Wall clock time and date at job start Sat Apr 11 2020 08:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.52998 * 109.46813 * 240.00320 * 2 1 3 5 5 C 1.50706 * 109.47348 * 65.00232 * 4 2 1 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00081 * 179.72561 * 5 4 2 8 8 C 1.47503 * 118.75658 * 359.72895 * 7 5 4 9 9 C 1.53205 * 111.23871 * 221.50804 * 8 7 5 10 10 C 1.51536 * 109.42696 * 40.27067 * 9 8 7 11 11 O 1.42154 * 108.76565 * 268.50521 * 10 9 8 12 12 C 1.38008 * 119.43919 * 87.21791 * 11 10 9 13 13 H 1.08998 * 109.47109 * 56.57381 * 12 11 10 14 14 C 1.53002 * 109.46659 * 176.57260 * 12 11 10 15 15 N 1.46497 * 109.46923 * 300.00824 * 14 12 11 16 16 C 1.36936 * 120.00020 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99868 * 359.97438 * 16 15 14 18 18 C 1.38822 * 120.00252 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99538 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00141 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46709 * 89.99689 * 20 18 16 22 22 H 1.48498 * 109.47052 * 209.99937 * 20 18 16 23 23 H 1.48503 * 109.46980 * 329.99858 * 20 18 16 24 24 C 1.45127 * 118.75553 * 180.02562 * 7 5 4 25 25 C 1.50695 * 109.47037 * 120.00502 * 2 1 3 26 26 C 1.38235 * 119.99908 * 59.72436 * 25 2 1 27 27 C 1.38241 * 120.00177 * 179.78667 * 26 25 2 28 28 C 1.38234 * 119.99480 * 0.44411 * 27 26 25 29 29 C 1.38233 * 120.00301 * 359.80724 * 28 27 26 30 30 C 1.38231 * 120.00246 * 239.99635 * 25 2 1 31 31 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46643 * 299.99881 * 1 2 3 33 33 H 1.09000 * 109.47034 * 59.98926 * 1 2 3 34 34 H 1.09001 * 109.47671 * 305.00441 * 4 2 1 35 35 H 1.08998 * 109.47454 * 185.00438 * 4 2 1 36 36 H 1.08994 * 109.17148 * 342.03575 * 8 7 5 37 37 H 1.09008 * 109.16440 * 101.23691 * 8 7 5 38 38 H 1.08989 * 109.61322 * 280.23207 * 9 8 7 39 39 H 1.09001 * 109.44588 * 160.20310 * 9 8 7 40 40 H 1.09004 * 109.58811 * 148.71637 * 10 9 8 41 41 H 1.09008 * 109.58926 * 28.28860 * 10 9 8 42 42 H 1.08996 * 109.47377 * 60.00984 * 14 12 11 43 43 H 1.09005 * 109.47303 * 180.02562 * 14 12 11 44 44 H 0.97002 * 120.00357 * 359.97438 * 15 14 12 45 45 H 0.97003 * 119.99514 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.45931 * 210.72681 * 24 7 5 47 47 H 1.09003 * 109.45793 * 330.69853 * 24 7 5 48 48 H 1.08007 * 120.00116 * 359.97438 * 26 25 2 49 49 H 1.07996 * 120.00439 * 180.27253 * 27 26 25 50 50 H 1.07999 * 120.00026 * 179.83435 * 28 27 26 51 51 H 1.08003 * 120.00261 * 180.02562 * 29 28 27 52 52 H 1.08001 * 119.99918 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9896 -0.3885 -3.6999 8 6 2.7661 -1.6382 -3.8053 9 6 3.8692 -1.5188 -4.8618 10 6 4.5058 -0.1465 -4.7728 11 8 3.8221 0.7330 -5.6559 12 6 2.7012 1.4042 -5.2113 13 1 2.9531 1.9836 -4.3231 14 6 2.2015 2.3452 -6.3094 15 7 3.2515 3.3123 -6.6388 16 6 3.0307 4.2614 -7.6009 17 1 2.0827 4.2969 -8.1170 18 6 4.0258 5.1775 -7.9134 19 7 5.1814 5.1340 -7.2847 20 14 3.7249 6.4718 -9.2263 21 1 3.1476 7.6879 -8.5993 22 1 5.0104 6.8171 -9.8848 23 1 2.7776 5.9394 -10.2384 24 6 1.5920 0.3826 -4.8633 25 6 2.0323 -0.7105 1.2304 26 6 1.6937 -2.0323 1.4519 27 6 2.1581 -2.6854 2.5783 28 6 2.9535 -2.0139 3.4878 29 6 3.2879 -0.6907 3.2689 30 6 2.8271 -0.0389 2.1403 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.6053 -1.7197 -1.2954 35 1 3.1263 -0.7995 -1.2057 36 1 3.2187 -1.8609 -2.8391 37 1 2.0970 -2.4530 -4.0824 38 1 3.4413 -1.6567 -5.8546 39 1 4.6263 -2.2824 -4.6838 40 1 5.5551 -0.2111 -5.0611 41 1 4.4276 0.2271 -3.7518 42 1 1.9495 1.7659 -7.1976 43 1 1.3164 2.8758 -5.9582 44 1 4.1028 3.2807 -6.1750 45 1 5.8768 5.7739 -7.5034 46 1 1.4381 -0.2883 -5.7084 47 1 0.6648 0.9135 -4.6475 48 1 1.0687 -2.5557 0.7433 49 1 1.8971 -3.7194 2.7491 50 1 3.3142 -2.5233 4.3692 51 1 3.9098 -0.1662 3.9793 52 1 3.0884 0.9950 1.9693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201989664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:30 Heat of formation + Delta-G solvation = -63.490235 kcal Electronic energy + Delta-G solvation = -30881.286549 eV Core-core repulsion = 26845.112537 eV Total energy + Delta-G solvation = -4036.174012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.78194 -40.43853 -39.60230 -36.94088 -36.31294 -35.97219 -34.31344 -32.67107 -31.76077 -31.19614 -30.23837 -28.94340 -27.51880 -26.54200 -24.84766 -24.08652 -23.37669 -22.79379 -22.29573 -21.21079 -19.75898 -19.27024 -18.57520 -17.80871 -17.55942 -17.45331 -17.04901 -16.58186 -16.42423 -15.95736 -15.80508 -15.48337 -15.16240 -15.04529 -14.80232 -14.70892 -14.52495 -14.41173 -14.10736 -13.88876 -13.78864 -13.51242 -13.35274 -13.23132 -13.11954 -12.77791 -12.74782 -12.64313 -12.34507 -12.24115 -12.20288 -12.07874 -11.92819 -11.82222 -11.71485 -11.56616 -11.45151 -10.99064 -10.72918 -10.53993 -9.77255 -9.62370 -9.57059 -9.02504 -7.95149 -5.25027 0.48196 0.54747 1.45438 1.49001 1.57170 1.58498 1.95359 2.55445 2.72161 2.92252 3.37973 3.40920 3.64173 3.73816 3.86462 3.94719 3.99882 4.04930 4.08664 4.16516 4.19269 4.22736 4.29815 4.35181 4.38373 4.45686 4.47114 4.55097 4.63038 4.63552 4.68414 4.69992 4.74966 4.83841 4.86114 4.87850 5.01875 5.08899 5.12765 5.16201 5.18392 5.20913 5.24883 5.37033 5.45923 5.55896 5.63955 5.68130 5.78321 6.16874 6.25301 6.31096 6.75368 7.16491 7.31481 8.05897 8.31322 9.28841 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.002194 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.642966 B =12760.469305 C =13225.079076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.059 0.941 4 C -0.121 4.121 5 C 0.500 3.500 6 O -0.575 6.575 7 N -0.610 5.610 8 C 0.100 3.900 9 C -0.157 4.157 10 C 0.064 3.936 11 O -0.397 6.397 12 C 0.105 3.895 13 H 0.018 0.982 14 C 0.162 3.838 15 N -0.740 5.740 16 C -0.248 4.248 17 H 0.078 0.922 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.095 3.905 25 C -0.082 4.082 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.132 4.132 29 C -0.128 4.128 30 C -0.135 4.135 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.138 0.862 49 H 0.143 0.857 50 H 0.139 0.861 51 H 0.132 0.868 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -25.200 20.501 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 H 0.077 0.923 4 C -0.160 4.160 5 C 0.290 3.710 6 O -0.454 6.454 7 N -0.342 5.342 8 C -0.021 4.021 9 C -0.195 4.195 10 C -0.012 4.012 11 O -0.316 6.316 12 C 0.045 3.955 13 H 0.035 0.965 14 C 0.035 3.965 15 N -0.382 5.382 16 C -0.379 4.379 17 H 0.096 0.904 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.191 1.191 24 C -0.029 4.029 25 C -0.082 4.082 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.150 4.150 29 C -0.146 4.146 30 C -0.154 4.154 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.156 0.844 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.150 0.850 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.097 -24.606 20.231 32.433 hybrid contribution 0.377 1.429 -0.327 1.514 sum -5.720 -23.177 19.904 31.081 Atomic orbital electron populations 1.21880 0.93894 1.02348 1.01859 1.19788 0.96543 0.98170 0.90762 0.92275 1.21816 1.03768 1.00669 0.89789 1.21440 0.78560 0.85308 0.85678 1.90693 1.41732 1.26255 1.86723 1.48085 1.54927 1.25809 1.05405 1.22260 0.93584 0.84428 1.01789 1.22374 0.99218 0.97567 1.00336 1.22410 0.96348 0.89482 0.92978 1.86358 1.42136 1.60289 1.42853 1.21866 0.86587 0.91770 0.95257 0.96451 1.20764 0.91232 0.89415 0.95077 1.42414 1.15078 1.35113 1.45620 1.19693 0.99105 1.06797 1.12320 0.90407 1.25679 0.96065 1.02422 1.03020 1.69861 1.05902 1.39871 1.46562 0.85040 0.76669 0.78798 0.78635 1.21352 1.21941 1.19150 1.22050 0.97470 0.94430 0.88994 1.19833 0.97787 0.94878 0.95733 1.21210 1.00153 0.93746 0.98458 1.21466 0.97465 1.00923 0.94153 1.21465 0.98610 0.94674 1.00210 1.21379 1.00146 0.95605 0.97440 1.21267 0.98656 1.00188 0.95247 0.91174 0.93186 0.92726 0.85658 0.87395 0.87208 0.88706 0.90752 0.86152 0.88954 0.94035 0.94948 0.94895 0.79497 0.94000 0.88174 0.90209 0.84394 0.83876 0.84317 0.84963 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.74 71.98 0.63 -2.18 16 2 C -0.03 -0.64 2.21 -11.54 -0.03 -0.67 16 3 H 0.06 1.45 7.69 -2.39 -0.02 1.43 16 4 C -0.12 -1.92 3.26 29.85 0.10 -1.82 16 5 C 0.50 12.33 7.35 87.66 0.64 12.97 16 6 O -0.57 -19.61 13.39 -3.04 -0.04 -19.65 16 7 N -0.61 -13.63 2.20 -818.77 -1.80 -15.43 16 8 C 0.10 1.31 5.96 86.26 0.51 1.83 16 9 C -0.16 -2.49 5.78 30.18 0.17 -2.32 16 10 C 0.06 1.64 6.37 71.50 0.46 2.09 16 11 O -0.40 -14.61 9.18 -117.77 -1.08 -15.69 16 12 C 0.11 3.96 2.73 31.19 0.09 4.05 16 13 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 14 C 0.16 7.27 5.95 86.38 0.51 7.79 16 15 N -0.74 -41.67 5.49 -343.44 -1.88 -43.55 16 16 C -0.25 -14.82 9.99 84.04 0.84 -13.98 16 17 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16 19 N -0.97 -62.86 13.06 21.66 0.28 -62.58 16 20 Si 0.98 48.27 29.55 68.60 2.03 50.30 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 C 0.10 2.72 4.86 87.24 0.42 3.14 16 25 C -0.08 -1.36 4.78 -19.87 -0.09 -1.45 16 26 C -0.12 -1.49 8.76 22.27 0.20 -1.30 16 27 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 28 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 29 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 30 C -0.14 -2.36 9.67 22.27 0.22 -2.15 16 31 H 0.07 1.05 7.37 -2.39 -0.02 1.03 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.05 1.38 5.95 -2.39 -0.01 1.37 16 34 H 0.13 1.19 7.50 -2.39 -0.02 1.18 16 35 H 0.11 1.44 7.38 -2.39 -0.02 1.43 16 36 H 0.11 0.88 5.87 -2.39 -0.01 0.87 16 37 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.04 1.09 7.39 -2.38 -0.02 1.07 16 42 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.37 22.68 7.53 -92.71 -0.70 21.98 16 45 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 47 H 0.08 2.50 7.28 -2.39 -0.02 2.48 16 48 H 0.14 1.19 7.16 -2.91 -0.02 1.17 16 49 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 50 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 51 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 52 H 0.12 2.04 7.95 -2.91 -0.02 2.02 16 Total: -1.00 -79.88 408.79 3.51 -76.37 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.21 Total: 32.79 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.81 Total: -2.55 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -3.40 Total: -121.57 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.12 Total: -35.34 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -79.88 3.51 -76.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201989664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.881 kcal (2) G-P(sol) polarization free energy of solvation -79.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds