Wall clock time and date at job start Sat Apr 11 2020 08:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00325 * 2 1 4 4 C 1.52998 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47211 * 65.70856 * 4 3 2 6 6 C 1.36936 * 119.99681 * 267.90236 * 5 4 3 7 7 H 1.08003 * 120.00035 * 142.26037 * 6 5 4 8 8 C 1.38811 * 120.00153 * 322.25806 * 6 5 4 9 9 N 1.31618 * 120.00205 * 156.38639 * 8 6 5 10 10 Si 1.86799 * 119.99905 * 336.38434 * 8 6 5 11 11 H 1.48497 * 109.47076 * 95.51092 * 10 8 6 12 12 H 1.48504 * 109.47230 * 215.51143 * 10 8 6 13 13 H 1.48499 * 109.47046 * 335.50702 * 10 8 6 14 14 C 1.46502 * 120.00405 * 87.90184 * 5 4 3 15 15 C 1.53005 * 109.47084 * 270.00248 * 14 5 4 16 16 N 1.46494 * 109.46948 * 179.97438 * 15 14 5 17 17 C 1.34775 * 119.99928 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00029 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99923 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47136 * 179.97438 * 19 17 16 21 21 C 1.38252 * 120.03234 * 89.99485 * 20 19 17 22 22 C 1.38099 * 119.93611 * 180.02562 * 21 20 19 23 23 C 1.38496 * 120.21494 * 359.97438 * 22 21 20 24 24 C 1.38221 * 119.85240 * 0.02873 * 23 22 21 25 25 C 1.38102 * 120.03464 * 270.00064 * 20 19 17 26 26 C 1.51367 * 109.76140 * 180.02562 * 24 23 22 27 27 C 1.54354 * 105.17044 * 342.81406 * 26 24 23 28 28 C 1.51679 * 130.31077 * 179.84606 * 23 22 21 29 29 H 1.09001 * 109.46986 * 59.99974 * 1 2 3 30 30 H 1.08997 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47093 * 300.00674 * 1 2 3 32 32 H 1.09001 * 109.46668 * 59.99797 * 3 2 1 33 33 H 1.08997 * 109.46721 * 299.99665 * 3 2 1 34 34 H 1.08997 * 109.47220 * 305.70230 * 4 3 2 35 35 H 1.09006 * 109.46560 * 185.70685 * 4 3 2 36 36 H 0.97000 * 120.00286 * 180.02562 * 9 8 6 37 37 H 1.08991 * 109.47535 * 149.99815 * 14 5 4 38 38 H 1.09003 * 109.46591 * 30.00049 * 14 5 4 39 39 H 1.09003 * 109.46932 * 59.99683 * 15 14 5 40 40 H 1.08994 * 109.46666 * 299.99514 * 15 14 5 41 41 H 0.97008 * 120.00239 * 359.97438 * 16 15 14 42 42 H 1.09003 * 109.47366 * 59.99978 * 19 17 16 43 43 H 1.09000 * 109.47358 * 299.99641 * 19 17 16 44 44 H 1.08007 * 120.03077 * 359.97438 * 21 20 19 45 45 H 1.07995 * 119.89769 * 180.02562 * 22 21 20 46 46 H 1.08001 * 119.89127 * 0.02562 * 25 20 19 47 47 H 1.08993 * 110.30647 * 223.89258 * 26 24 23 48 48 H 1.08998 * 110.38962 * 101.77526 * 26 24 23 49 49 H 1.08998 * 110.82251 * 144.57262 * 27 26 24 50 50 H 1.09003 * 110.82136 * 267.92265 * 27 26 24 51 51 H 1.09001 * 110.25757 * 78.26983 * 28 23 22 52 52 H 1.09000 * 110.49754 * 316.01959 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5792 -1.2580 6 6 4.1403 -0.7776 -1.3452 7 1 3.8663 -1.2971 -2.2516 8 6 4.6572 -1.4855 -0.2688 9 7 4.3985 -2.7696 -0.1403 10 14 5.7199 -0.6156 0.9974 11 1 4.8779 -0.1965 2.1465 12 1 6.7809 -1.5398 1.4721 13 1 6.3460 0.5812 0.3799 14 6 4.2466 1.4256 -2.4232 15 6 2.9660 1.5826 -3.2457 16 7 3.2345 2.4294 -4.4105 17 6 2.2461 2.7078 -5.2834 18 8 1.1345 2.2570 -5.1048 19 6 2.5222 3.5794 -6.4814 20 6 1.2609 3.7340 -7.2916 21 6 0.3905 4.7746 -7.0251 22 6 -0.7650 4.9140 -7.7684 23 6 -1.0551 4.0148 -8.7810 24 6 -0.1850 2.9744 -9.0474 25 6 0.9732 2.8362 -8.3008 26 6 -0.7213 2.1385 -10.1898 27 6 -2.2134 2.5173 -10.3017 28 6 -2.2410 3.9484 -9.7244 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8500 0.5581 0.8354 35 1 3.9784 2.1752 0.1028 36 1 4.7593 -3.2641 0.6121 37 1 5.0187 0.9631 -3.0379 38 1 4.5866 2.4060 -2.0895 39 1 2.1938 2.0451 -2.6309 40 1 2.6261 0.6022 -3.5793 41 1 4.1235 2.7903 -4.5532 42 1 3.2944 3.1175 -7.0966 43 1 2.8620 4.5596 -6.1471 44 1 0.6137 5.4773 -6.2359 45 1 -1.4442 5.7273 -7.5600 46 1 1.6534 2.0233 -8.5081 47 1 -0.6165 1.0774 -9.9638 48 1 -0.1992 2.3809 -11.1154 49 1 -2.5373 2.5129 -11.3424 50 1 -2.8295 1.8463 -9.7031 51 1 -2.1287 4.6807 -10.5239 52 1 -3.1706 4.1196 -9.1815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734580017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:04:37 Heat of formation + Delta-G solvation = -35.833295 kcal Electronic energy + Delta-G solvation = -30089.374683 eV Core-core repulsion = 26054.399966 eV Total energy + Delta-G solvation = -4034.974717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.40796 -39.27888 -37.46950 -36.23127 -35.75691 -34.17044 -32.24570 -31.60933 -30.80311 -29.64501 -28.23041 -27.64892 -26.25339 -25.63620 -23.72083 -22.73336 -22.07804 -21.00367 -20.84993 -20.58553 -19.70352 -17.00901 -16.73663 -16.40503 -16.09847 -16.01480 -15.64962 -15.40210 -15.21190 -14.92018 -14.72912 -14.61167 -14.11273 -13.67617 -13.57075 -13.47069 -13.34956 -13.12589 -13.02124 -12.64284 -12.54878 -12.46144 -12.02441 -11.84452 -11.80828 -11.66152 -11.44510 -11.35844 -11.14736 -11.07431 -10.96484 -10.85011 -10.68771 -10.63183 -10.23701 -9.76293 -9.72337 -9.55715 -8.90436 -8.82905 -8.62311 -8.49694 -8.40945 -6.85519 -5.89478 -3.31508 1.22058 1.33342 2.83928 3.32041 3.36299 3.49674 3.52975 3.76119 4.18741 4.34901 4.58548 4.59123 4.62028 4.74313 4.82688 4.89650 4.94136 5.03631 5.09566 5.22949 5.33299 5.37865 5.43109 5.44355 5.47304 5.55475 5.59947 5.66228 5.68656 5.71594 5.78211 5.87403 5.90167 5.95936 5.97349 6.03546 6.08130 6.13660 6.17651 6.22703 6.30805 6.32691 6.49519 6.53992 6.57347 6.63480 6.76806 6.86440 6.91927 7.73814 7.98488 8.14184 8.43401 8.48870 9.01374 9.78971 10.13531 11.26199 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002103 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.502016 B =13312.041456 C =13607.203714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.259 4.259 7 H 0.075 0.925 8 C 0.045 3.955 9 N -0.892 5.892 10 Si 0.872 3.128 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.271 1.271 14 C 0.140 3.860 15 C 0.096 3.904 16 N -0.727 5.727 17 C 0.508 3.492 18 O -0.533 6.533 19 C -0.102 4.102 20 C -0.061 4.061 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.091 4.091 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.081 4.081 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.396 0.604 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 17.348 -17.124 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.387 4.387 7 H 0.093 0.907 8 C -0.156 4.156 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.196 1.196 14 C 0.013 3.987 15 C -0.029 4.029 16 N -0.379 5.379 17 C 0.293 3.707 18 O -0.409 6.409 19 C -0.142 4.142 20 C -0.061 4.061 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.159 4.159 28 C -0.118 4.118 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.381 16.638 -16.875 25.137 hybrid contribution 0.679 0.797 0.933 1.402 sum -7.702 17.435 -15.943 24.849 Atomic orbital electron populations 1.22647 0.83667 1.01911 0.98374 1.88277 1.17025 1.26425 1.94814 1.23368 0.97328 0.85222 0.97738 1.21382 0.90382 0.96747 0.90849 1.43889 1.76390 1.04270 1.06648 1.18557 1.37309 0.80029 1.02823 0.90693 1.25342 0.97854 0.94807 0.97555 1.69906 1.44207 1.08492 1.30677 0.87006 0.81301 0.79585 0.81896 1.21454 1.23014 1.19604 1.21013 0.93565 0.94325 0.89838 1.22399 1.00800 0.94238 0.85503 1.46102 1.12831 1.52549 1.26445 1.20460 0.85051 0.81447 0.83765 1.90738 1.22745 1.52296 1.75164 1.20683 0.97001 1.01305 0.95245 1.19136 0.95822 0.95467 0.95706 1.20836 0.94178 0.98186 0.99112 1.20524 0.97239 0.99124 0.95636 1.20617 0.96943 0.95848 0.96817 1.20487 0.94828 0.97005 0.97393 1.20425 0.96644 0.98476 0.95397 1.21037 0.95361 0.99433 0.96097 1.22291 0.96156 0.96195 1.01231 1.21084 0.96068 0.97517 0.97108 0.95078 0.90300 0.95596 0.95466 0.94223 0.91543 0.92841 0.92908 0.91899 0.94149 0.92326 0.91250 0.77050 0.88055 0.88103 0.86115 0.86413 0.86401 0.90663 0.90367 0.90670 0.90905 0.90461 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.35 -8.01 10.31 -35.23 -0.36 -8.37 16 3 C 0.04 0.85 6.28 37.16 0.23 1.09 16 4 C 0.13 2.83 4.90 -4.04 -0.02 2.81 16 5 N -0.59 -13.57 2.04 -173.24 -0.35 -13.92 16 6 C -0.26 -7.16 9.53 -15.06 -0.14 -7.30 16 7 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 8 C 0.05 1.31 5.26 -17.43 -0.09 1.21 16 9 N -0.89 -27.53 13.97 55.49 0.78 -26.76 16 10 Si 0.87 21.99 25.15 -169.99 -4.28 17.71 16 11 H -0.29 -7.12 6.66 56.52 0.38 -6.74 16 12 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.14 2.55 5.83 -4.04 -0.02 2.52 16 15 C 0.10 1.69 5.95 -4.04 -0.02 1.67 16 16 N -0.73 -9.87 5.56 -60.30 -0.33 -10.21 16 17 C 0.51 7.36 7.82 -10.98 -0.09 7.27 16 18 O -0.53 -10.37 16.03 5.56 0.09 -10.28 16 19 C -0.10 -1.03 5.83 -29.03 -0.17 -1.20 16 20 C -0.06 -0.73 4.37 -104.67 -0.46 -1.18 16 21 C -0.11 -1.20 9.70 -39.63 -0.38 -1.59 16 22 C -0.11 -1.17 10.04 -39.54 -0.40 -1.57 16 23 C -0.10 -1.12 6.15 -104.05 -0.64 -1.75 16 24 C -0.10 -1.11 6.14 -104.21 -0.64 -1.75 16 25 C -0.09 -1.10 9.69 -39.54 -0.38 -1.49 16 26 C -0.08 -0.72 6.77 -26.85 -0.18 -0.90 16 27 C -0.12 -0.91 7.07 -25.32 -0.18 -1.09 16 28 C -0.08 -0.66 6.80 -26.70 -0.18 -0.84 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.76 5.94 -51.93 -0.31 0.45 16 34 H 0.07 1.60 3.50 -51.93 -0.18 1.42 16 35 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.04 0.63 7.91 -51.93 -0.41 0.22 16 39 H 0.06 1.11 6.00 -51.93 -0.31 0.80 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 42 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 417.14 15.07 6.29 6.29 Total: -1.00 -35.84 417.14 -9.56 -45.40 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.73 Total: 2.53 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.66 Total: -2.39 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.09 Total: -50.89 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.27 Total: -18.65 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.28 Total: 17.71 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.84 -9.56 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734580017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds