Wall clock time and date at job start Sat Apr 11 2020 08:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 117.00258 * 2 1 4 4 C 1.38729 * 120.05498 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.93826 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.06235 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94812 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.87117 * 2.38905 * 7 6 5 9 9 C 1.55140 * 110.98925 * 238.54556 * 7 6 5 10 10 C 1.54324 * 103.01888 * 206.25481 * 9 7 6 11 11 N 1.47436 * 107.23089 * 22.28261 * 10 9 7 12 12 C 1.46906 * 110.99898 * 123.25894 * 11 10 9 13 13 C 1.52995 * 109.46837 * 69.87309 * 12 11 10 14 14 C 1.50706 * 109.47207 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99388 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00234 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99934 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00224 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47188 * 89.99943 * 18 16 14 20 20 H 1.07994 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.37885 * 120.00063 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99741 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00009 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47413 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47234 * 119.99885 * 23 21 19 26 26 H 1.48507 * 109.47184 * 239.99936 * 23 21 19 27 27 C 1.47851 * 108.57089 * 0.99176 * 11 10 9 28 28 C 1.38271 * 120.10826 * 0.25098 * 6 5 4 29 29 C 1.38148 * 120.05641 * 359.45300 * 28 6 5 30 30 H 1.09001 * 109.46499 * 299.99408 * 1 2 3 31 31 H 1.08998 * 109.47269 * 59.99482 * 1 2 3 32 32 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 33 33 H 1.07993 * 120.03132 * 0.04619 * 4 3 2 34 34 H 1.07999 * 119.96762 * 180.02562 * 5 4 3 35 35 H 1.08995 * 110.70515 * 87.86993 * 9 7 6 36 36 H 1.08998 * 110.85769 * 324.70591 * 9 7 6 37 37 H 1.08998 * 109.88582 * 262.87896 * 10 9 7 38 38 H 1.08996 * 110.01912 * 141.76799 * 10 9 7 39 39 H 1.09003 * 109.46997 * 189.87106 * 12 11 10 40 40 H 1.08999 * 109.47193 * 309.87069 * 12 11 10 41 41 H 1.09004 * 109.47623 * 299.99948 * 13 12 11 42 42 H 1.08999 * 109.47425 * 59.99902 * 13 12 11 43 43 H 1.08999 * 109.47162 * 89.99628 * 17 16 14 44 44 H 1.09003 * 109.46735 * 209.99948 * 17 16 14 45 45 H 1.08995 * 109.46908 * 329.99293 * 17 16 14 46 46 H 1.08998 * 109.47753 * 210.00298 * 18 16 14 47 47 H 1.09009 * 109.46748 * 330.00386 * 18 16 14 48 48 H 0.97002 * 120.00108 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.37354 * 94.73217 * 27 11 10 50 50 H 1.08994 * 110.37029 * 217.07440 * 27 11 10 51 51 H 1.07997 * 119.97217 * 179.70394 * 28 6 5 52 52 H 1.07996 * 120.02687 * 180.29579 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3021 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 1 5.0692 4.9026 -0.0403 9 6 3.5656 5.8554 1.2395 10 6 3.7616 7.3087 0.7588 11 7 3.7144 7.2915 -0.7147 12 6 2.6706 8.1940 -1.2186 13 6 3.0865 9.6449 -0.9681 14 6 2.0160 10.5709 -1.4856 15 8 1.0184 10.1151 -2.0033 16 7 2.1667 11.9053 -1.3722 17 6 3.3715 12.4558 -0.7463 18 6 1.1259 12.8054 -1.8747 19 6 0.1268 13.0789 -0.7800 20 1 0.2547 12.6277 0.1928 21 6 -0.9505 13.9051 -1.0205 22 7 -1.1064 14.4542 -2.2054 23 14 -2.1884 14.2447 0.3365 24 1 -1.7894 13.5123 1.5652 25 1 -2.2263 15.7021 0.6187 26 1 -3.5341 13.7890 -0.0957 27 6 3.4751 5.9027 -1.1619 28 6 1.9212 3.6048 0.0079 29 6 1.2915 2.3751 0.0012 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 4.0209 0.3799 -0.0017 34 1 5.1345 2.5750 -0.0008 35 1 4.2134 5.6398 2.0891 36 1 2.5222 5.6717 1.4958 37 1 4.7287 7.6830 1.0945 38 1 2.9639 7.9413 1.1480 39 1 2.5372 8.0338 -2.2886 40 1 1.7332 7.9902 -0.7011 41 1 3.2199 9.8051 0.1018 42 1 4.0239 9.8487 -1.4856 43 1 4.1348 12.6177 -1.5074 44 1 3.1304 13.4041 -0.2659 45 1 3.7456 11.7552 0.0002 46 1 1.5799 13.7432 -2.1948 47 1 0.6198 12.3394 -2.7203 48 1 -1.8645 15.0352 -2.3747 49 1 2.4108 5.7352 -1.3268 50 1 4.0383 5.6947 -2.0717 51 1 1.3343 4.5114 0.0140 52 1 0.2130 2.3203 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092795390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:28 Heat of formation + Delta-G solvation = -66.679498 kcal Electronic energy + Delta-G solvation = -29613.736829 eV Core-core repulsion = 25577.424520 eV Total energy + Delta-G solvation = -4036.312309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33017 -40.76765 -39.97243 -38.21326 -36.61029 -34.85922 -34.49328 -32.08110 -31.82585 -30.58979 -29.60983 -28.91791 -27.66737 -27.23177 -25.51929 -24.11920 -23.78881 -22.97108 -21.48774 -21.03923 -19.82232 -19.15589 -18.71824 -18.01421 -17.61589 -17.10270 -16.87285 -16.67737 -16.66655 -16.35679 -16.05620 -15.69109 -15.09599 -14.92990 -14.63327 -14.57475 -14.43028 -14.23525 -14.08518 -13.99253 -13.80600 -13.64846 -13.45092 -13.18052 -13.07171 -12.82914 -12.77935 -12.73987 -12.60332 -12.50059 -12.23121 -12.20803 -12.04797 -11.93712 -11.79698 -11.68912 -11.62105 -11.41187 -10.66741 -10.60429 -9.97466 -9.42102 -9.35548 -9.01309 -8.24007 -6.39037 0.37172 0.40274 1.34559 1.36909 1.48794 1.84547 2.28388 2.36531 2.41783 2.72933 3.01105 3.05357 3.66003 3.73770 3.81730 3.88089 3.90709 3.96891 4.10189 4.18713 4.26066 4.33124 4.33750 4.38251 4.42711 4.43365 4.43855 4.61617 4.64187 4.69991 4.73398 4.75288 4.76287 4.87848 4.94396 4.97961 4.99029 5.02884 5.04193 5.07322 5.16222 5.22698 5.27128 5.34689 5.39255 5.55406 5.70793 5.80670 5.83830 5.99520 6.03246 6.04927 6.41632 6.68595 6.79526 7.26736 7.48582 8.83225 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.001889 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.922069 B =14815.545864 C =16049.453550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.072 4.072 6 C -0.112 4.112 7 C -0.042 4.042 8 H 0.109 0.891 9 C -0.129 4.129 10 C 0.034 3.966 11 N -0.526 5.526 12 C 0.077 3.923 13 C -0.112 4.112 14 C 0.493 3.507 15 O -0.603 6.603 16 N -0.611 5.611 17 C 0.079 3.921 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.053 0.947 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.268 1.268 26 H -0.282 1.282 27 C 0.047 3.953 28 C -0.086 4.086 29 C -0.214 4.214 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.024 0.976 47 H -0.004 1.004 48 H 0.267 0.733 49 H 0.037 0.963 50 H 0.085 0.915 51 H 0.118 0.882 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.110 -26.140 8.632 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.063 3.937 4 C -0.178 4.178 5 C -0.090 4.090 6 C -0.113 4.113 7 C -0.061 4.061 8 H 0.127 0.873 9 C -0.168 4.168 10 C -0.094 4.094 11 N -0.250 5.250 12 C -0.052 4.052 13 C -0.152 4.152 14 C 0.282 3.718 15 O -0.485 6.485 16 N -0.342 5.342 17 C -0.063 4.063 18 C 0.135 3.865 19 C -0.580 4.580 20 H 0.071 0.929 21 C -0.194 4.194 22 N -0.569 5.569 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.208 1.208 27 C -0.080 4.080 28 C -0.104 4.104 29 C -0.232 4.232 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.104 0.896 51 H 0.136 0.864 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.052 -26.221 8.067 30.823 hybrid contribution -2.430 0.503 0.393 2.512 sum 11.622 -25.717 8.459 29.462 Atomic orbital electron populations 1.23291 0.76800 1.05478 1.01915 1.86033 1.23126 1.27000 1.88808 1.19285 0.93022 0.84332 0.97109 1.20689 0.91297 0.99521 1.06329 1.21136 1.01014 0.90175 0.96656 1.19696 0.93160 0.95011 1.03434 1.21153 1.00745 0.90039 0.94154 0.87284 1.22874 1.01821 0.93842 0.98239 1.23012 1.02657 0.96913 0.86777 1.63614 1.44572 1.06982 1.09836 1.21778 0.91788 0.91541 1.00115 1.21521 0.97532 0.92462 1.03715 1.21416 0.88074 0.83280 0.78997 1.90628 1.33647 1.76819 1.47400 1.48202 1.21412 1.06053 1.58565 1.21940 0.85499 1.00506 0.98385 1.18762 0.85946 0.87844 0.93908 1.21729 1.09577 1.28396 0.98272 0.92879 1.25904 0.99741 0.95458 0.98339 1.70062 1.31151 1.32513 1.23129 0.85341 0.78133 0.78365 0.78800 1.19082 1.19283 1.20779 1.23174 0.99304 0.86666 0.98898 1.20906 0.94743 0.96989 0.97739 1.21380 1.00757 0.92259 1.08826 0.92088 0.92250 0.86209 0.84015 0.82780 0.88754 0.92266 0.88488 0.93275 0.91838 0.96075 0.87276 0.86192 0.91089 0.91642 0.88660 0.95844 0.98559 0.92391 0.94468 0.89639 0.86421 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -5.98 10.50 -92.47 -0.97 -6.95 16 3 C 0.11 2.01 6.69 22.51 0.15 2.16 16 4 C -0.16 -2.61 9.99 22.37 0.22 -2.38 16 5 C -0.07 -1.04 9.68 22.25 0.22 -0.82 16 6 C -0.11 -1.86 5.00 -19.85 -0.10 -1.96 16 7 C -0.04 -0.64 3.25 -10.16 -0.03 -0.67 16 8 H 0.11 1.33 7.96 -2.39 -0.02 1.31 16 9 C -0.13 -1.99 6.35 31.78 0.20 -1.79 16 10 C 0.03 0.61 6.21 86.65 0.54 1.14 16 11 N -0.53 -11.39 5.16 -885.55 -4.57 -15.96 16 12 C 0.08 2.18 3.83 86.30 0.33 2.51 16 13 C -0.11 -3.16 4.28 29.85 0.13 -3.03 16 14 C 0.49 20.82 7.67 87.66 0.67 21.49 16 15 O -0.60 -31.95 15.56 -3.03 -0.05 -32.00 16 16 N -0.61 -26.36 2.86 -851.13 -2.43 -28.79 16 17 C 0.08 2.34 10.24 127.77 1.31 3.65 16 18 C 0.26 14.19 5.16 85.63 0.44 14.63 16 19 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 21 C 0.00 0.25 5.46 84.66 0.46 0.72 16 22 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 23 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 C 0.05 0.93 6.09 86.77 0.53 1.46 16 28 C -0.09 -1.61 8.28 22.26 0.18 -1.43 16 29 C -0.21 -3.90 9.04 22.37 0.20 -3.70 16 30 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 1.38 7.98 -2.91 -0.02 1.35 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.04 7.08 -2.39 -0.02 1.02 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.00 6.91 -2.39 -0.02 0.98 16 39 H 0.06 2.01 8.03 -2.39 -0.02 1.99 16 40 H 0.02 0.69 7.92 -2.39 -0.02 0.67 16 41 H 0.11 2.59 6.40 -2.38 -0.02 2.57 16 42 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 45 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 46 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 47 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 48 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.04 0.84 6.42 -2.39 -0.02 0.83 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.12 2.29 7.01 -2.91 -0.02 2.27 16 52 H 0.14 2.08 6.30 -2.91 -0.02 2.07 16 Total: -1.00 -77.85 414.96 2.00 -75.85 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.90 Total: 15.30 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.81 Total: 1.81 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -6.71 Total: -101.43 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.02 Total: -38.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.85 2.00 -75.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092795390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.175 kcal (2) G-P(sol) polarization free energy of solvation -77.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds