Wall clock time and date at job start Sat Apr 11 2020 08:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47228 * 2 1 4 4 C 1.52995 * 109.47410 * 239.99800 * 2 1 3 5 5 C 1.53004 * 109.47149 * 65.00167 * 4 2 1 6 6 C 1.53003 * 109.46849 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46611 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00075 * 269.72154 * 7 6 5 9 9 C 1.38230 * 120.00204 * 180.34809 * 8 7 6 10 10 C 1.38239 * 119.99836 * 359.90878 * 9 8 7 11 11 C 1.38230 * 119.99812 * 0.04339 * 10 9 8 12 12 C 1.38227 * 120.00513 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47084 * 119.99814 * 2 1 3 14 14 O 1.21284 * 120.00176 * 119.99552 * 13 2 1 15 15 N 1.34778 * 119.99774 * 300.00495 * 13 2 1 16 16 C 1.46502 * 119.99924 * 179.97438 * 15 13 2 17 17 H 1.09005 * 110.88504 * 31.12001 * 16 15 13 18 18 C 1.54907 * 111.00598 * 267.19276 * 16 15 13 19 19 N 1.47419 * 104.83197 * 204.91661 * 18 16 15 20 20 C 1.36939 * 125.64760 * 204.08785 * 19 18 16 21 21 H 1.08001 * 119.99970 * 354.82816 * 20 19 18 22 22 C 1.38813 * 120.00307 * 174.84336 * 20 19 18 23 23 N 1.31619 * 119.99765 * 7.03903 * 22 20 19 24 24 Si 1.86803 * 120.00193 * 187.05074 * 22 20 19 25 25 H 1.48496 * 109.47297 * 94.98168 * 24 22 20 26 26 H 1.48493 * 109.47037 * 214.98138 * 24 22 20 27 27 H 1.48493 * 109.46858 * 334.98074 * 24 22 20 28 28 C 1.47022 * 108.70577 * 24.12830 * 19 18 16 29 29 C 1.54324 * 107.26860 * 358.94083 * 28 19 18 30 30 H 1.08999 * 110.71601 * 96.17161 * 29 28 19 31 31 O 1.42897 * 110.87041 * 219.37421 * 29 28 19 32 32 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47141 * 300.00375 * 1 2 3 34 34 H 1.09002 * 109.47075 * 60.00392 * 1 2 3 35 35 H 1.08999 * 109.47062 * 304.99991 * 4 2 1 36 36 H 1.09002 * 109.47183 * 185.00538 * 4 2 1 37 37 H 1.09000 * 109.46778 * 60.00098 * 5 4 2 38 38 H 1.09000 * 109.46652 * 300.00130 * 5 4 2 39 39 H 1.08999 * 109.47483 * 59.99749 * 6 5 4 40 40 H 1.09002 * 109.46601 * 299.99495 * 6 5 4 41 41 H 1.08001 * 119.99743 * 0.27961 * 8 7 6 42 42 H 1.08006 * 120.00013 * 179.97438 * 9 8 7 43 43 H 1.08004 * 119.99507 * 180.02562 * 10 9 8 44 44 H 1.08000 * 119.99614 * 180.02562 * 11 10 9 45 45 H 1.08001 * 120.00618 * 179.97438 * 12 11 10 46 46 H 0.97001 * 120.00342 * 359.97438 * 15 13 2 47 47 H 1.08999 * 110.36511 * 323.75571 * 18 16 15 48 48 H 1.09003 * 110.36606 * 86.07723 * 18 16 15 49 49 H 0.97004 * 120.00127 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.88207 * 239.52293 * 28 19 18 51 51 H 1.08997 * 110.01341 * 118.43239 * 28 19 18 52 52 H 0.96707 * 113.99761 * 293.60893 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0689 -2.4953 6 6 2.1449 -0.6528 -3.7445 7 6 1.7468 0.1259 -4.9719 8 6 0.5435 -0.1392 -5.5984 9 6 0.1816 0.5700 -6.7284 10 6 1.0222 1.5457 -7.2307 11 6 2.2251 1.8114 -6.6036 12 6 2.5876 1.1013 -5.4745 13 6 2.0323 -0.7104 1.2305 14 8 2.7295 -1.6965 1.1193 15 7 1.7066 -0.2499 2.4546 16 6 2.1944 -0.9408 3.6508 17 1 3.1646 -1.4016 3.4649 18 6 1.1663 -1.9889 4.1448 19 7 1.4477 -2.1446 5.5835 20 6 1.1456 -3.2444 6.3414 21 1 0.5851 -4.0603 5.9095 22 6 1.5595 -3.3104 7.6647 23 7 2.1194 -2.2631 8.2321 24 14 1.3222 -4.8858 8.6401 25 1 2.5648 -5.6966 8.5811 26 1 1.0162 -4.5511 10.0541 27 1 0.1967 -5.6620 8.0605 28 6 2.1054 -0.9230 6.0702 29 6 2.2610 0.0256 4.8629 30 1 1.4418 0.7439 4.8288 31 8 3.5205 0.6993 4.9038 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.6054 -1.7198 -1.2950 36 1 3.1264 -0.7995 -1.2054 37 1 2.0700 1.0674 -2.4493 38 1 0.5490 0.1471 -2.5389 39 1 1.7100 -1.6512 -3.7902 40 1 3.2312 -0.7313 -3.7010 41 1 -0.1134 -0.9012 -5.2057 42 1 -0.7585 0.3626 -7.2181 43 1 0.7392 2.1001 -8.1134 44 1 2.8816 2.5740 -6.9958 45 1 3.5276 1.3086 -4.9847 46 1 1.1492 0.5390 2.5436 47 1 0.1504 -1.6240 3.9942 48 1 1.3110 -2.9362 3.6253 49 1 2.4090 -2.3093 9.1568 50 1 3.0861 -1.1675 6.4784 51 1 1.4924 -0.4496 6.8371 52 1 3.6131 1.3154 5.6434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199225752.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:45 Heat of formation + Delta-G solvation = -79.330577 kcal Electronic energy + Delta-G solvation = -29528.466381 eV Core-core repulsion = 25491.605480 eV Total energy + Delta-G solvation = -4036.860901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.21121 -40.15057 -39.52967 -36.97794 -36.68445 -35.57674 -34.26857 -33.49358 -31.71126 -30.87889 -30.02690 -28.74053 -27.19901 -26.47903 -24.97973 -23.39976 -22.83003 -22.27887 -21.83572 -21.57892 -20.74002 -19.08620 -18.41126 -17.87004 -17.59032 -17.33031 -16.65131 -16.56685 -16.10977 -16.00635 -15.83146 -15.58384 -15.23843 -14.87903 -14.52096 -14.47782 -14.29029 -14.19410 -14.09641 -13.87295 -13.72632 -13.48530 -13.18579 -13.09442 -13.03992 -12.79887 -12.76380 -12.70776 -12.45135 -12.17440 -12.08978 -11.91049 -11.80867 -11.78556 -11.61891 -11.50592 -11.35871 -11.06306 -10.77382 -10.65396 -10.13035 -9.76988 -9.52617 -8.98115 -7.91889 -5.27642 0.50732 0.55196 1.44009 1.47069 1.55219 1.66919 2.10232 2.46600 2.93261 3.12553 3.28810 3.54809 3.63664 3.77301 3.88054 3.95617 4.02742 4.04995 4.07575 4.18229 4.22637 4.33243 4.34765 4.39976 4.45232 4.55705 4.61034 4.64655 4.68100 4.71282 4.80576 4.85609 4.91173 4.96738 5.01567 5.08535 5.15793 5.19604 5.26666 5.28316 5.33514 5.43145 5.44493 5.48378 5.54002 5.63913 5.64636 5.68387 5.80786 6.11851 6.18939 6.58585 6.85933 7.02836 7.30047 7.67531 8.30438 9.18338 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.001640 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.631461 B =17068.177382 C =17630.828997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.122 0.878 4 C -0.097 4.097 5 C -0.101 4.101 6 C -0.082 4.082 7 C -0.088 4.088 8 C -0.131 4.131 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.510 3.490 14 O -0.589 6.589 15 N -0.701 5.701 16 C 0.152 3.848 17 H 0.067 0.933 18 C 0.132 3.868 19 N -0.622 5.622 20 C -0.250 4.250 21 H 0.081 0.919 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.979 3.021 25 H -0.290 1.290 26 H -0.289 1.289 27 H -0.267 1.267 28 C 0.160 3.840 29 C 0.091 3.909 30 H 0.096 0.904 31 O -0.570 6.570 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.416 0.584 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.250 0.750 50 H 0.021 0.979 51 H 0.025 0.975 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 13.653 -28.008 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.139 0.861 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.088 4.088 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.155 4.155 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.299 3.701 14 O -0.468 6.468 15 N -0.353 5.353 16 C 0.045 3.955 17 H 0.085 0.915 18 C 0.006 3.994 19 N -0.350 5.350 20 C -0.379 4.379 21 H 0.099 0.901 22 C -0.253 4.253 23 N -0.594 5.594 24 Si 0.806 3.194 25 H -0.217 1.217 26 H -0.215 1.215 27 H -0.192 1.192 28 C 0.034 3.966 29 C 0.031 3.969 30 H 0.113 0.887 31 O -0.377 6.377 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.254 0.746 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.039 0.961 51 H 0.043 0.957 52 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.154 12.547 -28.413 31.337 hybrid contribution -0.039 -0.512 1.660 1.738 sum -4.193 12.036 -26.753 29.634 Atomic orbital electron populations 1.21858 0.91138 1.02710 1.04331 1.21352 0.98854 1.01239 0.90490 0.86064 1.21365 1.00703 0.98859 0.92592 1.21532 1.01885 0.98860 0.91524 1.20617 1.01480 0.98372 0.91452 1.20056 0.94880 0.96949 0.96883 1.21294 0.96611 1.00616 0.96384 1.21439 1.00393 0.96253 0.96468 1.21448 0.94764 0.98498 1.00793 1.21428 0.97293 0.99978 0.95891 1.21293 1.00157 0.96497 0.97070 1.21565 0.78866 0.84062 0.85631 1.90694 1.40057 1.28690 1.87397 1.45738 1.53368 1.31841 1.04347 1.21700 0.97178 0.92564 0.84087 0.91452 1.21925 0.96417 0.96642 0.84463 1.44501 1.70378 1.15604 1.04471 1.19443 1.29604 0.95585 0.93265 0.90084 1.25662 1.00742 1.00884 0.98008 1.70132 1.47228 1.29367 1.12632 0.85063 0.77744 0.78939 0.77613 1.21707 1.21539 1.19200 1.21627 0.96244 0.85876 0.92826 1.23157 0.86582 0.93212 0.93969 0.88663 1.86439 1.35938 1.61309 1.54036 0.93214 0.90903 0.88988 0.92603 0.92816 0.91069 0.90471 0.90962 0.91160 0.85272 0.84579 0.84523 0.84641 0.85423 0.74622 0.93822 0.95083 0.94099 0.96122 0.95671 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.84 71.98 0.64 -1.34 16 2 C -0.10 -1.79 2.72 -11.54 -0.03 -1.82 16 3 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.10 -1.84 4.03 30.59 0.12 -1.72 16 5 C -0.10 -1.35 4.95 30.60 0.15 -1.20 16 6 C -0.08 -1.17 5.35 29.85 0.16 -1.01 16 7 C -0.09 -1.31 5.13 -19.86 -0.10 -1.41 16 8 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16 9 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 10 C -0.14 -1.67 10.05 22.27 0.22 -1.45 16 11 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 12 C -0.13 -1.89 9.70 22.27 0.22 -1.68 16 13 C 0.51 14.78 7.15 87.66 0.63 15.41 16 14 O -0.59 -23.25 15.56 -3.04 -0.05 -23.30 16 15 N -0.70 -19.40 5.09 -435.95 -2.22 -21.62 16 16 C 0.15 5.72 3.15 46.38 0.15 5.87 16 17 H 0.07 3.08 7.54 -2.38 -0.02 3.06 16 18 C 0.13 5.71 6.93 86.86 0.60 6.31 16 19 N -0.62 -32.61 3.39 -692.00 -2.35 -34.96 16 20 C -0.25 -14.35 10.27 84.03 0.86 -13.49 16 21 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 22 C -0.06 -3.40 5.48 84.86 0.46 -2.94 16 23 N -0.95 -56.34 10.36 21.65 0.22 -56.11 16 24 Si 0.98 46.17 29.56 68.60 2.03 48.20 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 C 0.16 7.76 5.16 86.73 0.45 8.21 16 29 C 0.09 3.26 3.97 31.78 0.13 3.38 16 30 H 0.10 2.73 8.00 -2.39 -0.02 2.71 16 31 O -0.57 -19.04 13.40 -148.98 -2.00 -21.04 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.85 7.56 -2.39 -0.02 0.83 16 34 H 0.09 0.88 6.57 -2.39 -0.02 0.86 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.22 7.95 -2.39 -0.02 1.20 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 39 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.07 1.03 8.08 -2.39 -0.02 1.02 16 41 H 0.13 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.42 8.21 7.99 -92.71 -0.74 7.47 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.02 1.16 7.22 -2.39 -0.02 1.14 16 51 H 0.03 1.31 7.61 -2.39 -0.02 1.29 16 52 H 0.40 9.71 9.12 -74.05 -0.68 9.03 16 Total: -1.00 -76.96 418.94 0.46 -76.51 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.50 Total: 25.62 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.32 Total: 6.70 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.34 Total: -112.69 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -2.04 Total: -44.34 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.96 0.46 -76.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199225752.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds