Wall clock time and date at job start Sat Apr 11 2020 08:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00059 * 2 1 4 4 C 1.38753 * 120.05261 * 0.25035 * 3 2 1 5 5 C 1.38119 * 119.94288 * 180.27781 * 4 3 2 6 6 C 1.38293 * 120.05658 * 359.72365 * 5 4 3 7 7 C 1.38242 * 120.10892 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05552 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02499 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.27338 * 182.08945 * 9 8 7 11 11 C 1.54594 * 110.39549 * 304.23402 * 9 8 7 12 12 C 1.54933 * 102.91997 * 140.91819 * 11 9 8 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 C 1.50703 * 109.47070 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00071 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99863 * 180.02562 * 16 15 14 19 19 C 1.46498 * 119.99930 * 359.97438 * 18 16 15 20 20 C 1.46498 * 119.99718 * 180.02562 * 18 16 15 21 21 C 1.50702 * 109.47327 * 90.00147 * 20 18 16 22 22 H 1.07999 * 119.99735 * 359.97438 * 21 20 18 23 23 C 1.37874 * 120.00090 * 179.97438 * 21 20 18 24 24 N 1.31516 * 119.99950 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47105 * 59.99874 * 25 23 21 27 27 H 1.48497 * 109.47032 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46955 * 299.99989 * 25 23 21 29 29 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 30 30 H 1.09003 * 109.47125 * 60.00201 * 1 2 3 31 31 H 1.09003 * 109.46797 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47130 * 300.00259 * 1 2 3 33 33 H 1.08004 * 120.03314 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.97526 * 179.75094 * 5 4 3 35 35 H 1.08000 * 119.94751 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.97129 * 179.97438 * 7 6 5 37 37 H 1.08999 * 110.72754 * 259.27718 * 11 9 8 38 38 H 1.08999 * 110.72080 * 22.56098 * 11 9 8 39 39 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 40 40 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 41 41 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 42 42 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 43 43 H 1.09000 * 109.46888 * 299.99991 * 15 14 13 44 44 H 1.08995 * 109.46911 * 59.99977 * 15 14 13 45 45 H 1.08999 * 109.46863 * 90.00202 * 19 18 16 46 46 H 1.09001 * 109.47061 * 209.99691 * 19 18 16 47 47 H 1.09002 * 109.47450 * 330.00263 * 19 18 16 48 48 H 1.09000 * 109.46885 * 209.99673 * 20 18 16 49 49 H 1.09000 * 109.47306 * 329.99711 * 20 18 16 50 50 H 0.96997 * 120.00111 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.91668 * 215.45268 * 29 13 12 52 52 H 1.09002 * 109.91761 * 94.35443 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6047 -0.0006 6 6 3.3018 3.6758 -0.0058 7 6 4.0559 2.5172 -0.0058 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0223 -0.0006 10 1 3.6036 -0.8521 -0.0329 11 6 5.2255 0.0129 -1.2029 12 6 6.5138 -0.6034 -0.6023 13 7 6.5572 -0.0363 0.7729 14 6 7.4064 -0.8478 1.6552 15 6 8.7793 -1.0388 1.0074 16 6 9.6506 -1.8708 1.9128 17 8 9.2161 -2.2718 2.9717 18 7 10.9126 -2.1691 1.5458 19 6 11.4372 -1.6851 0.2664 20 6 11.7594 -2.9783 2.4257 21 6 11.5849 -4.4368 2.0888 22 1 10.9103 -4.7314 1.2986 23 6 12.2864 -5.3949 2.7895 24 7 13.1082 -5.0359 3.7515 25 14 12.0696 -7.2027 2.3723 26 1 12.4597 -7.4348 0.9583 27 1 12.9290 -8.0228 3.2634 28 1 10.6481 -7.5877 2.5631 29 6 5.1560 -0.0284 1.2463 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2127 2.3204 0.0098 34 1 1.3338 4.5114 -0.0006 35 1 3.7922 4.6381 -0.0100 36 1 5.1343 2.5753 -0.0104 37 1 4.8378 -0.6119 -2.0075 38 1 5.4115 1.0271 -1.5563 39 1 6.4393 -1.6902 -0.5653 40 1 7.3898 -0.2960 -1.1736 41 1 7.5239 -0.3411 2.6131 42 1 6.9408 -1.8206 1.8135 43 1 8.6616 -1.5456 0.0495 44 1 9.2448 -0.0661 0.8490 45 1 11.9034 -0.7104 0.4103 46 1 12.1776 -2.3896 -0.1125 47 1 10.6209 -1.5951 -0.4504 48 1 12.8028 -2.6956 2.2864 49 1 11.4723 -2.8082 3.4634 50 1 13.6020 -5.7099 4.2441 51 1 4.9792 0.8490 1.8684 52 1 4.9514 -0.9348 1.8161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092797501.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:37 Heat of formation + Delta-G solvation = -64.427325 kcal Electronic energy + Delta-G solvation = -29995.165074 eV Core-core repulsion = 25958.950427 eV Total energy + Delta-G solvation = -4036.214647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44731 -40.75523 -39.68391 -38.15192 -36.61928 -35.05660 -34.65892 -32.16503 -31.00242 -30.73142 -29.63541 -28.77073 -27.93562 -27.26315 -25.57937 -23.95921 -23.65723 -22.92034 -21.64051 -20.96502 -19.80882 -18.97746 -18.70673 -18.00784 -17.49445 -17.08745 -16.92881 -16.66118 -16.61339 -16.26561 -16.13193 -15.66186 -15.31889 -15.24981 -14.74386 -14.54194 -14.25607 -14.22088 -13.94862 -13.77065 -13.59512 -13.47560 -13.39108 -13.15650 -13.02279 -12.79377 -12.76339 -12.58815 -12.49983 -12.43069 -12.24855 -12.21641 -12.19121 -11.96622 -11.95459 -11.72309 -11.55559 -11.39600 -10.65282 -10.60342 -9.72435 -9.45271 -9.40300 -9.04708 -8.23127 -6.38314 0.40763 0.54019 1.35135 1.39694 1.47036 1.84282 2.28768 2.41345 2.43079 2.82497 3.03992 3.06343 3.61280 3.69865 3.75821 3.87035 4.00541 4.09001 4.14230 4.18866 4.28472 4.36892 4.37739 4.38688 4.41553 4.49634 4.52882 4.61982 4.64863 4.72216 4.73145 4.74966 4.84678 4.87928 4.95556 4.97369 4.99073 5.02385 5.05931 5.12434 5.18303 5.23163 5.26737 5.43732 5.55424 5.57933 5.68009 5.84066 5.90602 5.92370 5.98381 6.05391 6.49161 6.68691 6.79412 7.27237 7.48643 8.83689 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.001878 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.659924 B =14904.007828 C =15624.768574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.215 4.215 5 C -0.088 4.088 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.117 4.117 9 C -0.047 4.047 10 H 0.077 0.923 11 C -0.106 4.106 12 C 0.025 3.975 13 N -0.510 5.510 14 C 0.072 3.928 15 C -0.116 4.116 16 C 0.493 3.507 17 O -0.603 6.603 18 N -0.611 5.611 19 C 0.078 3.922 20 C 0.258 3.742 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.005 3.995 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.279 1.279 29 C 0.046 3.954 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.112 0.888 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.024 0.976 49 H -0.004 1.004 50 H 0.267 0.733 51 H 0.078 0.922 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.519 18.483 -15.404 34.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.065 3.935 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.066 4.066 10 H 0.096 0.904 11 C -0.143 4.143 12 C -0.102 4.102 13 N -0.234 5.234 14 C -0.057 4.057 15 C -0.156 4.156 16 C 0.282 3.718 17 O -0.485 6.485 18 N -0.342 5.342 19 C -0.064 4.064 20 C 0.136 3.864 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.194 4.194 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.183 1.183 27 H -0.203 1.203 28 H -0.204 1.204 29 C -0.082 4.082 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.130 0.870 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.114 0.886 48 H 0.042 0.958 49 H 0.014 0.986 50 H 0.076 0.924 51 H 0.096 0.904 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -24.275 18.537 -14.734 33.912 hybrid contribution -0.342 -1.977 0.672 2.116 sum -24.618 16.560 -14.062 32.833 Atomic orbital electron populations 1.23283 0.76808 1.05196 1.02131 1.86043 1.23102 1.27170 1.88806 1.19091 0.92088 0.84844 0.97439 1.21465 1.00881 0.92148 1.08829 1.21272 0.94940 0.97589 0.96817 1.21361 0.94233 0.98965 1.03404 1.21074 1.00786 0.90901 0.96834 1.19203 0.90304 0.95574 1.06714 1.20734 0.95382 0.95477 0.95000 0.90440 1.22596 0.93042 1.02444 0.96265 1.23479 0.99863 0.97271 0.89596 1.64941 1.07734 1.48183 1.02512 1.21821 0.92357 0.95130 0.96368 1.21608 0.94104 1.01311 0.98564 1.21387 0.82466 0.80735 0.87174 1.90635 1.73782 1.56573 1.27480 1.48204 1.13195 1.51290 1.21552 1.21948 1.00842 0.99739 0.83831 1.18753 0.89077 0.89493 0.89072 1.21670 1.25212 0.92537 1.18743 0.92886 1.25899 0.94656 1.04239 0.94603 1.70048 1.28083 1.35716 1.22947 0.85455 0.77899 0.78476 0.78902 1.18291 1.20271 1.20440 1.22938 0.87536 1.00828 0.96905 0.91584 0.86987 0.91948 0.83857 0.83595 0.84086 0.84519 0.90010 0.89582 0.94193 0.87739 0.91576 0.96168 0.86986 0.85880 0.91032 0.91647 0.88593 0.95802 0.98612 0.92384 0.90392 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.31 9.29 -92.47 -0.86 -7.17 16 3 C 0.11 2.09 6.66 22.50 0.15 2.24 16 4 C -0.21 -3.18 9.04 22.36 0.20 -2.98 16 5 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 6 C -0.16 -2.31 10.04 22.28 0.22 -2.08 16 7 C -0.08 -1.33 8.18 22.25 0.18 -1.15 16 8 C -0.12 -2.27 4.73 -19.77 -0.09 -2.36 16 9 C -0.05 -0.94 3.16 -10.66 -0.03 -0.97 16 10 H 0.08 1.72 7.06 -2.38 -0.02 1.70 16 11 C -0.11 -1.77 6.49 31.80 0.21 -1.57 16 12 C 0.03 0.48 5.12 86.59 0.44 0.92 16 13 N -0.51 -11.86 5.40 -882.22 -4.77 -16.62 16 14 C 0.07 2.14 4.32 86.30 0.37 2.51 16 15 C -0.12 -3.28 3.92 29.85 0.12 -3.16 16 16 C 0.49 21.00 7.67 87.66 0.67 21.68 16 17 O -0.60 -32.37 15.56 -3.03 -0.05 -32.42 16 18 N -0.61 -26.46 2.86 -851.13 -2.43 -28.89 16 19 C 0.08 2.32 10.24 127.77 1.31 3.63 16 20 C 0.26 14.29 5.16 85.63 0.44 14.73 16 21 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 22 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 23 C 0.00 0.29 5.46 84.65 0.46 0.75 16 24 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 25 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 29 C 0.05 1.07 6.14 86.44 0.53 1.60 16 30 H 0.07 0.50 7.67 -2.39 -0.02 0.48 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.52 7.65 -2.39 -0.02 0.51 16 33 H 0.14 1.46 6.30 -2.91 -0.02 1.44 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.14 2.24 7.69 -2.91 -0.02 2.21 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.33 6.85 -2.39 -0.02 1.31 16 39 H 0.04 0.84 8.00 -2.39 -0.02 0.82 16 40 H 0.10 1.60 7.69 -2.38 -0.02 1.58 16 41 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 42 H 0.02 0.69 7.77 -2.38 -0.02 0.67 16 43 H 0.11 2.63 6.07 -2.39 -0.01 2.61 16 44 H 0.12 2.82 8.11 -2.39 -0.02 2.81 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 48 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 49 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 50 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 51 H 0.08 1.84 7.35 -2.39 -0.02 1.82 16 52 H 0.03 0.86 7.57 -2.39 -0.02 0.84 16 Total: -1.00 -78.76 413.39 1.86 -76.90 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.90 Total: 15.06 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.76 Total: 2.41 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -6.91 Total: -102.42 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.91 Total: -39.59 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -78.76 1.86 -76.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092797501.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.469 kcal (2) G-P(sol) polarization free energy of solvation -78.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds