Wall clock time and date at job start Sat Apr 11 2020 08:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99886 * 2 1 4 4 C 1.50708 * 109.46973 * 269.99740 * 3 2 1 5 5 H 1.08003 * 119.99709 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00107 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00334 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00069 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47351 * 120.00092 * 8 6 4 11 11 H 1.48505 * 109.47438 * 239.99987 * 8 6 4 12 12 C 1.34774 * 119.99704 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99722 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00110 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46908 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47253 * 174.85349 * 15 14 12 17 17 C 1.46904 * 110.99808 * 73.98064 * 16 15 14 18 18 C 1.50705 * 109.47094 * 190.00435 * 17 16 15 19 19 C 1.38290 * 119.96886 * 269.98115 * 18 17 16 20 20 C 1.38241 * 120.10980 * 180.02562 * 19 18 17 21 21 C 1.38171 * 120.05495 * 359.67667 * 20 19 18 22 22 C 1.38712 * 119.94309 * 0.61409 * 21 20 19 23 23 O 1.35895 * 120.05463 * 179.67979 * 22 21 20 24 24 C 1.38121 * 119.97368 * 90.00025 * 18 17 16 25 25 C 1.46889 * 111.00132 * 197.93502 * 16 15 14 26 26 C 1.52999 * 109.47178 * 68.43120 * 25 16 15 27 27 C 1.53004 * 117.49579 * 243.50405 * 26 25 16 28 28 C 1.52999 * 117.50054 * 174.84287 * 26 25 16 29 29 H 1.09004 * 109.47144 * 270.00714 * 1 2 3 30 30 H 1.09007 * 109.46888 * 30.00017 * 1 2 3 31 31 H 1.08995 * 109.47328 * 150.00125 * 1 2 3 32 32 H 1.08990 * 109.47574 * 29.99555 * 3 2 1 33 33 H 1.09003 * 109.46920 * 149.99980 * 3 2 1 34 34 H 0.96998 * 120.00371 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47417 * 59.99454 * 14 12 2 36 36 H 1.09000 * 109.46973 * 299.99239 * 14 12 2 37 37 H 1.08999 * 109.47647 * 54.85096 * 15 14 12 38 38 H 1.09009 * 109.46768 * 294.85149 * 15 14 12 39 39 H 1.08995 * 109.47352 * 70.00453 * 17 16 15 40 40 H 1.09004 * 109.47473 * 310.00099 * 17 16 15 41 41 H 1.08003 * 119.94258 * 359.97438 * 19 18 17 42 42 H 1.07997 * 119.97192 * 179.97438 * 20 19 18 43 43 H 1.08006 * 120.02702 * 180.30060 * 21 20 19 44 44 H 0.96702 * 113.99976 * 269.72987 * 23 22 21 45 45 H 1.07997 * 120.02676 * 359.97438 * 24 18 17 46 46 H 1.09004 * 109.46946 * 188.42646 * 25 16 15 47 47 H 1.08997 * 109.47148 * 308.42691 * 25 16 15 48 48 H 1.08997 * 115.55043 * 29.16475 * 26 25 16 49 49 H 1.08998 * 117.49744 * 359.97438 * 27 26 25 50 50 H 1.09007 * 117.50004 * 145.01705 * 27 26 25 51 51 H 1.08997 * 117.50233 * 214.97219 * 28 26 25 52 52 H 1.08998 * 117.50149 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1269 2.8773 -1.6729 7 7 3.5542 3.6176 -0.6734 8 14 3.4389 3.4161 -3.4340 9 1 2.8618 2.4155 -4.3674 10 1 2.8018 4.7370 -3.6679 11 1 4.9016 3.5239 -3.6671 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6494 -4.9038 0.1248 17 6 0.9704 -5.2457 -1.1323 18 6 0.0409 -6.4091 -0.9009 19 6 0.4995 -7.7032 -1.0662 20 6 -0.3508 -8.7726 -0.8552 21 6 -1.6597 -8.5508 -0.4720 22 6 -2.1238 -7.2535 -0.3115 23 8 -3.4125 -7.0327 0.0590 24 6 -1.2685 -6.1819 -0.5243 25 6 2.5450 -5.9873 0.5508 26 6 2.9922 -5.7418 1.9933 27 6 4.4836 -5.5051 2.2400 28 6 3.8372 -6.8259 2.6652 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6085 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0310 4.4435 -0.8506 35 1 0.7589 -2.5302 -0.8896 36 1 0.7584 -2.5298 0.8903 37 1 3.0654 -3.5270 0.8408 38 1 2.9440 -3.6307 -0.9321 39 1 1.7119 -5.5170 -1.8837 40 1 0.3973 -4.3866 -1.4811 41 1 1.5234 -7.8787 -1.3614 42 1 0.0095 -9.7823 -0.9853 43 1 -2.3223 -9.3867 -0.3026 44 1 -4.0258 -6.9457 -0.6836 45 1 -1.6261 -5.1711 -0.3953 46 1 2.0176 -6.9393 0.4910 47 1 3.4184 -6.0141 -0.1008 48 1 2.2858 -5.1949 2.6179 49 1 5.1461 -5.5247 1.3747 50 1 4.7583 -4.8028 3.0271 51 1 3.6870 -6.9922 3.7319 52 1 4.0742 -7.7143 2.0798 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092796862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:31 Heat of formation + Delta-G solvation = -45.993804 kcal Electronic energy + Delta-G solvation = -30309.704585 eV Core-core repulsion = 26274.289275 eV Total energy + Delta-G solvation = -4035.415310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99251 -40.56611 -39.34093 -37.77918 -36.87823 -36.49900 -34.74661 -33.10189 -31.85553 -30.62828 -29.66800 -28.21385 -27.33826 -26.32410 -24.62684 -23.46873 -23.29189 -22.91011 -21.95520 -21.10223 -19.90527 -18.96100 -18.70261 -17.98993 -17.33414 -17.18383 -16.86340 -16.77502 -16.44379 -16.22756 -16.17994 -15.90245 -15.50028 -15.15292 -14.79572 -14.58533 -14.27695 -14.09586 -13.80706 -13.63123 -13.55365 -13.45884 -13.38198 -13.22412 -13.04488 -12.80523 -12.76656 -12.53417 -12.47306 -12.40369 -12.32907 -12.21111 -12.12259 -11.86457 -11.66936 -11.30605 -11.17491 -10.80407 -10.65856 -10.57629 -9.77731 -9.53126 -9.40590 -9.29482 -8.23004 -6.38115 0.32408 0.44544 1.35461 1.37882 1.49755 1.86565 2.27857 2.40878 2.66280 2.89161 3.06205 3.11977 3.35792 3.72351 3.86385 3.88248 3.97363 4.01977 4.06140 4.12788 4.22602 4.28005 4.34825 4.41087 4.43092 4.47915 4.54834 4.68367 4.70023 4.72876 4.77063 4.78973 4.82200 4.95842 4.97525 5.00794 5.02883 5.05208 5.06615 5.12650 5.23608 5.24821 5.34634 5.50744 5.53575 5.56305 5.65437 5.84757 5.94551 6.02314 6.05752 6.10473 6.69646 6.80794 6.92588 7.27958 7.50276 8.84298 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.002460 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.230008 B =11379.270892 C =12776.098638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.114 4.114 15 C 0.082 3.918 16 N -0.527 5.527 17 C 0.087 3.913 18 C -0.063 4.063 19 C -0.130 4.130 20 C -0.103 4.103 21 C -0.155 4.155 22 C 0.095 3.905 23 O -0.513 6.513 24 C -0.136 4.136 25 C 0.085 3.915 26 C -0.152 4.152 27 C -0.196 4.196 28 C -0.160 4.160 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.022 0.978 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.408 0.592 45 H 0.130 0.870 46 H 0.095 0.905 47 H 0.033 0.967 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -27.918 0.086 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.284 3.716 13 O -0.482 6.482 14 C -0.154 4.154 15 C -0.046 4.046 16 N -0.251 5.251 17 C -0.040 4.040 18 C -0.063 4.063 19 C -0.149 4.149 20 C -0.121 4.121 21 C -0.173 4.173 22 C 0.050 3.950 23 O -0.326 6.326 24 C -0.155 4.155 25 C -0.042 4.042 26 C -0.171 4.171 27 C -0.233 4.233 28 C -0.198 4.198 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.267 0.733 45 H 0.148 0.852 46 H 0.113 0.887 47 H 0.051 0.949 48 H 0.118 0.882 49 H 0.106 0.894 50 H 0.104 0.896 51 H 0.120 0.880 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.710 -27.687 1.049 30.080 hybrid contribution 0.956 1.035 -1.585 2.120 sum -10.754 -26.653 -0.536 28.746 Atomic orbital electron populations 1.21925 0.77863 1.03991 1.02514 1.48199 1.08429 1.06416 1.71265 1.18751 0.91052 0.80533 0.96056 1.21724 1.36671 1.06485 0.92984 0.92836 1.25892 0.94937 0.96461 1.02074 1.70063 1.39017 1.14838 1.33041 0.85346 0.77852 0.78440 0.79027 1.18995 1.19355 1.20805 1.21369 0.87798 0.86680 0.75755 1.90632 1.16701 1.88260 1.52607 1.21536 0.98908 0.88987 1.05974 1.21625 0.94324 0.87923 1.00766 1.61941 1.30437 1.02166 1.30536 1.21173 0.95846 0.96668 0.90324 1.19604 0.93651 0.94384 0.98683 1.21283 1.00470 0.91937 1.01204 1.21260 0.92824 0.99988 0.98028 1.21642 0.97575 0.96558 1.01560 1.18615 0.85423 0.92430 0.98506 1.84783 1.15967 1.94324 1.37565 1.21390 0.93965 0.99533 1.00579 1.21780 0.94474 0.94880 0.93094 1.22240 0.93460 1.04068 0.97298 1.23077 0.95832 1.00815 1.03546 1.23019 1.02638 0.92606 1.01487 0.91317 0.91627 0.88681 0.95978 0.98575 0.92408 0.87275 0.86622 0.91230 0.95568 0.93328 0.89040 0.84951 0.83431 0.84303 0.73275 0.85218 0.88689 0.94910 0.88201 0.89356 0.89558 0.87982 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.68 16 2 N -0.61 -26.40 2.86 -851.12 -2.43 -28.83 16 3 C 0.26 14.23 5.16 85.64 0.44 14.67 16 4 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -57.06 13.29 21.44 0.28 -56.77 16 8 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.49 20.78 7.67 87.66 0.67 21.45 16 13 O -0.60 -31.54 15.50 -3.05 -0.05 -31.59 16 14 C -0.11 -3.20 4.25 29.85 0.13 -3.07 16 15 C 0.08 2.29 4.19 86.30 0.36 2.65 16 16 N -0.53 -11.39 4.42 -900.78 -3.98 -15.37 16 17 C 0.09 1.60 4.96 85.56 0.42 2.02 16 18 C -0.06 -1.06 4.92 -19.88 -0.10 -1.16 16 19 C -0.13 -1.88 7.84 22.28 0.17 -1.71 16 20 C -0.10 -1.30 10.04 22.25 0.22 -1.08 16 21 C -0.15 -2.18 9.99 22.37 0.22 -1.96 16 22 C 0.09 1.57 6.70 22.51 0.15 1.72 16 23 O -0.51 -7.73 13.50 -92.37 -1.25 -8.97 16 24 C -0.14 -2.38 9.64 22.36 0.22 -2.16 16 25 C 0.09 1.69 5.05 86.31 0.44 2.13 16 26 C -0.15 -3.18 4.79 -10.79 -0.05 -3.23 16 27 C -0.20 -4.20 9.99 30.62 0.31 -3.90 16 28 C -0.16 -2.72 10.25 30.62 0.31 -2.40 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 31 H 0.09 2.13 6.44 -2.39 -0.02 2.11 16 32 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.11 2.52 6.14 -2.39 -0.01 2.51 16 36 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 37 H 0.07 2.24 6.63 -2.39 -0.02 2.22 16 38 H 0.03 0.81 8.03 -2.38 -0.02 0.79 16 39 H 0.05 0.87 8.06 -2.39 -0.02 0.85 16 40 H 0.09 1.60 6.55 -2.39 -0.02 1.59 16 41 H 0.13 1.57 7.82 -2.91 -0.02 1.54 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.41 2.14 9.06 -74.06 -0.67 1.47 16 45 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.10 1.67 5.33 -2.38 -0.01 1.65 16 47 H 0.03 0.67 7.83 -2.39 -0.02 0.66 16 48 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.09 1.94 8.03 -2.39 -0.02 1.92 16 50 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 51 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.30 423.55 0.78 -77.52 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.24 Total: 19.63 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.93 Total: -2.94 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.13 Total: -100.97 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.29 Total: -40.57 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.30 0.78 -77.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092796862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.528 kcal (2) G-P(sol) polarization free energy of solvation -78.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds