Wall clock time and date at job start Sat Apr 11 2020 08:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47291 * 2 1 4 4 O 1.42894 * 109.47633 * 120.00233 * 2 1 3 5 5 C 1.42894 * 114.00444 * 89.99526 * 4 2 1 6 6 C 1.50699 * 109.47727 * 180.02562 * 5 4 2 7 7 C 1.38356 * 119.85626 * 89.99888 * 6 5 4 8 8 C 1.37952 * 120.14896 * 180.02562 * 7 6 5 9 9 C 1.39580 * 119.85151 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.14263 * 179.97438 * 9 8 7 11 11 O 1.21549 * 120.00320 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99503 * 180.02562 * 10 9 8 13 13 C 1.46510 * 119.99630 * 180.02562 * 12 10 9 14 14 H 1.08995 * 112.84659 * 336.19133 * 13 12 10 15 15 C 1.53948 * 113.53531 * 107.50722 * 13 12 10 16 16 C 1.53780 * 87.02274 * 89.18660 * 15 13 12 17 17 H 1.08997 * 113.61025 * 270.76724 * 16 15 13 18 18 C 1.53004 * 113.61608 * 139.95062 * 16 15 13 19 19 N 1.46499 * 109.47198 * 85.86314 * 18 16 15 20 20 C 1.36939 * 119.99933 * 180.27608 * 19 18 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 18 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 18 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.53778 * 87.17316 * 25.35886 * 16 15 13 29 29 C 1.39571 * 119.71000 * 0.25328 * 9 8 7 30 30 C 1.37961 * 119.85253 * 359.46882 * 29 9 8 31 31 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46630 * 300.00139 * 1 2 3 33 33 H 1.09000 * 109.47261 * 59.99701 * 1 2 3 34 34 H 1.09000 * 109.47291 * 240.00127 * 2 1 3 35 35 H 1.08999 * 109.47503 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47212 * 300.00328 * 3 2 1 37 37 H 1.08998 * 109.47359 * 59.99917 * 3 2 1 38 38 H 1.08997 * 109.47063 * 59.99918 * 5 4 2 39 39 H 1.09007 * 109.46984 * 300.00919 * 5 4 2 40 40 H 1.08007 * 119.92598 * 0.02562 * 7 6 5 41 41 H 1.08008 * 120.07765 * 180.02562 * 8 7 6 42 42 H 0.96998 * 120.00668 * 0.02562 * 12 10 9 43 43 H 1.09004 * 113.67302 * 334.65383 * 15 13 12 44 44 H 1.09001 * 113.61015 * 203.70702 * 15 13 12 45 45 H 1.09009 * 109.46730 * 325.86101 * 18 16 15 46 46 H 1.08998 * 109.46846 * 205.86646 * 18 16 15 47 47 H 0.97001 * 119.99790 * 359.97438 * 19 18 16 48 48 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.61729 * 89.15437 * 28 16 15 50 50 H 1.09003 * 113.61852 * 220.06201 * 28 16 15 51 51 H 1.07999 * 120.07429 * 179.72682 * 29 9 8 52 52 H 1.08005 * 119.92478 * 180.27274 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0781 0.9886 6 6 2.7004 -2.6834 2.2748 7 6 1.7976 -3.1600 3.2087 8 6 2.2490 -3.7148 4.3883 9 6 3.6198 -3.7943 4.6390 10 6 4.1105 -4.3871 5.9013 11 8 3.3198 -4.8070 6.7234 12 7 5.4348 -4.4619 6.1405 13 6 5.9211 -5.0498 7.3912 14 1 5.1840 -5.0086 8.1930 15 6 6.5626 -6.4375 7.2095 16 6 7.8935 -5.7031 6.9764 17 1 8.0722 -5.4439 5.9329 18 6 9.0943 -6.3875 7.6326 19 7 9.6237 -7.4142 6.7316 20 6 10.7033 -8.1668 7.1102 21 1 11.1673 -8.0003 8.0712 22 6 11.2013 -9.1436 6.2590 23 7 10.6360 -9.3462 5.0877 24 14 12.6744 -10.1696 6.7751 25 1 12.3497 -10.9107 8.0204 26 1 13.0077 -11.1348 5.6969 27 1 13.8375 -9.2787 7.0182 28 6 7.3134 -4.5467 7.8078 29 6 4.5249 -3.3064 3.6953 30 6 4.0605 -2.7591 2.5170 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8899 38 1 2.9319 -2.2467 0.1985 39 1 1.2538 -2.5433 0.7124 40 1 0.7372 -3.0975 3.0137 41 1 1.5432 -4.0868 5.1164 42 1 6.0659 -4.1265 5.4847 43 1 6.2013 -6.9753 6.3330 44 1 6.5519 -7.0452 8.1143 45 1 8.7817 -6.8512 8.5683 46 1 9.8685 -5.6474 7.8349 47 1 9.2067 -7.5640 5.8687 48 1 10.9843 -10.0285 4.4927 49 1 7.5082 -4.6366 8.8765 50 1 7.5572 -3.5602 7.4135 51 1 5.5867 -3.3609 3.8851 52 1 4.7601 -2.3852 1.7840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755483466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:04:36 Heat of formation + Delta-G solvation = -54.893137 kcal Electronic energy + Delta-G solvation = -28820.074043 eV Core-core repulsion = 24784.272829 eV Total energy + Delta-G solvation = -4035.801214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59129 -40.39305 -39.46416 -38.67896 -36.34617 -34.75124 -34.09469 -32.90224 -32.18304 -31.90789 -28.68390 -28.13317 -27.38945 -26.64041 -25.27982 -23.76398 -23.70948 -22.83273 -22.20787 -21.54831 -20.34108 -19.06422 -19.03803 -17.81229 -17.41045 -16.85359 -16.78071 -16.48864 -16.16404 -16.13835 -15.68898 -15.60345 -15.41390 -15.19508 -15.06489 -14.57628 -14.47913 -14.41284 -14.15804 -13.71715 -13.61991 -13.43372 -13.29555 -13.20766 -13.10671 -12.99827 -12.89130 -12.67385 -12.35536 -12.24022 -12.22738 -12.02855 -11.92155 -11.74755 -11.60526 -11.36676 -11.16528 -11.08946 -10.84752 -10.53383 -10.20222 -10.00704 -9.86015 -8.96975 -7.94241 -5.22471 -0.30503 0.36108 1.47308 1.50460 1.56532 1.69295 2.03865 2.56831 2.60501 3.05844 3.38557 3.55070 3.57574 3.62303 3.74508 3.84008 3.92135 3.94540 3.96156 4.06691 4.14695 4.23965 4.30919 4.32846 4.34228 4.47821 4.55377 4.60231 4.72648 4.77060 4.78498 4.84563 4.87592 4.90161 4.91738 4.93856 4.97539 4.98589 5.00045 5.14532 5.21853 5.26325 5.29464 5.32378 5.34699 5.36548 5.48943 5.49608 5.65325 5.83376 6.28366 6.30618 6.45238 7.10664 7.34428 8.12540 8.35003 9.29120 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.001631 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.935712 B =17160.093752 C =18184.844706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.397 6.397 5 C 0.100 3.900 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.076 4.076 9 C -0.146 4.146 10 C 0.557 3.443 11 O -0.579 6.579 12 N -0.694 5.694 13 C 0.124 3.876 14 H 0.096 0.904 15 C -0.143 4.143 16 C -0.110 4.110 17 H 0.087 0.913 18 C 0.160 3.840 19 N -0.745 5.745 20 C -0.248 4.248 21 H 0.075 0.925 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.276 1.276 28 C -0.115 4.115 29 C -0.086 4.086 30 C -0.108 4.108 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.129 0.871 42 H 0.412 0.588 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.373 0.627 48 H 0.251 0.749 49 H 0.108 0.892 50 H 0.093 0.907 51 H 0.148 0.852 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 22.813 -10.933 32.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.318 6.318 5 C 0.024 3.976 6 C -0.070 4.070 7 C -0.126 4.126 8 C -0.095 4.095 9 C -0.149 4.149 10 C 0.346 3.654 11 O -0.460 6.460 12 N -0.345 5.345 13 C 0.018 3.982 14 H 0.114 0.886 15 C -0.181 4.181 16 C -0.129 4.129 17 H 0.105 0.895 18 C 0.034 3.966 19 N -0.387 5.387 20 C -0.380 4.380 21 H 0.093 0.907 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.802 3.198 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.203 1.203 28 C -0.154 4.154 29 C -0.104 4.104 30 C -0.125 4.125 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.250 0.750 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.126 0.874 50 H 0.111 0.889 51 H 0.165 0.835 52 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.216 22.576 -10.045 32.568 hybrid contribution 0.888 -1.154 -0.472 1.531 sum -20.327 21.421 -10.517 31.348 Atomic orbital electron populations 1.22299 0.95421 1.02554 1.02915 1.22294 0.94173 0.94064 0.87848 1.21887 1.01657 0.94230 1.02955 1.87993 1.86925 1.19777 1.37097 1.21459 1.00875 0.81667 0.93633 1.20085 0.93776 0.96999 0.96125 1.21222 1.00931 0.97882 0.92591 1.21331 0.94300 0.96453 0.97383 1.19963 0.95367 1.04603 0.94959 1.18644 0.82406 0.77804 0.86503 1.90735 1.56254 1.50288 1.48705 1.45541 1.06572 1.61335 1.21091 1.21860 0.96176 0.93505 0.86635 0.88641 1.23443 0.96163 0.96613 1.01913 1.22683 0.93336 0.96916 0.99974 0.89505 1.20825 0.93569 0.89743 0.92512 1.42562 1.35389 1.41439 1.19321 1.19641 1.05821 1.11649 1.00862 0.90726 1.25567 1.02913 1.01496 0.96860 1.69815 1.44680 1.37026 1.10522 0.85211 0.79492 0.78282 0.76775 1.20523 1.22149 1.20251 1.23230 0.92101 0.98305 1.01724 1.21536 1.00038 0.95826 0.93047 1.21296 0.95457 0.98486 0.97305 0.92331 0.92701 0.90181 0.90810 0.92308 0.89502 0.92711 0.90613 0.90987 0.83502 0.85269 0.74953 0.93107 0.89598 0.96227 0.95935 0.79555 0.94065 0.87372 0.88858 0.83484 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.53 71.98 0.69 -0.77 16 2 C 0.07 0.73 3.34 30.59 0.10 0.83 16 3 C -0.15 -1.34 9.56 71.98 0.69 -0.65 16 4 O -0.40 -5.95 9.97 -148.98 -1.49 -7.43 16 5 C 0.10 1.17 5.86 71.24 0.42 1.59 16 6 C -0.07 -1.09 5.52 -19.81 -0.11 -1.20 16 7 C -0.11 -1.84 9.68 22.23 0.22 -1.63 16 8 C -0.08 -1.63 9.60 22.53 0.22 -1.41 16 9 C -0.15 -3.30 5.87 -20.09 -0.12 -3.42 16 10 C 0.56 15.27 7.77 86.79 0.67 15.94 16 11 O -0.58 -20.15 15.95 -3.87 -0.06 -20.21 16 12 N -0.69 -16.20 5.21 -442.62 -2.31 -18.51 16 13 C 0.12 3.12 4.33 45.57 0.20 3.31 16 14 H 0.10 2.58 7.46 -2.39 -0.02 2.56 16 15 C -0.14 -4.34 7.44 31.18 0.23 -4.10 16 16 C -0.11 -3.31 3.62 -10.27 -0.04 -3.35 16 17 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 18 C 0.16 6.25 6.08 86.38 0.53 6.78 16 19 N -0.74 -38.13 5.60 -343.44 -1.92 -40.06 16 20 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 21 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 23 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 24 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C -0.12 -2.54 7.39 31.12 0.23 -2.31 16 29 C -0.09 -1.50 9.54 22.53 0.21 -1.29 16 30 C -0.11 -1.65 9.68 22.23 0.22 -1.43 16 31 H 0.06 0.47 7.87 -2.39 -0.02 0.45 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.53 7.79 -2.39 -0.02 0.51 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.66 8.03 -2.39 -0.02 0.64 16 39 H 0.07 0.66 7.81 -2.38 -0.02 0.64 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.13 2.90 7.65 -2.91 -0.02 2.88 16 42 H 0.41 7.54 6.74 -92.71 -0.62 6.92 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.09 2.69 7.92 -2.39 -0.02 2.67 16 45 H 0.02 0.78 7.88 -2.38 -0.02 0.76 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 48 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 49 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.15 1.92 6.41 -2.91 -0.02 1.90 16 52 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -74.12 427.82 1.77 -72.35 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.42 Total: 35.19 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.66 Total: -10.25 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -3.95 Total: -118.15 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.55 Total: -27.64 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.12 1.77 -72.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755483466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds