Wall clock time and date at job start Sat Apr 11 2020 08:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99931 * 2 1 4 4 C 1.50701 * 109.46721 * 293.94639 * 3 2 1 5 5 O 1.21283 * 120.00270 * 354.09923 * 4 3 2 6 6 N 1.34775 * 119.99782 * 174.09339 * 4 3 2 7 7 C 1.46505 * 120.00278 * 185.22481 * 6 4 3 8 8 C 1.50697 * 109.47192 * 89.99817 * 7 6 4 9 9 H 1.08005 * 120.00007 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00256 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00564 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99754 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46992 * 89.99881 * 12 10 8 14 14 H 1.48501 * 109.47119 * 210.00036 * 12 10 8 15 15 H 1.48496 * 109.47009 * 329.99887 * 12 10 8 16 16 C 1.39925 * 120.00424 * 5.22530 * 6 4 3 17 17 C 1.38871 * 120.06746 * 288.92115 * 16 6 4 18 18 C 1.38119 * 119.92822 * 179.78546 * 17 16 6 19 19 C 1.38287 * 120.06725 * 0.48767 * 18 17 16 20 20 C 1.38282 * 120.14227 * 359.74575 * 19 18 17 21 21 C 1.38108 * 120.07149 * 0.02562 * 20 19 18 22 22 C 1.46906 * 110.99432 * 123.94973 * 2 1 3 23 23 C 1.52992 * 109.47254 * 76.63315 * 22 2 1 24 24 O 1.42900 * 110.43649 * 54.83637 * 23 22 2 25 25 C 1.54885 * 110.59884 * 177.45380 * 23 22 2 26 26 C 1.54890 * 102.75236 * 156.67653 * 25 23 22 27 27 C 1.54266 * 104.19364 * 322.05831 * 26 25 23 28 28 C 1.53872 * 106.59927 * 23.60772 * 27 26 25 29 29 H 1.08997 * 109.47025 * 285.87013 * 1 2 3 30 30 H 1.09002 * 109.46677 * 45.87160 * 1 2 3 31 31 H 1.08999 * 109.47164 * 165.87077 * 1 2 3 32 32 H 1.08998 * 109.47911 * 53.94954 * 3 2 1 33 33 H 1.09004 * 109.47146 * 173.95410 * 3 2 1 34 34 H 1.08999 * 109.47388 * 210.00644 * 7 6 4 35 35 H 1.09004 * 109.46578 * 330.00317 * 7 6 4 36 36 H 0.96990 * 120.00205 * 179.97438 * 11 10 8 37 37 H 1.07993 * 120.04056 * 0.02562 * 17 16 6 38 38 H 1.08003 * 119.96719 * 180.22869 * 18 17 16 39 39 H 1.07999 * 119.92584 * 179.71982 * 19 18 17 40 40 H 1.07996 * 119.96533 * 180.02562 * 20 19 18 41 41 H 1.07999 * 120.03629 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47055 * 316.62843 * 22 2 1 43 43 H 1.09008 * 109.46730 * 196.63400 * 22 2 1 44 44 H 0.96701 * 114.00273 * 52.74777 * 24 23 22 45 45 H 1.09003 * 110.75813 * 274.98650 * 25 23 22 46 46 H 1.09000 * 110.75707 * 38.35756 * 25 23 22 47 47 H 1.08996 * 110.48977 * 203.38038 * 26 25 23 48 48 H 1.08998 * 110.48555 * 80.72954 * 26 25 23 49 49 H 1.09003 * 110.03503 * 264.32711 * 27 26 25 50 50 H 1.09002 * 110.03652 * 142.89233 * 27 26 25 51 51 H 1.09007 * 110.03548 * 240.71554 * 28 27 26 52 52 H 1.09003 * 110.03373 * 119.28779 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0469 -1.2986 5 8 1.1000 1.4145 -2.1832 6 7 1.9132 3.3540 -1.4768 7 6 1.4633 4.0388 -2.6913 8 6 0.0915 4.6189 -2.4620 9 1 -0.3963 4.4907 -1.5070 10 6 -0.5409 5.3133 -3.4714 11 7 -1.7383 5.8191 -3.2715 12 14 0.3025 5.5344 -5.1235 13 1 -0.0540 4.4029 -6.0166 14 1 -0.1422 6.8104 -5.7394 15 1 1.7742 5.5659 -4.9276 16 6 2.6296 4.0571 -0.5020 17 6 2.0346 4.3596 0.7158 18 6 2.7459 5.0499 1.6777 19 6 4.0458 5.4484 1.4253 20 6 4.6395 5.1529 0.2119 21 6 3.9352 4.4589 -0.7523 22 6 1.9954 -0.7660 1.1377 23 6 1.8668 -2.2627 0.8481 24 8 2.5032 -2.5880 -0.3893 25 6 2.4730 -3.0956 2.0047 26 6 1.7463 -4.4562 1.8637 27 6 0.3057 -4.0759 1.4638 28 6 0.3823 -2.6813 0.8181 29 1 -0.3633 0.2810 0.9885 30 1 -0.3633 0.7156 -0.7377 31 1 -0.3633 -0.9966 -0.2509 32 1 1.5612 1.9274 0.8308 33 1 3.0798 1.3444 0.1082 34 1 2.1605 4.8401 -2.9360 35 1 1.4237 3.3272 -3.5161 36 1 -2.1830 6.3079 -3.9815 37 1 1.0181 4.0522 0.9120 38 1 2.2850 5.2823 2.6264 39 1 4.5984 5.9920 2.1773 40 1 5.6550 5.4652 0.0179 41 1 4.3993 4.2287 -1.7000 42 1 1.4281 -0.5194 2.0353 43 1 3.0450 -0.5143 1.2907 44 1 3.4185 -2.2824 -0.4532 45 1 3.5481 -3.2164 1.8717 46 1 2.2510 -2.6372 2.9684 47 1 1.7500 -4.9910 2.8134 48 1 2.2122 -5.0584 1.0837 49 1 -0.3310 -4.0434 2.3479 50 1 -0.0860 -4.7980 0.7474 51 1 -0.2172 -1.9720 1.3889 52 1 0.0278 -2.7266 -0.2116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152165606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:34 Heat of formation + Delta-G solvation = -37.717018 kcal Electronic energy + Delta-G solvation = -31599.237881 eV Core-core repulsion = 27564.181479 eV Total energy + Delta-G solvation = -4035.056402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.19550 -39.52764 -38.23749 -36.19157 -34.82906 -34.69470 -32.63201 -30.82267 -30.02833 -29.52126 -29.30315 -28.21386 -27.02047 -25.84983 -22.95378 -22.53893 -22.16985 -21.33009 -20.87929 -20.01095 -19.01332 -17.25110 -16.95953 -16.56502 -16.26501 -15.94104 -15.75336 -15.48520 -15.27605 -14.84891 -14.46366 -14.29395 -14.09888 -13.94604 -13.74162 -13.35444 -13.22219 -12.93828 -12.76487 -12.54855 -12.45806 -12.32894 -11.91919 -11.83558 -11.75737 -11.70050 -11.44784 -11.35757 -11.27824 -10.99784 -10.87676 -10.72282 -10.61535 -10.56964 -10.54702 -10.20248 -9.89062 -9.58862 -9.28831 -8.77608 -8.64718 -8.57362 -8.12909 -7.74969 -6.11411 -4.10561 1.48046 1.56595 3.22352 3.28086 3.33619 3.35999 3.46187 3.92563 3.99770 4.31453 4.37728 4.40130 4.48228 4.69595 4.90511 5.02762 5.07923 5.09841 5.11929 5.21985 5.23420 5.27555 5.38356 5.40703 5.43267 5.47714 5.50943 5.54648 5.60814 5.69747 5.72327 5.74594 5.77141 5.83112 5.88102 5.96516 6.01425 6.11087 6.18337 6.23634 6.40719 6.50870 6.64420 6.65523 6.73281 6.89620 7.01062 7.05861 7.13753 7.32034 7.56081 7.79540 8.21248 8.42479 8.86832 8.92275 9.48210 11.01769 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003281 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.180534 B = 8531.293108 C =10189.373685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.510 5.510 3 C 0.037 3.963 4 C 0.518 3.482 5 O -0.506 6.506 6 N -0.562 5.562 7 C 0.219 3.781 8 C -0.529 4.529 9 H 0.074 0.926 10 C 0.075 3.925 11 N -0.896 5.896 12 Si 0.874 3.126 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.266 1.266 16 C 0.161 3.839 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.126 4.126 22 C 0.031 3.969 23 C 0.139 3.861 24 O -0.536 6.536 25 C -0.149 4.149 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.115 4.115 29 H 0.018 0.982 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.265 0.735 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.371 0.629 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.075 0.925 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.351 -12.194 14.822 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.233 5.233 3 C -0.094 4.094 4 C 0.305 3.695 5 O -0.380 6.380 6 N -0.291 5.291 7 C 0.100 3.900 8 C -0.567 4.567 9 H 0.092 0.908 10 C -0.128 4.128 11 N -0.534 5.534 12 Si 0.701 3.299 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.069 3.931 17 C -0.137 4.137 18 C -0.129 4.129 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.098 4.098 23 C 0.097 3.903 24 O -0.341 6.341 25 C -0.187 4.187 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.218 0.782 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.429 -12.952 13.625 22.001 hybrid contribution 0.489 1.198 0.058 1.295 sum 11.919 -11.754 13.683 21.620 Atomic orbital electron populations 1.22864 0.86355 1.04420 0.99987 1.61497 1.08921 1.11357 1.41537 1.22091 1.01269 0.89893 0.96143 1.20196 0.79060 0.81218 0.88998 1.90684 1.40764 1.63135 1.43370 1.45622 1.53977 1.08651 1.20895 1.19768 0.95899 0.92185 0.82148 1.21245 0.99787 1.34264 1.01428 0.90784 1.24813 0.94659 0.94905 0.98413 1.69882 1.13523 1.36372 1.33621 0.86873 0.80347 0.78023 0.84648 1.19749 1.20992 1.19044 1.17705 0.90429 0.95650 0.89301 1.21419 0.99643 0.98826 0.93796 1.21005 0.94574 0.98343 0.99014 1.21079 0.95556 1.01037 0.97310 1.20959 0.99733 0.98725 0.93581 1.21326 0.93515 0.99837 0.99894 1.22873 1.00374 0.94453 0.92068 1.21900 0.93279 0.90981 0.84123 1.86573 1.30327 1.81073 1.36110 1.23132 1.00030 0.96659 0.98867 1.22261 0.95558 0.96775 1.00931 1.22168 0.96920 0.97083 1.00139 1.22397 0.94340 0.96227 1.02232 0.96338 0.89788 0.90131 0.92244 0.88703 0.95126 0.93993 0.92503 0.85843 0.86068 0.86318 0.86072 0.85890 0.93729 0.90840 0.78192 0.91239 0.90873 0.92012 0.91339 0.92046 0.91777 0.90646 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 7.99 60.07 0.48 0.65 16 2 N -0.51 -7.53 4.18 -244.36 -1.02 -8.55 16 3 C 0.04 0.57 4.18 -4.98 -0.02 0.55 16 4 C 0.52 10.61 7.03 -10.99 -0.08 10.53 16 5 O -0.51 -12.32 14.33 5.56 0.08 -12.24 16 6 N -0.56 -11.75 2.49 -114.73 -0.29 -12.04 16 7 C 0.22 5.41 4.23 -5.19 -0.02 5.39 16 8 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 9 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 10 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 12 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 16 C 0.16 2.81 4.45 -83.69 -0.37 2.44 16 17 C -0.12 -1.86 8.35 -39.39 -0.33 -2.19 16 18 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 19 C -0.13 -1.53 10.04 -39.55 -0.40 -1.93 16 20 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 21 C -0.13 -1.90 9.81 -39.39 -0.39 -2.28 16 22 C 0.03 0.34 4.32 -3.82 -0.02 0.32 16 23 C 0.14 1.47 0.97 -88.97 -0.09 1.38 16 24 O -0.54 -6.64 12.87 -35.23 -0.45 -7.09 16 25 C -0.15 -1.23 6.05 -24.74 -0.15 -1.38 16 26 C -0.12 -0.99 6.81 -25.07 -0.17 -1.16 16 27 C -0.13 -1.15 6.80 -25.61 -0.17 -1.32 16 28 C -0.11 -1.25 4.22 -25.61 -0.11 -1.36 16 29 H 0.02 0.25 7.82 -51.93 -0.41 -0.15 16 30 H 0.08 1.63 5.99 -51.93 -0.31 1.32 16 31 H 0.08 1.18 4.76 -51.93 -0.25 0.93 16 32 H 0.06 0.87 6.48 -51.93 -0.34 0.53 16 33 H 0.09 1.28 7.82 -51.93 -0.41 0.87 16 34 H 0.03 0.74 7.00 -51.93 -0.36 0.37 16 35 H 0.04 1.10 6.78 -51.93 -0.35 0.74 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.12 2.04 7.76 -52.49 -0.41 1.64 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.04 0.46 7.67 -51.93 -0.40 0.06 16 43 H 0.07 0.70 7.72 -51.92 -0.40 0.30 16 44 H 0.37 3.51 9.03 45.56 0.41 3.92 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.79 6.48 -51.92 -0.34 0.45 16 52 H 0.08 1.07 7.01 -51.93 -0.36 0.71 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -34.30 406.46 -10.25 -44.55 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.73 Total: 6.37 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.07 Total: -7.36 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.53 Total: -47.37 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.37 Total: -19.33 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.30 -10.25 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152165606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.829 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds