Wall clock time and date at job start Sat Apr 11 2020 08:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47396 * 2 1 4 4 C 1.53004 * 109.46911 * 240.00344 * 2 1 3 5 5 C 1.52997 * 109.47111 * 64.99894 * 4 2 1 6 6 O 1.42896 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.35895 * 117.00476 * 179.97438 * 6 5 4 8 8 C 1.38733 * 120.05556 * 359.73035 * 7 6 5 9 9 C 1.38145 * 119.94414 * 179.73966 * 8 7 6 10 10 C 1.38263 * 120.05525 * 0.51225 * 9 8 7 11 11 C 1.38259 * 120.11090 * 359.76522 * 10 9 8 12 12 C 1.38137 * 120.05698 * 359.97438 * 11 10 9 13 13 C 1.50699 * 109.47291 * 120.00418 * 2 1 3 14 14 O 1.21281 * 120.00022 * 23.40849 * 13 2 1 15 15 N 1.34781 * 119.99800 * 203.40869 * 13 2 1 16 16 C 1.46925 * 120.63182 * 4.76233 * 15 13 2 17 17 C 1.52761 * 109.00987 * 233.58584 * 16 15 13 18 18 C 1.53041 * 109.38316 * 305.58758 * 17 16 15 19 19 N 1.46498 * 109.46190 * 181.26111 * 18 17 16 20 20 C 1.36936 * 119.99869 * 84.93120 * 19 18 17 21 21 H 1.07995 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99586 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99486 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47156 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46790 * 120.00300 * 24 22 20 27 27 H 1.48507 * 109.47036 * 240.00066 * 24 22 20 28 28 C 1.53041 * 109.53580 * 61.24003 * 18 17 16 29 29 C 1.46928 * 120.62712 * 185.04706 * 15 13 2 30 30 H 1.08996 * 109.47540 * 53.91019 * 1 2 3 31 31 H 1.09000 * 109.47053 * 293.90976 * 1 2 3 32 32 H 1.08996 * 109.47242 * 173.91600 * 1 2 3 33 33 H 1.09004 * 109.47130 * 184.99786 * 4 2 1 34 34 H 1.08991 * 109.47244 * 304.99998 * 4 2 1 35 35 H 1.08996 * 109.47226 * 300.00151 * 5 4 2 36 36 H 1.09007 * 109.47231 * 59.99818 * 5 4 2 37 37 H 1.08005 * 120.02926 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.97160 * 180.27652 * 9 8 7 39 39 H 1.08008 * 119.94206 * 179.74530 * 10 9 8 40 40 H 1.08006 * 119.96783 * 179.97438 * 11 10 9 41 41 H 1.08002 * 120.02755 * 179.97438 * 12 11 10 42 42 H 1.08999 * 109.58467 * 353.42111 * 16 15 13 43 43 H 1.09000 * 109.58217 * 113.84709 * 16 15 13 44 44 H 1.08996 * 109.56183 * 185.55608 * 17 16 15 45 45 H 1.08995 * 109.35982 * 65.49875 * 17 16 15 46 46 H 1.09004 * 109.46354 * 301.22201 * 18 17 16 47 47 H 0.97003 * 120.00163 * 264.93258 * 19 18 17 48 48 H 0.96993 * 120.00081 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.49692 * 178.68050 * 28 18 17 50 50 H 1.08997 * 109.52723 * 58.60552 * 28 18 17 51 51 H 1.09002 * 109.58619 * 246.15248 * 29 15 13 52 52 H 1.08996 * 109.58873 * 6.43997 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4953 6 8 2.1118 -0.6042 -3.6621 7 6 1.8346 -0.0301 -4.8623 8 6 1.1136 1.1539 -4.9162 9 6 0.8377 1.7383 -6.1371 10 6 1.2704 1.1387 -7.3054 11 6 1.9842 -0.0443 -7.2547 12 6 2.2673 -0.6299 -6.0360 13 6 2.0323 -0.7105 1.2304 14 8 1.3257 -1.5184 1.7951 15 7 3.2669 -0.4480 1.7032 16 6 4.0945 0.6017 1.0935 17 6 5.4492 0.0081 0.7114 18 6 6.0779 -0.6545 1.9393 19 7 7.3906 -1.1981 1.5822 20 6 8.4968 -0.3916 1.6123 21 1 8.4016 0.6451 1.8996 22 6 9.7406 -0.9066 1.2734 23 7 9.8566 -2.1699 0.9227 24 14 11.2498 0.1935 1.3151 25 1 10.8543 1.5605 1.7394 26 1 12.2371 -0.3571 2.2780 27 1 11.8578 0.2513 -0.0386 28 6 5.1730 -1.7874 2.4291 29 6 3.8130 -1.2105 2.8343 30 1 -0.3634 0.6053 -0.8304 31 1 -0.3633 0.4165 0.9395 32 1 -0.3633 -1.0218 -0.1089 33 1 3.1263 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 0.5488 0.1473 -2.5389 36 1 2.0697 1.0677 -2.4494 37 1 0.7714 1.6204 -4.0041 38 1 0.2802 2.6624 -6.1793 39 1 1.0501 1.5950 -8.2592 40 1 2.3207 -0.5110 -8.1688 41 1 2.8246 -1.5542 -5.9970 42 1 3.6000 0.9845 0.2007 43 1 4.2420 1.4117 1.8078 44 1 6.1054 0.7995 0.3492 45 1 5.3094 -0.7364 -0.0722 46 1 6.1947 0.0851 2.7314 47 1 7.4762 -2.1294 1.3245 48 1 10.7257 -2.5298 0.6863 49 1 5.6326 -2.2741 3.2894 50 1 5.0358 -2.5156 1.6297 51 1 3.9370 -0.5513 3.6934 52 1 3.1316 -2.0214 3.0913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204132188.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:07 Heat of formation + Delta-G solvation = -65.650927 kcal Electronic energy + Delta-G solvation = -30382.541669 eV Core-core repulsion = 26346.273962 eV Total energy + Delta-G solvation = -4036.267707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -41.54024 -40.96554 -38.92275 -38.42031 -36.21574 -36.07239 -33.78287 -32.16674 -31.92041 -31.15720 -30.94029 -29.53970 -27.07132 -26.03157 -24.55620 -24.35872 -23.49450 -23.06492 -22.14056 -21.37961 -19.84699 -19.24780 -18.97326 -18.47387 -17.23816 -17.09330 -16.77540 -16.69516 -16.57399 -16.24191 -15.55534 -15.48923 -15.37809 -15.18767 -15.03651 -14.80884 -14.37303 -14.33714 -14.16601 -14.01793 -13.74500 -13.47875 -13.24689 -13.15915 -12.93395 -12.87153 -12.65938 -12.62292 -12.45794 -12.30175 -12.16884 -12.11910 -12.07387 -11.95591 -11.70257 -11.66327 -11.55721 -11.31540 -10.95504 -10.68112 -9.92669 -9.68407 -9.14588 -9.00903 -7.93322 -5.22082 0.41951 0.51921 1.47166 1.48226 1.48468 1.58316 1.98805 2.28577 2.56695 2.87672 3.37506 3.41058 3.72038 3.79269 3.83658 3.91364 3.93276 3.99329 4.05917 4.11276 4.16392 4.18110 4.27055 4.29713 4.35597 4.38897 4.44867 4.52148 4.56637 4.62540 4.74296 4.77736 4.82019 4.83762 4.86068 4.89424 4.90210 5.03394 5.07428 5.11265 5.12607 5.28755 5.33746 5.39276 5.49463 5.50763 5.54368 5.62726 5.63102 5.90054 6.28308 6.41011 6.49440 7.12547 7.34227 8.10106 8.32759 9.30657 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.008103 B = 0.002663 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.573255 B =10511.803649 C =13238.658040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.127 0.873 4 C -0.105 4.105 5 C 0.063 3.937 6 O -0.338 6.338 7 C 0.109 3.891 8 C -0.216 4.216 9 C -0.085 4.085 10 C -0.166 4.166 11 C -0.087 4.087 12 C -0.179 4.179 13 C 0.516 3.484 14 O -0.582 6.582 15 N -0.606 5.606 16 C 0.112 3.888 17 C -0.141 4.141 18 C 0.173 3.827 19 N -0.739 5.739 20 C -0.231 4.231 21 H 0.081 0.919 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.297 1.297 27 H -0.296 1.296 28 C -0.128 4.128 29 C 0.122 3.878 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.369 0.631 48 H 0.249 0.751 49 H 0.071 0.929 50 H 0.047 0.953 51 H 0.084 0.916 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 11.420 -10.966 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.144 0.856 4 C -0.143 4.143 5 C -0.011 4.011 6 O -0.253 6.253 7 C 0.064 3.936 8 C -0.235 4.235 9 C -0.103 4.103 10 C -0.184 4.184 11 C -0.105 4.105 12 C -0.198 4.198 13 C 0.305 3.695 14 O -0.462 6.462 15 N -0.338 5.338 16 C -0.010 4.010 17 C -0.182 4.182 18 C 0.065 3.935 19 N -0.378 5.378 20 C -0.363 4.363 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.800 3.200 25 H -0.186 1.186 26 H -0.225 1.225 27 H -0.224 1.224 28 C -0.167 4.167 29 C -0.001 4.001 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.200 0.800 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.487 10.998 -10.554 28.000 hybrid contribution 1.507 -0.520 0.058 1.595 sum -21.980 10.478 -10.496 26.516 Atomic orbital electron populations 1.21715 0.91440 1.02746 1.03221 1.21261 0.98891 1.01435 0.90369 0.85562 1.21350 1.01945 0.99655 0.91318 1.22936 1.00237 0.96218 0.81751 1.86039 1.74933 1.51085 1.13219 1.19309 0.95768 0.93138 0.85366 1.21544 1.04403 0.96790 1.00723 1.21345 0.97639 0.99829 0.91490 1.21439 1.00760 0.96648 0.99584 1.21275 0.96618 0.95542 0.97019 1.20717 1.05482 1.02593 0.90979 1.21092 0.80695 0.81992 0.85700 1.90654 1.56922 1.37377 1.61284 1.48282 1.15218 1.36879 1.33445 1.21888 0.90191 0.89256 0.99671 1.22377 0.96027 1.00465 0.99328 1.20422 0.84120 0.94227 0.94740 1.42688 1.03056 1.10718 1.81337 1.19666 0.86913 0.93730 1.36023 0.90161 1.25564 1.00714 0.97501 1.03404 1.69832 1.23589 1.14447 1.54544 0.85112 0.79726 0.78661 0.76527 1.18586 1.22463 1.22394 1.22057 0.95236 0.98266 1.01130 1.21496 0.93484 0.96421 0.88696 0.89034 0.92175 0.93118 0.91339 0.91659 0.89726 0.89856 0.83597 0.83250 0.83634 0.83567 0.85824 0.87312 0.89285 0.91450 0.93796 0.93109 0.79966 0.94233 0.91076 0.93449 0.89750 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.20 71.98 0.59 -1.44 16 2 C -0.10 -1.69 1.87 -11.54 -0.02 -1.71 16 3 H 0.13 1.42 6.36 -2.39 -0.02 1.41 16 4 C -0.10 -2.01 4.86 30.59 0.15 -1.86 16 5 C 0.06 1.00 4.50 71.98 0.32 1.32 16 6 O -0.34 -7.79 10.14 -92.37 -0.94 -8.73 16 7 C 0.11 2.31 6.69 22.51 0.15 2.46 16 8 C -0.22 -3.47 9.04 22.37 0.20 -3.26 16 9 C -0.09 -1.14 10.04 22.25 0.22 -0.92 16 10 C -0.17 -2.25 10.04 22.28 0.22 -2.03 16 11 C -0.09 -1.38 10.04 22.25 0.22 -1.16 16 12 C -0.18 -3.69 9.99 22.36 0.22 -3.47 16 13 C 0.52 13.22 6.82 87.66 0.60 13.82 16 14 O -0.58 -19.29 15.63 -3.03 -0.05 -19.33 16 15 N -0.61 -15.17 2.98 -819.73 -2.44 -17.61 16 16 C 0.11 2.42 6.08 86.22 0.52 2.95 16 17 C -0.14 -4.39 5.64 30.53 0.17 -4.22 16 18 C 0.17 6.39 2.73 45.02 0.12 6.51 16 19 N -0.74 -36.36 5.12 -322.81 -1.65 -38.01 16 20 C -0.23 -12.44 9.93 84.04 0.83 -11.61 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 23 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 24 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.13 -4.18 5.55 30.67 0.17 -4.01 16 29 C 0.12 3.32 6.42 86.36 0.55 3.88 16 30 H 0.09 0.82 6.87 -2.39 -0.02 0.81 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.96 8.07 -2.39 -0.02 0.94 16 33 H 0.07 1.55 7.79 -2.38 -0.02 1.53 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.02 6.21 -2.39 -0.01 1.00 16 36 H 0.08 1.01 7.68 -2.38 -0.02 0.99 16 37 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 38 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.11 1.72 5.19 -2.39 -0.01 1.71 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 47 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 51 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.08 2.36 7.03 -2.39 -0.02 2.34 16 Total: -1.00 -73.02 412.62 3.15 -69.87 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.19 Total: 34.50 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.73 Total: -8.81 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.81 Total: -115.09 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.98 Total: -28.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.02 3.15 -69.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204132188.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.221 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds