Wall clock time and date at job start Sat Apr 11 2020 08:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47396 * 2 1 4 4 C 1.53004 * 109.46911 * 240.00344 * 2 1 3 5 5 C 1.52997 * 109.47111 * 64.99894 * 4 2 1 6 6 O 1.42896 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.35895 * 117.00476 * 179.97438 * 6 5 4 8 8 C 1.38733 * 120.05556 * 359.73035 * 7 6 5 9 9 C 1.38145 * 119.94414 * 179.73966 * 8 7 6 10 10 C 1.38263 * 120.05525 * 0.51225 * 9 8 7 11 11 C 1.38259 * 120.11090 * 359.76522 * 10 9 8 12 12 C 1.38137 * 120.05698 * 359.97438 * 11 10 9 13 13 C 1.50699 * 109.47291 * 120.00418 * 2 1 3 14 14 O 1.21281 * 120.00022 * 23.40849 * 13 2 1 15 15 N 1.34781 * 119.99800 * 203.40869 * 13 2 1 16 16 C 1.46925 * 120.63182 * 4.76233 * 15 13 2 17 17 C 1.52761 * 109.00987 * 233.58584 * 16 15 13 18 18 C 1.53041 * 109.38316 * 305.58758 * 17 16 15 19 19 N 1.46498 * 109.46190 * 181.26111 * 18 17 16 20 20 C 1.36936 * 119.99869 * 84.93120 * 19 18 17 21 21 H 1.07995 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99586 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99486 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47156 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46790 * 120.00300 * 24 22 20 27 27 H 1.48507 * 109.47036 * 240.00066 * 24 22 20 28 28 C 1.53041 * 109.53580 * 61.24003 * 18 17 16 29 29 C 1.46928 * 120.62712 * 185.04706 * 15 13 2 30 30 H 1.08996 * 109.47540 * 53.91019 * 1 2 3 31 31 H 1.09000 * 109.47053 * 293.90976 * 1 2 3 32 32 H 1.08996 * 109.47242 * 173.91600 * 1 2 3 33 33 H 1.09004 * 109.47130 * 184.99786 * 4 2 1 34 34 H 1.08991 * 109.47244 * 304.99998 * 4 2 1 35 35 H 1.08996 * 109.47226 * 300.00151 * 5 4 2 36 36 H 1.09007 * 109.47231 * 59.99818 * 5 4 2 37 37 H 1.08005 * 120.02926 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.97160 * 180.27652 * 9 8 7 39 39 H 1.08008 * 119.94206 * 179.74530 * 10 9 8 40 40 H 1.08006 * 119.96783 * 179.97438 * 11 10 9 41 41 H 1.08002 * 120.02755 * 179.97438 * 12 11 10 42 42 H 1.08999 * 109.58467 * 353.42111 * 16 15 13 43 43 H 1.09000 * 109.58217 * 113.84709 * 16 15 13 44 44 H 1.08996 * 109.56183 * 185.55608 * 17 16 15 45 45 H 1.08995 * 109.35982 * 65.49875 * 17 16 15 46 46 H 1.09004 * 109.46354 * 301.22201 * 18 17 16 47 47 H 0.97003 * 120.00163 * 264.93258 * 19 18 17 48 48 H 0.96993 * 120.00081 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.49692 * 178.68050 * 28 18 17 50 50 H 1.08997 * 109.52723 * 58.60552 * 28 18 17 51 51 H 1.09002 * 109.58619 * 246.15248 * 29 15 13 52 52 H 1.08996 * 109.58873 * 6.43997 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4953 6 8 2.1118 -0.6042 -3.6621 7 6 1.8346 -0.0301 -4.8623 8 6 1.1136 1.1539 -4.9162 9 6 0.8377 1.7383 -6.1371 10 6 1.2704 1.1387 -7.3054 11 6 1.9842 -0.0443 -7.2547 12 6 2.2673 -0.6299 -6.0360 13 6 2.0323 -0.7105 1.2304 14 8 1.3257 -1.5184 1.7951 15 7 3.2669 -0.4480 1.7032 16 6 4.0945 0.6017 1.0935 17 6 5.4492 0.0081 0.7114 18 6 6.0779 -0.6545 1.9393 19 7 7.3906 -1.1981 1.5822 20 6 8.4968 -0.3916 1.6123 21 1 8.4016 0.6451 1.8996 22 6 9.7406 -0.9066 1.2734 23 7 9.8566 -2.1699 0.9227 24 14 11.2498 0.1935 1.3151 25 1 10.8543 1.5605 1.7394 26 1 12.2371 -0.3571 2.2780 27 1 11.8578 0.2513 -0.0386 28 6 5.1730 -1.7874 2.4291 29 6 3.8130 -1.2105 2.8343 30 1 -0.3634 0.6053 -0.8304 31 1 -0.3633 0.4165 0.9395 32 1 -0.3633 -1.0218 -0.1089 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 0.5488 0.1473 -2.5389 36 1 2.0697 1.0677 -2.4494 37 1 0.7714 1.6204 -4.0041 38 1 0.2802 2.6624 -6.1793 39 1 1.0501 1.5950 -8.2592 40 1 2.3207 -0.5110 -8.1688 41 1 2.8246 -1.5542 -5.9970 42 1 3.6000 0.9845 0.2007 43 1 4.2420 1.4117 1.8078 44 1 6.1054 0.7995 0.3492 45 1 5.3094 -0.7364 -0.0722 46 1 6.1947 0.0851 2.7314 47 1 7.4762 -2.1294 1.3245 48 1 10.7257 -2.5298 0.6863 49 1 5.6326 -2.2741 3.2894 50 1 5.0358 -2.5156 1.6297 51 1 3.9370 -0.5513 3.6934 52 1 3.1316 -2.0214 3.0913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204132188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:10 Heat of formation + Delta-G solvation = -47.129067 kcal Electronic energy + Delta-G solvation = -30381.738501 eV Core-core repulsion = 26346.273962 eV Total energy + Delta-G solvation = -4035.464539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.56453 -40.15616 -37.86326 -37.47038 -35.27720 -34.48586 -32.03776 -31.34434 -30.89358 -30.40458 -29.29273 -28.80851 -25.92553 -24.71512 -23.40137 -23.02309 -22.67488 -22.11898 -21.26642 -20.08981 -18.85399 -18.30574 -17.50628 -17.07044 -16.49403 -16.28977 -16.03178 -15.62576 -15.24123 -14.85858 -14.67269 -14.51150 -14.05461 -13.74844 -13.73659 -13.58996 -13.53048 -13.42261 -13.25506 -12.96014 -12.80381 -12.25348 -12.22149 -12.09690 -11.89940 -11.77786 -11.62549 -11.52258 -11.28129 -11.01215 -10.99090 -10.92460 -10.84715 -10.80509 -10.50349 -10.22643 -9.85446 -9.72325 -9.62599 -9.28753 -8.93978 -8.52732 -8.46252 -7.00702 -5.80252 -3.09621 1.05698 1.18177 2.48095 2.96547 3.10949 3.40345 3.45739 3.48277 3.52282 4.27798 4.47876 4.52879 4.55070 4.59554 4.70064 4.79606 4.82391 4.85364 4.93182 5.00930 5.10316 5.18079 5.21876 5.28750 5.31075 5.36765 5.38095 5.50851 5.53319 5.60872 5.62254 5.63996 5.69928 5.72494 5.87367 5.92867 5.97208 6.02125 6.04892 6.12504 6.20042 6.25506 6.34952 6.35740 6.47905 6.50263 6.58920 6.85777 7.00681 7.17778 7.48107 7.66042 8.19692 8.37855 9.49222 10.06591 10.41122 11.42315 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008103 B = 0.002663 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.573255 B =10511.803649 C =13238.658040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.111 4.111 5 C 0.063 3.937 6 O -0.312 6.312 7 C 0.134 3.866 8 C -0.211 4.211 9 C -0.081 4.081 10 C -0.163 4.163 11 C -0.081 4.081 12 C -0.153 4.153 13 C 0.521 3.479 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.104 3.896 17 C -0.152 4.152 18 C 0.179 3.821 19 N -0.724 5.724 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.139 4.139 29 C 0.116 3.884 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.552 7.988 -10.309 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.114 0.886 4 C -0.148 4.148 5 C -0.012 4.012 6 O -0.225 6.225 7 C 0.088 3.912 8 C -0.230 4.230 9 C -0.100 4.100 10 C -0.181 4.181 11 C -0.099 4.099 12 C -0.172 4.172 13 C 0.308 3.692 14 O -0.424 6.424 15 N -0.337 5.337 16 C -0.019 4.019 17 C -0.193 4.193 18 C 0.069 3.931 19 N -0.364 5.364 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.178 4.178 29 C -0.007 4.007 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.659 7.511 -9.905 24.973 hybrid contribution 1.029 0.574 -0.135 1.186 sum -20.630 8.086 -10.040 24.327 Atomic orbital electron populations 1.21709 0.92441 1.03190 1.02044 1.21244 0.98153 1.00673 0.92838 0.88580 1.21456 1.03227 1.00012 0.90152 1.22852 0.99071 0.96082 0.83231 1.86086 1.74184 1.49919 1.12311 1.19054 0.94452 0.92010 0.85640 1.21283 1.04896 0.97439 0.99349 1.20951 0.98030 0.99064 0.91906 1.21065 1.01641 0.97067 0.98340 1.20989 0.96759 0.95155 0.96989 1.20520 1.04474 1.02185 0.89994 1.20394 0.81135 0.82491 0.85136 1.90669 1.55928 1.35766 1.60016 1.48194 1.14984 1.36800 1.33716 1.21851 0.92561 0.89664 0.97812 1.22611 0.93929 1.01343 1.01410 1.20154 0.85867 0.93481 0.93587 1.42442 1.01353 1.11446 1.81180 1.19262 0.86185 0.93253 1.38380 0.91142 1.24756 0.97688 0.96196 1.02280 1.69668 1.23480 1.12548 1.52251 0.86146 0.83431 0.79561 0.77206 1.20559 1.21875 1.21863 1.22208 0.94261 0.99324 1.02005 1.21620 0.95306 0.96026 0.87730 0.92101 0.91967 0.91341 0.89640 0.89869 0.91540 0.91722 0.85488 0.85883 0.86008 0.85377 0.85065 0.90415 0.91411 0.90587 0.92124 0.93439 0.78250 0.93519 0.90530 0.91841 0.91610 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.20 37.15 0.30 -0.90 16 2 C -0.11 -1.06 1.87 -91.77 -0.17 -1.23 16 3 H 0.10 0.76 6.36 -51.93 -0.33 0.43 16 4 C -0.11 -1.12 4.86 -26.73 -0.13 -1.25 16 5 C 0.06 0.56 4.50 37.16 0.17 0.73 16 6 O -0.31 -3.63 10.14 -19.41 -0.20 -3.82 16 7 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 8 C -0.21 -1.93 9.04 -39.43 -0.36 -2.28 16 9 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 10 C -0.16 -1.29 10.04 -39.56 -0.40 -1.69 16 11 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 12 C -0.15 -1.56 9.99 -39.44 -0.39 -1.96 16 13 C 0.52 7.04 6.82 -10.98 -0.07 6.96 16 14 O -0.55 -9.14 15.63 5.56 0.09 -9.06 16 15 N -0.60 -8.08 2.98 -173.03 -0.52 -8.59 16 16 C 0.10 1.27 6.08 -3.93 -0.02 1.25 16 17 C -0.15 -2.43 5.64 -26.83 -0.15 -2.59 16 18 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 19 N -0.72 -17.52 5.12 -53.38 -0.27 -17.79 16 20 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 29 C 0.12 1.63 6.42 -3.71 -0.02 1.61 16 30 H 0.06 0.39 6.87 -51.93 -0.36 0.04 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.50 6.21 -51.93 -0.32 0.17 16 36 H 0.06 0.50 7.68 -51.92 -0.40 0.10 16 37 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.08 0.77 5.19 -51.93 -0.27 0.50 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 47 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.09 1.28 7.03 -51.93 -0.37 0.92 16 LS Contribution 412.62 15.07 6.22 6.22 Total: -1.00 -32.54 412.62 -10.42 -42.96 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.55 Total: 8.78 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.89 Total: -8.59 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.06 Total: -53.48 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.11 Total: -12.88 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.54 -10.42 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204132188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.165 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds