 30.59 0.31 -3.14 16 21 C -0.17 -2.88 9.73 30.59 0.30 -2.58 16 22 N -0.72 -33.64 3.30 -326.51 -1.08 -34.72 16 23 C -0.23 -11.90 9.92 84.03 0.83 -11.07 16 24 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 25 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 26 N -0.96 -55.53 13.06 21.65 0.28 -55.25 16 27 Si 0.96 44.72 29.55 68.60 2.03 46.75 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 30 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 31 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 32 H 0.07 1.04 7.67 -2.39 -0.02 1.03 16 33 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.15 2.99 6.30 -2.91 -0.02 2.98 16 35 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.11 4.76 7.26 -2.91 -0.02 4.74 16 38 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.41 14.06 8.14 -92.71 -0.75 13.31 16 41 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.25 7.29 -2.39 -0.02 1.24 16 45 H 0.05 1.44 5.95 -2.38 -0.01 1.43 16 46 H 0.12 1.95 8.11 -2.39 -0.02 1.93 16 47 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 48 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.09 1.57 7.61 -2.39 -0.02 1.55 16 51 H 0.38 19.21 7.80 -92.71 -0.72 18.48 16 52 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -65.76 422.48 3.11 -62.65 By element: Atomic # 1 Polarization: 54.44 SS G_CDS: -0.55 Total: 53.89 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 5.85 Total: -12.63 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -3.29 Total: -117.01 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.93 Total: -33.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.76 3.11 -62.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198994370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.335 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds