Wall clock time and date at job start Sat Apr 11 2020 08:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46613 * 2 1 4 4 C 1.52999 * 109.47074 * 120.00068 * 2 1 3 5 5 C 1.50697 * 109.47125 * 295.00144 * 4 2 1 6 6 O 1.21285 * 120.00121 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00019 * 180.02562 * 5 4 2 8 8 C 1.47503 * 118.75848 * 0.02562 * 7 5 4 9 9 C 1.53573 * 111.03106 * 221.62609 * 8 7 5 10 10 C 1.51534 * 109.58000 * 39.97757 * 9 8 7 11 11 O 1.42158 * 108.76478 * 268.60478 * 10 9 8 12 12 C 1.38013 * 119.44261 * 87.21486 * 11 10 9 13 13 H 1.09006 * 109.46188 * 56.58118 * 12 11 10 14 14 C 1.52992 * 109.47331 * 176.57427 * 12 11 10 15 15 N 1.46498 * 109.47364 * 300.00645 * 14 12 11 16 16 C 1.36935 * 120.00239 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 C 1.45128 * 118.76018 * 179.97438 * 7 5 4 25 25 C 1.50699 * 109.47128 * 240.00299 * 2 1 3 26 26 C 1.38234 * 120.00031 * 299.72507 * 25 2 1 27 27 C 1.38236 * 120.00305 * 179.78738 * 26 25 2 28 28 C 1.38239 * 119.99467 * 0.44468 * 27 26 25 29 29 C 1.38236 * 120.00367 * 359.80735 * 28 27 26 30 30 C 1.38233 * 120.00261 * 119.99880 * 25 2 1 31 31 H 1.08997 * 109.46985 * 60.00374 * 1 2 3 32 32 H 1.09008 * 109.46874 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47315 * 299.99479 * 1 2 3 34 34 H 1.08998 * 109.47037 * 174.99813 * 4 2 1 35 35 H 1.09000 * 109.47130 * 54.99892 * 4 2 1 36 36 H 1.09000 * 109.17026 * 101.22810 * 8 7 5 37 37 H 1.09005 * 109.12501 * 341.99865 * 8 7 5 38 38 H 1.08996 * 109.45317 * 279.94702 * 9 8 7 39 39 H 1.08998 * 109.43830 * 159.99622 * 9 8 7 40 40 H 1.08997 * 109.59307 * 148.82034 * 10 9 8 41 41 H 1.09005 * 109.59141 * 28.38382 * 10 9 8 42 42 H 1.09001 * 109.47602 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46922 * 60.00663 * 14 12 11 44 44 H 0.97004 * 119.99747 * 0.02562 * 15 14 12 45 45 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 46 46 H 1.09004 * 109.45500 * 330.69024 * 24 7 5 47 47 H 1.09003 * 109.46183 * 210.73181 * 24 7 5 48 48 H 1.08004 * 119.99643 * 359.97438 * 26 25 2 49 49 H 1.07993 * 120.00250 * 180.27024 * 27 26 25 50 50 H 1.08001 * 119.99726 * 179.83129 * 28 27 26 51 51 H 1.07994 * 120.00370 * 179.97438 * 29 28 27 52 52 H 1.07999 * 119.99750 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0869 2.3633 7 7 1.9853 -0.3914 3.7001 8 6 2.7525 -1.6468 3.8060 9 6 2.2321 -2.5150 4.9609 10 6 0.7187 -2.4507 5.0025 11 8 0.3296 -1.3921 5.8678 12 6 0.2069 -0.1135 5.3630 13 1 -0.4998 -0.1170 4.5330 14 6 -0.3015 0.8221 6.4616 15 7 -1.6076 0.3561 6.9341 16 6 -2.2620 1.0405 7.9233 17 1 -1.8154 1.9241 8.3549 18 6 -3.4993 0.5988 8.3713 19 7 -4.0460 -0.4750 7.8415 20 14 -4.3923 1.5328 9.7202 21 1 -5.6866 0.8654 10.0111 22 1 -3.5566 1.5488 10.9478 23 1 -4.6434 2.9268 9.2741 24 6 1.5879 0.3796 4.8636 25 6 2.0324 -0.7103 -1.2305 26 6 1.7031 -2.0354 -1.4464 27 6 2.1603 -2.6858 -2.5774 28 6 2.9543 -2.0136 -3.4877 29 6 3.2879 -0.6901 -3.2692 30 6 2.8271 -0.0385 -2.1404 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7198 1.2951 36 1 3.8023 -1.4110 3.9805 37 1 2.6609 -2.2012 2.8720 38 1 2.6371 -2.1463 5.9033 39 1 2.5474 -3.5473 4.8093 40 1 0.3229 -3.3941 5.3785 41 1 0.3331 -2.2637 4.0002 42 1 -0.3989 1.8318 6.0628 43 1 0.4050 0.8255 7.2916 44 1 -2.0085 -0.4377 6.5467 45 1 -3.5825 -0.9598 7.1408 46 1 1.5227 1.4341 4.5954 47 1 2.3272 0.2512 5.6542 48 1 1.0862 -2.5617 -0.7331 49 1 1.8994 -3.7197 -2.7483 50 1 3.3137 -2.5225 -4.3699 51 1 3.9085 -0.1651 -3.9801 52 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201989663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:26 Heat of formation + Delta-G solvation = -42.778864 kcal Electronic energy + Delta-G solvation = -30994.574878 eV Core-core repulsion = 26959.298978 eV Total energy + Delta-G solvation = -4035.275900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.83555 -39.73284 -38.58349 -35.80229 -35.33477 -34.73780 -32.99995 -31.23724 -30.88382 -30.36676 -29.14965 -27.65941 -26.57154 -24.84692 -23.77475 -22.90188 -22.59169 -21.80036 -21.07444 -20.48486 -18.92322 -17.77894 -17.26216 -16.90105 -16.63558 -16.41040 -16.06390 -15.58597 -15.45459 -15.02405 -14.70434 -14.30878 -14.06732 -13.91777 -13.74949 -13.63468 -13.57744 -13.37569 -13.16054 -12.97506 -12.73162 -12.63528 -12.49520 -12.15802 -11.90093 -11.69444 -11.60597 -11.46672 -11.35253 -11.12810 -10.99614 -10.86027 -10.65683 -10.49694 -10.30195 -9.92604 -9.75725 -9.46470 -9.23763 -9.12483 -9.01093 -8.80236 -8.58463 -6.89095 -6.00757 -2.98723 1.03408 1.08294 2.49186 2.81088 3.46919 3.57294 3.61799 3.78881 3.89079 4.15055 4.41313 4.53011 4.61248 4.61993 4.68115 4.74345 4.75279 4.79720 4.83163 4.90005 5.10096 5.16787 5.19484 5.21885 5.28992 5.30711 5.36741 5.39889 5.46172 5.48431 5.55724 5.68189 5.70434 5.71216 5.77292 5.84489 5.90659 5.93162 5.94180 6.03862 6.13784 6.16892 6.19759 6.26886 6.37555 6.46914 6.61556 6.68932 6.73498 7.17448 7.87910 7.94460 8.06813 8.86516 9.34301 10.20864 10.36969 11.48267 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.002192 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.934052 B =12772.143958 C =13283.870367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.507 3.493 6 O -0.528 6.528 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.167 4.167 10 C 0.073 3.927 11 O -0.369 6.369 12 C 0.089 3.911 13 H 0.050 0.950 14 C 0.172 3.828 15 N -0.736 5.736 16 C -0.329 4.329 17 H 0.064 0.936 18 C -0.048 4.048 19 N -0.945 5.945 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 C 0.082 3.918 25 C -0.074 4.074 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.119 4.119 30 C -0.116 4.116 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.027 0.973 44 H 0.370 0.630 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.125 -6.272 -21.374 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.295 3.705 6 O -0.404 6.404 7 N -0.344 5.344 8 C -0.018 4.018 9 C -0.205 4.205 10 C -0.003 4.003 11 O -0.288 6.288 12 C 0.028 3.972 13 H 0.068 0.932 14 C 0.044 3.956 15 N -0.382 5.382 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.591 5.591 20 Si 0.912 3.088 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.042 4.042 25 C -0.074 4.074 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.137 4.137 30 C -0.134 4.134 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.204 0.796 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.484 -5.504 -20.197 27.926 hybrid contribution 1.624 -0.384 -1.415 2.189 sum 20.108 -5.889 -21.612 30.102 Atomic orbital electron populations 1.21975 0.93381 1.01843 1.03542 1.19907 0.96974 0.99091 0.89510 0.89524 1.21805 1.02798 1.00147 0.92431 1.20743 0.79297 0.85867 0.84620 1.90706 1.39017 1.24499 1.86163 1.47976 1.55632 1.24481 1.06352 1.22006 0.95166 0.84528 1.00051 1.22508 0.98257 1.00301 0.99470 1.22118 0.92779 0.90988 0.94448 1.86433 1.88054 1.15580 1.38683 1.22297 0.94063 0.83455 0.97345 0.93245 1.20547 0.88609 0.93561 0.92925 1.42201 1.17925 1.32621 1.45463 1.20033 1.02981 1.08835 1.14112 0.91820 1.25775 0.95215 0.99618 1.03884 1.70853 1.40492 1.18886 1.28844 0.83228 0.76106 0.74514 0.74923 1.21085 1.22326 1.22314 1.22410 0.97530 0.97156 0.87099 1.19923 0.97073 0.94170 0.96195 1.21036 1.00094 0.94371 0.97798 1.21155 0.98008 0.99937 0.94550 1.21149 0.98937 0.94934 0.99481 1.21148 1.00068 0.94962 0.97522 1.21113 0.97885 0.99970 0.94455 0.92642 0.93106 0.90021 0.88901 0.88842 0.91429 0.89911 0.89912 0.89646 0.89290 0.93576 0.94731 0.95569 0.79639 0.93366 0.88835 0.89959 0.86111 0.86129 0.86278 0.86165 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.75 37.16 0.33 -1.33 16 2 C -0.04 -0.35 2.21 -91.77 -0.20 -0.55 16 3 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 4 C -0.13 -1.17 3.25 -27.88 -0.09 -1.26 16 5 C 0.51 6.34 7.35 -10.99 -0.08 6.26 16 6 O -0.53 -8.59 13.39 5.55 0.07 -8.52 16 7 N -0.61 -7.23 2.19 -172.40 -0.38 -7.60 16 8 C 0.10 0.88 6.00 -3.20 -0.02 0.86 16 9 C -0.17 -1.55 5.79 -27.18 -0.16 -1.71 16 10 C 0.07 0.95 6.37 36.42 0.23 1.18 16 11 O -0.37 -6.57 9.18 -26.53 -0.24 -6.81 16 12 C 0.09 1.59 2.74 -25.73 -0.07 1.52 16 13 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.17 3.76 5.95 -4.05 -0.02 3.74 16 15 N -0.74 -20.01 5.49 -59.91 -0.33 -20.34 16 16 C -0.33 -9.79 9.99 -15.06 -0.15 -9.94 16 17 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.05 -1.45 5.50 -17.43 -0.10 -1.54 16 19 N -0.94 -30.49 13.70 55.49 0.76 -29.73 16 20 Si 1.08 26.92 29.92 -169.99 -5.09 21.83 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.08 1.17 4.87 -3.77 -0.02 1.15 16 25 C -0.07 -0.64 4.78 -104.63 -0.50 -1.14 16 26 C -0.12 -0.93 8.76 -39.58 -0.35 -1.27 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.13 -0.91 10.05 -39.58 -0.40 -1.30 16 29 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 30 C -0.12 -0.96 9.67 -39.58 -0.38 -1.34 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.51 7.41 -51.92 -0.38 0.12 16 33 H 0.08 1.12 5.95 -51.93 -0.31 0.82 16 34 H 0.09 0.67 8.04 -51.93 -0.42 0.25 16 35 H 0.09 0.70 6.83 -51.93 -0.35 0.35 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.52 5.87 -51.93 -0.31 0.21 16 38 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.37 10.42 6.36 -40.82 -0.26 10.16 16 45 H 0.26 8.18 6.77 -40.82 -0.28 7.91 16 46 H 0.09 1.43 7.27 -51.93 -0.38 1.06 16 47 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 48 H 0.12 0.85 7.16 -52.48 -0.38 0.48 16 49 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 50 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 52 H 0.12 0.87 7.95 -52.49 -0.42 0.46 16 LS Contribution 407.13 15.07 6.14 6.14 Total: -1.00 -36.05 407.13 -10.37 -46.42 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.53 Total: 7.85 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.78 Total: -9.23 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.05 Total: -57.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.17 Total: -15.33 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -5.09 Total: 21.83 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.05 -10.37 -46.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201989663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.642 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds