Wall clock time and date at job start Sat Apr 11 2020 08:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08997 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47082 * 120.00095 * 2 1 3 5 5 C 1.53001 * 109.47084 * 295.00311 * 4 2 1 6 6 C 1.50702 * 109.47225 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00271 * 89.99331 * 6 5 4 8 8 C 1.38230 * 119.99880 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00326 * 359.97438 * 8 7 6 10 10 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 11 11 C 1.38234 * 119.99485 * 269.97459 * 6 5 4 12 12 C 1.53002 * 109.46923 * 240.00307 * 2 1 3 13 13 C 1.50693 * 109.47331 * 65.00080 * 12 2 1 14 14 O 1.21284 * 119.99980 * 359.97438 * 13 12 2 15 15 N 1.34780 * 120.00167 * 180.02562 * 13 12 2 16 16 C 1.46499 * 120.00083 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.64198 * 36.68112 * 16 15 13 18 18 C 1.54328 * 110.71581 * 273.54149 * 16 15 13 19 19 N 1.47021 * 107.26794 * 219.44202 * 18 16 15 20 20 C 1.36935 * 125.64806 * 178.97671 * 19 18 16 21 21 H 1.08003 * 120.00096 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00138 * 180.02562 * 20 19 18 23 23 N 1.31613 * 120.00189 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46820 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47099 * 119.99857 * 24 22 20 27 27 H 1.48500 * 109.46986 * 240.00301 * 24 22 20 28 28 C 1.47427 * 108.70408 * 358.94625 * 19 18 16 29 29 C 1.54909 * 104.83184 * 24.12486 * 28 19 18 30 30 H 1.09000 * 110.99983 * 81.06725 * 29 28 19 31 31 O 1.42903 * 111.00168 * 204.91580 * 29 28 19 32 32 H 1.08997 * 109.46957 * 60.00114 * 1 2 3 33 33 H 1.08997 * 109.46797 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46812 * 300.00010 * 1 2 3 35 35 H 1.08991 * 109.46904 * 175.00341 * 4 2 1 36 36 H 1.09004 * 109.47138 * 54.99777 * 4 2 1 37 37 H 1.09003 * 109.47380 * 59.99807 * 5 4 2 38 38 H 1.09009 * 109.47137 * 299.99891 * 5 4 2 39 39 H 1.08001 * 119.99769 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.00376 * 180.02562 * 8 7 6 41 41 H 1.08000 * 120.00616 * 179.72578 * 9 8 7 42 42 H 1.08001 * 120.00299 * 179.97438 * 10 9 8 43 43 H 1.07997 * 120.00489 * 0.02562 * 11 6 5 44 44 H 1.09001 * 109.46630 * 184.99918 * 12 2 1 45 45 H 1.09004 * 109.46860 * 304.99484 * 12 2 1 46 46 H 0.96993 * 119.99482 * 359.97438 * 15 13 12 47 47 H 1.08998 * 109.88527 * 338.86047 * 18 16 15 48 48 H 1.09002 * 109.88087 * 100.02694 * 18 16 15 49 49 H 0.96998 * 120.00668 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.36602 * 142.96812 * 28 19 18 51 51 H 1.08998 * 110.36271 * 265.17527 * 28 19 18 52 52 H 0.96694 * 114.00112 * 292.20168 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.1381 -0.6412 3.7258 7 6 3.3915 -0.3476 4.2296 8 6 3.8524 -0.9986 5.3585 9 6 3.0599 -1.9428 5.9840 10 6 1.8061 -2.2356 5.4808 11 6 1.3458 -1.5859 4.3508 12 6 2.0401 -0.7212 -1.2493 13 6 1.6414 0.0571 -2.4766 14 8 1.0110 1.0870 -2.3632 15 7 1.9845 -0.3918 -3.7002 16 6 1.5975 0.3651 -4.8933 17 1 1.6516 1.4369 -4.7027 18 6 0.1817 -0.0359 -5.3587 19 7 0.2016 -0.0802 -6.8281 20 6 -0.8558 -0.4157 -7.6308 21 1 -1.8066 -0.6773 -7.1902 22 6 -0.7059 -0.4196 -9.0108 23 7 0.4528 -0.1014 -9.5478 24 14 -2.1486 -0.8767 -10.1059 25 1 -3.3298 -1.1915 -9.2626 26 1 -2.4697 0.2625 -11.0027 27 1 -1.7933 -2.0649 -10.9226 28 6 1.5484 0.2971 -7.2943 29 6 2.4853 -0.0267 -6.1039 30 1 2.7333 -1.0878 -6.0794 31 8 3.6687 0.7729 -6.1513 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 0.5489 0.1471 2.5390 38 1 2.0699 1.0675 2.4495 39 1 4.0105 0.3903 3.7411 40 1 4.8314 -0.7690 5.7524 41 1 3.4217 -2.4547 6.8635 42 1 1.1870 -2.9736 5.9692 43 1 0.3666 -1.8154 3.9572 44 1 3.1264 -0.7994 -1.2056 45 1 1.6055 -1.7198 -1.2952 46 1 2.4883 -1.2157 -3.7908 47 1 -0.0748 -1.0180 -4.9616 48 1 -0.5433 0.7042 -5.0199 49 1 0.5578 -0.1045 -10.5121 50 1 1.8267 -0.2929 -8.1675 51 1 1.5843 1.3609 -7.5290 52 1 4.2549 0.5643 -6.8914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199323867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:03 Heat of formation + Delta-G solvation = -74.863066 kcal Electronic energy + Delta-G solvation = -29544.729205 eV Core-core repulsion = 25508.062030 eV Total energy + Delta-G solvation = -4036.667175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.14888 -40.17643 -39.49877 -37.29160 -36.69355 -35.50828 -33.76643 -33.50844 -31.70877 -30.62606 -29.65099 -28.84783 -28.07888 -26.34678 -25.17618 -23.39736 -22.65737 -22.27019 -21.69369 -21.27679 -20.67359 -19.10326 -18.48402 -17.86178 -17.60012 -17.30471 -16.66298 -16.44283 -16.22368 -16.03672 -15.66648 -15.62771 -15.21280 -14.86574 -14.75769 -14.56617 -14.22783 -14.06958 -14.00064 -13.88389 -13.69642 -13.36818 -13.25338 -13.12598 -13.08280 -12.80424 -12.76444 -12.69456 -12.22399 -12.15758 -12.02478 -11.95100 -11.82463 -11.62230 -11.53147 -11.43316 -11.33494 -11.10023 -10.80127 -10.61012 -10.10440 -9.76772 -9.51394 -8.98789 -7.83555 -5.29956 0.51115 0.55360 1.46324 1.47535 1.57877 1.71738 2.15831 2.46235 2.93565 3.07731 3.28094 3.62204 3.68299 3.83363 3.87017 3.95884 4.02635 4.08490 4.10661 4.20858 4.23135 4.34073 4.40709 4.42599 4.46876 4.61014 4.66329 4.70757 4.72945 4.73860 4.81191 4.83368 4.85974 4.91937 4.97917 5.15279 5.19022 5.22244 5.26424 5.31142 5.36316 5.42823 5.46767 5.56021 5.61197 5.64807 5.66587 5.68525 5.81763 6.19318 6.19792 6.61975 6.86092 7.03533 7.34464 7.67499 8.29811 9.18329 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.001657 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.293726 B =16898.099791 C =17639.656171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 H 0.061 0.939 4 C -0.096 4.096 5 C -0.081 4.081 6 C -0.087 4.087 7 C -0.132 4.132 8 C -0.128 4.128 9 C -0.138 4.138 10 C -0.128 4.128 11 C -0.131 4.131 12 C -0.127 4.127 13 C 0.506 3.494 14 O -0.580 6.580 15 N -0.707 5.707 16 C 0.157 3.843 17 H 0.071 0.929 18 C 0.133 3.867 19 N -0.619 5.619 20 C -0.244 4.244 21 H 0.080 0.920 22 C -0.061 4.061 23 N -0.946 5.946 24 Si 0.983 3.017 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.285 1.285 28 C 0.133 3.867 29 C 0.092 3.908 30 H 0.089 0.911 31 O -0.568 6.568 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.416 0.584 47 H 0.040 0.960 48 H 0.011 0.989 49 H 0.251 0.749 50 H 0.091 0.909 51 H -0.011 1.011 52 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -6.929 27.962 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.087 4.087 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.156 4.156 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.167 4.167 13 C 0.295 3.705 14 O -0.459 6.459 15 N -0.360 5.360 16 C 0.050 3.950 17 H 0.089 0.911 18 C 0.006 3.994 19 N -0.347 5.347 20 C -0.373 4.373 21 H 0.098 0.902 22 C -0.254 4.254 23 N -0.595 5.595 24 Si 0.811 3.189 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.211 1.211 28 C 0.007 3.993 29 C 0.032 3.968 30 H 0.106 0.894 31 O -0.376 6.376 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.253 0.747 47 H 0.058 0.942 48 H 0.029 0.971 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.007 0.993 52 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.721 -5.963 28.385 30.288 hybrid contribution -0.511 -0.241 -1.593 1.690 sum 8.209 -6.204 26.792 28.700 Atomic orbital electron populations 1.21965 0.95635 1.01694 1.01754 1.20842 0.95878 0.99271 0.92955 0.92065 1.21514 1.01315 0.98940 0.91536 1.20661 1.01485 0.98490 0.91235 1.20078 0.94687 0.97069 0.96913 1.21298 0.95922 1.00717 0.97057 1.21432 1.00574 0.96688 0.95910 1.21443 0.94774 0.98517 1.00820 1.21436 0.96638 1.00059 0.96488 1.21294 1.00381 0.96878 0.96392 1.21812 1.04543 1.00318 0.90015 1.21547 0.78044 0.85461 0.85445 1.90670 1.41383 1.26752 1.87107 1.45881 1.57588 1.27823 1.04664 1.21465 0.92780 0.96226 0.84492 0.91072 1.21669 0.95039 0.98075 0.84581 1.44561 1.09429 1.80186 1.00522 1.19483 0.90855 1.38539 0.88403 0.90198 1.25632 1.00155 1.01930 0.97670 1.69960 1.23889 1.55563 1.10133 0.84941 0.78468 0.77069 0.78396 1.19365 1.21990 1.21149 1.22376 0.83747 0.96850 0.96367 1.23239 0.84934 0.94466 0.94181 0.89365 1.86384 1.33454 1.63510 1.54219 0.93979 0.92266 0.92130 0.90956 0.91015 0.90681 0.91110 0.85340 0.84633 0.84564 0.84661 0.85356 0.86278 0.86617 0.74728 0.94190 0.97132 0.93960 0.89135 0.99273 0.75264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.69 71.99 0.63 -2.62 16 2 C -0.07 -1.28 2.04 -10.79 -0.02 -1.30 16 3 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 4 C -0.10 -1.27 4.67 30.59 0.14 -1.13 16 5 C -0.08 -1.15 5.10 29.85 0.15 -0.99 16 6 C -0.09 -1.31 5.13 -19.87 -0.10 -1.41 16 7 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 8 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 9 C -0.14 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 11 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 12 C -0.13 -2.19 5.17 29.85 0.15 -2.04 16 13 C 0.51 14.18 7.54 87.65 0.66 14.84 16 14 O -0.58 -21.62 13.69 -3.04 -0.04 -21.66 16 15 N -0.71 -19.71 5.13 -436.93 -2.24 -21.96 16 16 C 0.16 5.89 2.97 46.18 0.14 6.03 16 17 H 0.07 3.09 7.69 -2.39 -0.02 3.07 16 18 C 0.13 5.90 6.99 86.73 0.61 6.51 16 19 N -0.62 -32.38 3.39 -691.97 -2.35 -34.73 16 20 C -0.24 -13.78 10.27 84.03 0.86 -12.92 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 22 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 23 N -0.95 -54.88 10.09 21.65 0.22 -54.67 16 24 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 C 0.13 6.44 5.62 86.85 0.49 6.93 16 29 C 0.09 3.35 4.04 31.98 0.13 3.48 16 30 H 0.09 2.79 8.00 -2.39 -0.02 2.77 16 31 O -0.57 -18.49 13.47 -148.98 -2.01 -20.49 16 32 H 0.04 1.21 5.95 -2.39 -0.01 1.19 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.15 6.56 -2.39 -0.02 1.13 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 1.06 6.51 -2.39 -0.02 1.05 16 38 H 0.07 1.01 8.09 -2.38 -0.02 0.99 16 39 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.42 8.57 8.52 -92.71 -0.79 7.78 16 47 H 0.04 1.68 8.03 -2.39 -0.02 1.67 16 48 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 50 H 0.09 4.81 5.87 -2.39 -0.01 4.79 16 51 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 52 H 0.40 9.46 9.12 -74.06 -0.68 8.79 16 Total: -1.00 -73.80 415.64 0.47 -73.33 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.55 Total: 28.28 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.41 Total: 4.71 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.37 Total: -111.35 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -2.05 Total: -42.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -73.80 0.47 -73.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199323867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.529 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds