Wall clock time and date at job start Sat Apr 11 2020 08:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46894 * 110.99931 * 2 1 4 4 C 1.50701 * 109.46721 * 293.94639 * 3 2 1 5 5 O 1.21283 * 120.00270 * 354.09923 * 4 3 2 6 6 N 1.34775 * 119.99782 * 174.09339 * 4 3 2 7 7 C 1.46505 * 120.00278 * 185.22481 * 6 4 3 8 8 C 1.50697 * 109.47192 * 89.99817 * 7 6 4 9 9 H 1.08005 * 120.00007 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00256 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00564 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99754 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46992 * 89.99881 * 12 10 8 14 14 H 1.48501 * 109.47119 * 210.00036 * 12 10 8 15 15 H 1.48496 * 109.47009 * 329.99887 * 12 10 8 16 16 C 1.39925 * 120.00424 * 5.22530 * 6 4 3 17 17 C 1.38871 * 120.06746 * 288.92115 * 16 6 4 18 18 C 1.38119 * 119.92822 * 179.78546 * 17 16 6 19 19 C 1.38287 * 120.06725 * 0.48767 * 18 17 16 20 20 C 1.38282 * 120.14227 * 359.74575 * 19 18 17 21 21 C 1.38108 * 120.07149 * 0.02562 * 20 19 18 22 22 C 1.46906 * 110.99432 * 123.94973 * 2 1 3 23 23 C 1.52992 * 109.47254 * 76.63315 * 22 2 1 24 24 O 1.42900 * 110.43649 * 54.83637 * 23 22 2 25 25 C 1.54885 * 110.59884 * 177.45380 * 23 22 2 26 26 C 1.54890 * 102.75236 * 156.67653 * 25 23 22 27 27 C 1.54266 * 104.19364 * 322.05831 * 26 25 23 28 28 C 1.53872 * 106.59927 * 23.60772 * 27 26 25 29 29 H 1.08997 * 109.47025 * 285.87013 * 1 2 3 30 30 H 1.09002 * 109.46677 * 45.87160 * 1 2 3 31 31 H 1.08999 * 109.47164 * 165.87077 * 1 2 3 32 32 H 1.08998 * 109.47911 * 53.94954 * 3 2 1 33 33 H 1.09004 * 109.47146 * 173.95410 * 3 2 1 34 34 H 1.08999 * 109.47388 * 210.00644 * 7 6 4 35 35 H 1.09004 * 109.46578 * 330.00317 * 7 6 4 36 36 H 0.96990 * 120.00205 * 179.97438 * 11 10 8 37 37 H 1.07993 * 120.04056 * 0.02562 * 17 16 6 38 38 H 1.08003 * 119.96719 * 180.22869 * 18 17 16 39 39 H 1.07999 * 119.92584 * 179.71982 * 19 18 17 40 40 H 1.07996 * 119.96533 * 180.02562 * 20 19 18 41 41 H 1.07999 * 120.03629 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47055 * 316.62843 * 22 2 1 43 43 H 1.09008 * 109.46730 * 196.63400 * 22 2 1 44 44 H 0.96701 * 114.00273 * 52.74777 * 24 23 22 45 45 H 1.09003 * 110.75813 * 274.98650 * 25 23 22 46 46 H 1.09000 * 110.75707 * 38.35756 * 25 23 22 47 47 H 1.08996 * 110.48977 * 203.38038 * 26 25 23 48 48 H 1.08998 * 110.48555 * 80.72954 * 26 25 23 49 49 H 1.09003 * 110.03503 * 264.32711 * 27 26 25 50 50 H 1.09002 * 110.03652 * 142.89233 * 27 26 25 51 51 H 1.09007 * 110.03548 * 240.71554 * 28 27 26 52 52 H 1.09003 * 110.03373 * 119.28779 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0469 -1.2986 5 8 1.1000 1.4145 -2.1832 6 7 1.9132 3.3540 -1.4768 7 6 1.4633 4.0388 -2.6913 8 6 0.0915 4.6189 -2.4620 9 1 -0.3963 4.4907 -1.5070 10 6 -0.5409 5.3133 -3.4714 11 7 -1.7383 5.8191 -3.2715 12 14 0.3025 5.5344 -5.1235 13 1 -0.0540 4.4029 -6.0166 14 1 -0.1422 6.8104 -5.7394 15 1 1.7742 5.5659 -4.9276 16 6 2.6296 4.0571 -0.5020 17 6 2.0346 4.3596 0.7158 18 6 2.7459 5.0499 1.6777 19 6 4.0458 5.4484 1.4253 20 6 4.6395 5.1529 0.2119 21 6 3.9352 4.4589 -0.7523 22 6 1.9954 -0.7660 1.1377 23 6 1.8668 -2.2627 0.8481 24 8 2.5032 -2.5880 -0.3893 25 6 2.4730 -3.0956 2.0047 26 6 1.7463 -4.4562 1.8637 27 6 0.3057 -4.0759 1.4638 28 6 0.3823 -2.6813 0.8181 29 1 -0.3633 0.2810 0.9885 30 1 -0.3633 0.7156 -0.7377 31 1 -0.3633 -0.9966 -0.2509 32 1 1.5612 1.9274 0.8308 33 1 3.0798 1.3444 0.1082 34 1 2.1605 4.8401 -2.9360 35 1 1.4237 3.3272 -3.5161 36 1 -2.1830 6.3079 -3.9815 37 1 1.0181 4.0522 0.9120 38 1 2.2850 5.2823 2.6264 39 1 4.5984 5.9920 2.1773 40 1 5.6550 5.4652 0.0179 41 1 4.3993 4.2287 -1.7000 42 1 1.4281 -0.5194 2.0353 43 1 3.0450 -0.5143 1.2907 44 1 3.4185 -2.2824 -0.4532 45 1 3.5481 -3.2164 1.8717 46 1 2.2510 -2.6372 2.9684 47 1 1.7500 -4.9910 2.8134 48 1 2.2122 -5.0584 1.0837 49 1 -0.3310 -4.0434 2.3479 50 1 -0.0860 -4.7980 0.7474 51 1 -0.2172 -1.9720 1.3889 52 1 0.0278 -2.7266 -0.2116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152165606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:33 Heat of formation + Delta-G solvation = -61.814120 kcal Electronic energy + Delta-G solvation = -31600.282810 eV Core-core repulsion = 27564.181479 eV Total energy + Delta-G solvation = -4036.101330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56937 -40.46066 -39.50011 -37.37741 -36.37890 -35.57404 -34.77530 -31.94958 -31.48108 -30.65368 -30.17693 -29.54363 -28.40687 -26.95695 -24.57284 -23.83282 -23.34310 -22.63091 -21.60564 -20.86015 -20.40701 -19.16223 -18.55897 -17.69362 -17.44892 -17.17200 -16.87508 -16.59018 -16.43019 -16.10864 -15.77896 -15.65245 -15.41537 -15.01795 -14.94604 -14.68660 -14.42754 -14.29313 -14.03437 -13.89953 -13.77486 -13.51276 -13.44198 -13.21701 -12.86824 -12.75940 -12.63718 -12.57084 -12.32708 -12.27458 -12.19251 -12.04332 -11.97507 -11.77764 -11.66325 -11.42141 -11.32819 -10.98712 -10.87866 -10.58280 -10.01481 -9.84368 -9.37768 -9.16836 -8.38751 -6.43976 0.35571 0.49775 1.28014 1.32407 1.40327 1.65715 2.04860 2.26319 2.81306 2.88328 2.95626 3.47448 3.56609 3.65686 3.71318 3.89094 4.04265 4.12286 4.15378 4.21999 4.23923 4.29616 4.32238 4.43564 4.50501 4.57415 4.59589 4.59928 4.64976 4.66354 4.70419 4.82003 4.84806 4.85414 4.86103 4.99947 5.06171 5.08200 5.13120 5.14687 5.28945 5.34213 5.36507 5.42252 5.51223 5.55040 5.62424 5.71510 5.83119 6.04071 6.07363 6.18258 6.55478 6.68032 7.04954 7.15756 7.33706 8.78018 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003281 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.180534 B = 8531.293108 C =10189.373685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.056 3.944 4 C 0.508 3.492 5 O -0.559 6.559 6 N -0.566 5.566 7 C 0.231 3.769 8 C -0.534 4.534 9 H 0.028 0.972 10 C 0.015 3.985 11 N -0.942 5.942 12 Si 0.944 3.056 13 H -0.274 1.274 14 H -0.272 1.272 15 H -0.241 1.241 16 C 0.123 3.877 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.135 4.135 22 C 0.032 3.968 23 C 0.135 3.865 24 O -0.561 6.561 25 C -0.138 4.138 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.120 4.120 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.269 0.731 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.382 0.618 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.145 -11.738 17.169 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.075 4.075 4 C 0.297 3.703 5 O -0.437 6.437 6 N -0.294 5.294 7 C 0.110 3.890 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.183 4.183 11 N -0.581 5.581 12 Si 0.766 3.234 13 H -0.199 1.199 14 H -0.196 1.196 15 H -0.164 1.164 16 C 0.032 3.968 17 C -0.154 4.154 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.120 4.120 21 C -0.154 4.154 22 C -0.095 4.095 23 C 0.094 3.906 24 O -0.367 6.367 25 C -0.177 4.177 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.231 0.769 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.096 0.904 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.268 -12.488 16.029 25.417 hybrid contribution -0.717 1.083 -0.544 1.409 sum 14.551 -11.404 15.485 24.116 Atomic orbital electron populations 1.22696 0.87548 1.03185 0.99319 1.61457 1.08102 1.11253 1.44092 1.21952 1.02670 0.89893 0.93005 1.21186 0.77817 0.81043 0.90209 1.90643 1.43155 1.64382 1.45476 1.45544 1.54188 1.09046 1.20623 1.19355 0.93950 0.91952 0.83787 1.21435 1.01668 1.34453 0.99720 0.95330 1.25785 0.95324 0.94448 1.02782 1.70029 1.15332 1.37540 1.35247 0.85772 0.80545 0.78144 0.78911 1.19942 1.19645 1.16440 1.17968 0.91592 0.97922 0.89270 1.21358 0.99139 1.00447 0.94471 1.21316 0.95151 0.96914 0.99103 1.21565 0.94797 0.99316 0.97711 1.21368 1.00945 0.96857 0.92803 1.21441 0.92671 1.00371 1.00930 1.22997 1.01603 0.94001 0.90905 1.22023 0.92976 0.91061 0.84538 1.86548 1.31377 1.81402 1.37397 1.23083 1.00585 0.95771 0.98220 1.22269 0.94624 0.97030 1.01508 1.22170 0.98042 0.95650 1.00363 1.22415 0.95026 0.97686 1.00611 0.94627 0.94617 0.89695 0.91407 0.86064 0.93879 0.95819 0.92158 0.88173 0.83488 0.82267 0.82526 0.85856 0.92401 0.88563 0.76941 0.89933 0.89315 0.90154 0.92298 0.90629 0.92499 0.90395 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 7.99 127.69 1.02 1.70 16 2 N -0.53 -15.69 4.18 -927.02 -3.88 -19.57 16 3 C 0.06 1.73 4.18 85.56 0.36 2.09 16 4 C 0.51 21.95 7.03 87.66 0.62 22.57 16 5 O -0.56 -29.28 14.33 -3.04 -0.04 -29.32 16 6 N -0.57 -24.69 2.49 -635.30 -1.58 -26.28 16 7 C 0.23 11.84 4.23 85.63 0.36 12.20 16 8 C -0.53 -32.41 9.94 25.60 0.25 -32.16 16 9 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 10 C 0.02 0.91 5.47 84.65 0.46 1.37 16 11 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 12 Si 0.94 45.65 27.47 68.60 1.88 47.53 16 13 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 16 C 0.12 4.30 4.45 38.15 0.17 4.47 16 17 C -0.13 -4.26 8.35 22.39 0.19 -4.07 16 18 C -0.11 -2.43 10.04 22.25 0.22 -2.20 16 19 C -0.12 -2.14 10.04 22.29 0.22 -1.92 16 20 C -0.10 -2.06 10.04 22.25 0.22 -1.84 16 21 C -0.13 -3.80 9.81 22.39 0.22 -3.58 16 22 C 0.03 0.66 4.32 86.30 0.37 1.03 16 23 C 0.14 2.70 0.97 -9.72 -0.01 2.69 16 24 O -0.56 -13.70 12.87 -148.98 -1.92 -15.61 16 25 C -0.14 -1.91 6.05 31.88 0.19 -1.71 16 26 C -0.12 -1.73 6.81 31.67 0.22 -1.51 16 27 C -0.12 -2.17 6.80 31.32 0.21 -1.96 16 28 C -0.12 -2.63 4.22 31.32 0.13 -2.49 16 29 H 0.04 1.01 7.82 -2.39 -0.02 0.99 16 30 H 0.03 1.52 5.99 -2.39 -0.01 1.50 16 31 H 0.08 2.68 4.76 -2.39 -0.01 2.67 16 32 H 0.07 2.00 6.48 -2.39 -0.02 1.98 16 33 H 0.12 3.10 7.82 -2.38 -0.02 3.08 16 34 H 0.04 2.09 7.00 -2.39 -0.02 2.07 16 35 H 0.02 1.30 6.78 -2.39 -0.02 1.28 16 36 H 0.27 16.03 8.31 -92.72 -0.77 15.26 16 37 H 0.10 3.54 7.76 -2.91 -0.02 3.52 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 43 H 0.10 1.52 7.72 -2.38 -0.02 1.51 16 44 H 0.38 6.89 9.03 -74.06 -0.67 6.22 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.61 6.48 -2.38 -0.02 1.60 16 52 H 0.05 1.45 7.01 -2.39 -0.02 1.43 16 Total: -1.00 -81.81 406.46 0.39 -81.42 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.19 Total: 27.29 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.44 Total: -5.34 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -5.16 Total: -105.97 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.96 Total: -44.94 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -81.81 0.39 -81.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152165606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.608 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds