Wall clock time and date at job start Sat Apr 11 2020 08:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47082 * 120.00095 * 2 1 3 5 5 C 1.53001 * 109.47084 * 295.00311 * 4 2 1 6 6 C 1.50702 * 109.47225 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00271 * 89.99331 * 6 5 4 8 8 C 1.38230 * 119.99880 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00326 * 359.97438 * 8 7 6 10 10 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 11 11 C 1.38234 * 119.99485 * 269.97459 * 6 5 4 12 12 C 1.53002 * 109.46923 * 240.00307 * 2 1 3 13 13 C 1.50693 * 109.47331 * 65.00080 * 12 2 1 14 14 O 1.21284 * 119.99980 * 359.97438 * 13 12 2 15 15 N 1.34780 * 120.00167 * 180.02562 * 13 12 2 16 16 C 1.46499 * 120.00083 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.64198 * 36.68112 * 16 15 13 18 18 C 1.54328 * 110.71581 * 273.54149 * 16 15 13 19 19 N 1.47021 * 107.26794 * 219.44202 * 18 16 15 20 20 C 1.36935 * 125.64806 * 178.97671 * 19 18 16 21 21 H 1.08003 * 120.00096 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00138 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00189 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46820 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47099 * 119.99857 * 24 22 20 27 27 H 1.48500 * 109.46986 * 240.00301 * 24 22 20 28 28 C 1.47427 * 108.70408 * 358.94625 * 19 18 16 29 29 C 1.54909 * 104.83184 * 24.12486 * 28 19 18 30 30 H 1.09000 * 110.99983 * 81.06725 * 29 28 19 31 31 O 1.42903 * 111.00168 * 204.91580 * 29 28 19 32 32 H 1.08997 * 109.46957 * 60.00114 * 1 2 3 33 33 H 1.08997 * 109.46797 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46812 * 300.00010 * 1 2 3 35 35 H 1.08991 * 109.46904 * 175.00341 * 4 2 1 36 36 H 1.09004 * 109.47138 * 54.99777 * 4 2 1 37 37 H 1.09003 * 109.47380 * 59.99807 * 5 4 2 38 38 H 1.09009 * 109.47137 * 299.99891 * 5 4 2 39 39 H 1.08001 * 119.99769 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.00376 * 180.02562 * 8 7 6 41 41 H 1.08000 * 120.00616 * 179.72578 * 9 8 7 42 42 H 1.08001 * 120.00299 * 179.97438 * 10 9 8 43 43 H 1.07997 * 120.00489 * 0.02562 * 11 6 5 44 44 H 1.09001 * 109.46630 * 184.99918 * 12 2 1 45 45 H 1.09004 * 109.46860 * 304.99484 * 12 2 1 46 46 H 0.96993 * 119.99482 * 359.97438 * 15 13 12 47 47 H 1.08998 * 109.88527 * 338.86047 * 18 16 15 48 48 H 1.09002 * 109.88087 * 100.02694 * 18 16 15 49 49 H 0.96998 * 120.00668 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.36602 * 142.96812 * 28 19 18 51 51 H 1.08998 * 110.36271 * 265.17527 * 28 19 18 52 52 H 0.96694 * 114.00112 * 292.20168 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.1381 -0.6412 3.7258 7 6 3.3915 -0.3476 4.2296 8 6 3.8524 -0.9986 5.3585 9 6 3.0599 -1.9428 5.9840 10 6 1.8061 -2.2356 5.4808 11 6 1.3458 -1.5859 4.3508 12 6 2.0401 -0.7212 -1.2493 13 6 1.6414 0.0571 -2.4766 14 8 1.0110 1.0870 -2.3632 15 7 1.9845 -0.3918 -3.7002 16 6 1.5975 0.3651 -4.8933 17 1 1.6516 1.4369 -4.7027 18 6 0.1817 -0.0359 -5.3587 19 7 0.2016 -0.0802 -6.8281 20 6 -0.8558 -0.4157 -7.6308 21 1 -1.8066 -0.6773 -7.1902 22 6 -0.7059 -0.4196 -9.0108 23 7 0.4528 -0.1014 -9.5478 24 14 -2.1486 -0.8767 -10.1059 25 1 -3.3298 -1.1915 -9.2626 26 1 -2.4697 0.2625 -11.0027 27 1 -1.7933 -2.0649 -10.9226 28 6 1.5484 0.2971 -7.2943 29 6 2.4853 -0.0267 -6.1039 30 1 2.7333 -1.0878 -6.0794 31 8 3.6687 0.7729 -6.1513 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 0.5489 0.1471 2.5390 38 1 2.0699 1.0675 2.4495 39 1 4.0105 0.3903 3.7411 40 1 4.8314 -0.7690 5.7524 41 1 3.4217 -2.4547 6.8635 42 1 1.1870 -2.9736 5.9692 43 1 0.3666 -1.8154 3.9572 44 1 3.1264 -0.7994 -1.2056 45 1 1.6055 -1.7198 -1.2952 46 1 2.4883 -1.2157 -3.7908 47 1 -0.0748 -1.0180 -4.9616 48 1 -0.5433 0.7042 -5.0199 49 1 0.5578 -0.1045 -10.5121 50 1 1.8267 -0.2929 -8.1675 51 1 1.5843 1.3609 -7.5290 52 1 4.2549 0.5643 -6.8914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199323867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:07 Heat of formation + Delta-G solvation = -53.624776 kcal Electronic energy + Delta-G solvation = -29543.808244 eV Core-core repulsion = 25508.062030 eV Total energy + Delta-G solvation = -4035.746214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.95084 -39.55434 -38.01200 -36.44614 -35.08229 -34.00450 -32.98792 -31.74616 -31.19329 -29.37203 -28.38554 -27.62759 -26.67883 -24.78985 -24.15155 -22.87603 -21.56854 -20.81574 -20.54634 -19.93095 -19.73389 -17.29405 -17.09664 -17.00333 -16.55161 -15.88664 -15.70480 -15.46394 -15.26305 -14.83746 -14.53936 -14.19321 -14.00456 -13.80100 -13.68531 -13.44539 -13.23532 -13.11788 -12.92724 -12.65825 -12.45816 -12.22547 -12.08674 -11.87746 -11.58211 -11.51040 -11.45675 -11.27318 -11.22308 -10.98907 -10.89046 -10.86699 -10.75714 -10.66480 -10.16437 -9.94276 -9.74250 -9.65112 -9.23353 -9.23147 -8.95241 -8.74080 -8.72920 -6.93288 -5.73780 -3.16117 1.05129 1.08848 2.86799 3.34698 3.37020 3.42297 3.44638 3.49310 4.37965 4.42599 4.51487 4.60618 4.64624 4.69122 4.76037 4.79601 4.87650 5.03280 5.17515 5.21301 5.26479 5.27742 5.38026 5.40480 5.46804 5.51110 5.56514 5.61961 5.62436 5.66921 5.73967 5.76798 5.85769 5.87650 5.91777 6.03617 6.09980 6.16275 6.19756 6.20448 6.29194 6.36223 6.43692 6.55721 6.67599 6.70746 6.94770 7.30307 7.51756 7.68130 7.77386 8.08231 8.23988 8.48272 9.12508 9.73028 10.35515 11.30534 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.001657 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.293726 B =16898.099791 C =17639.656171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.074 4.074 3 H 0.079 0.921 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.137 4.137 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.718 5.718 16 C 0.142 3.858 17 H 0.098 0.902 18 C 0.131 3.869 19 N -0.601 5.601 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.011 4.011 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.129 3.871 29 C 0.067 3.933 30 H 0.061 0.939 31 O -0.566 6.566 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.397 0.603 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.253 0.747 50 H 0.112 0.888 51 H 0.025 0.975 52 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 -4.889 26.315 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.093 4.093 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.177 4.177 13 C 0.298 3.702 14 O -0.415 6.415 15 N -0.368 5.368 16 C 0.038 3.962 17 H 0.116 0.884 18 C 0.004 3.996 19 N -0.328 5.328 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.207 4.207 23 N -0.573 5.573 24 Si 0.748 3.252 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.003 3.997 29 C 0.007 3.993 30 H 0.079 0.921 31 O -0.371 6.371 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.231 0.769 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.064 0.936 50 H 0.130 0.870 51 H 0.043 0.957 52 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.663 -3.894 26.714 28.063 hybrid contribution -0.187 -0.940 -1.122 1.475 sum 7.476 -4.834 25.593 27.097 Atomic orbital electron populations 1.22012 0.94618 1.01447 1.03184 1.20889 0.96778 0.99816 0.91820 0.90285 1.21630 1.00880 0.99091 0.92889 1.20704 1.01628 0.98593 0.91207 1.19996 0.94351 0.96703 0.96622 1.21094 0.95738 1.00281 0.96588 1.21155 0.99741 0.96793 0.96039 1.21139 0.94797 0.98538 1.00260 1.21160 0.96216 0.99794 0.96547 1.21095 0.99924 0.96663 0.95968 1.21753 1.02668 1.00308 0.92996 1.20636 0.79236 0.85792 0.84565 1.90670 1.39615 1.24624 1.86550 1.46049 1.57459 1.27462 1.05843 1.21977 0.94373 0.97167 0.82729 0.88401 1.21623 0.93374 0.98283 0.86338 1.44304 1.09103 1.80373 0.99044 1.19160 0.90018 1.38231 0.87562 0.90153 1.24801 0.97558 1.01801 0.96495 1.69741 1.22335 1.55060 1.10164 0.85951 0.81157 0.77666 0.80452 1.20447 1.21647 1.21695 1.22543 0.82953 0.99547 0.94616 1.23633 0.85433 0.93057 0.97209 0.92090 1.86412 1.34069 1.63492 1.53116 0.90387 0.93413 0.92877 0.91849 0.91733 0.90492 0.90866 0.86094 0.86218 0.86325 0.86213 0.86085 0.89143 0.89028 0.76909 0.95282 0.94904 0.93650 0.87003 0.95673 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.69 37.16 0.32 -1.37 16 2 C -0.07 -0.73 2.04 -90.61 -0.18 -0.92 16 3 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 4 C -0.11 -0.84 4.67 -26.73 -0.12 -0.97 16 5 C -0.08 -0.65 5.10 -27.88 -0.14 -0.79 16 6 C -0.08 -0.63 5.13 -104.62 -0.54 -1.16 16 7 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 8 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 9 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 10 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 11 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 12 C -0.14 -1.37 5.17 -27.89 -0.14 -1.52 16 13 C 0.51 7.46 7.54 -10.99 -0.08 7.38 16 14 O -0.54 -9.86 13.69 5.55 0.08 -9.78 16 15 N -0.72 -10.62 5.13 -52.04 -0.27 -10.88 16 16 C 0.14 2.68 2.97 -66.10 -0.20 2.49 16 17 H 0.10 2.07 7.69 -51.93 -0.40 1.67 16 18 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16 19 N -0.60 -15.35 3.39 -170.07 -0.58 -15.93 16 20 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 24 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 C 0.13 3.07 5.62 -2.53 -0.01 3.06 16 29 C 0.07 1.25 4.04 -24.59 -0.10 1.15 16 30 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 31 O -0.57 -9.64 13.47 -35.23 -0.47 -10.11 16 32 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.59 6.51 -51.93 -0.34 0.25 16 38 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.40 4.74 8.52 -40.82 -0.35 4.39 16 47 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 48 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 51 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.38 4.85 9.12 45.56 0.42 5.27 16 LS Contribution 415.64 15.07 6.26 6.26 Total: -1.00 -32.94 415.64 -10.79 -43.73 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.91 Total: 8.69 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.44 Total: -3.04 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.28 Total: -52.57 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.40 Total: -19.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.94 -10.79 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199323867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.897 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds