Wall clock time and date at job start Sat Apr 11 2020 08:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00325 * 2 1 4 4 C 1.52998 * 109.46838 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47211 * 65.70856 * 4 3 2 6 6 C 1.36936 * 119.99681 * 267.90236 * 5 4 3 7 7 H 1.08003 * 120.00035 * 142.26037 * 6 5 4 8 8 C 1.38811 * 120.00153 * 322.25806 * 6 5 4 9 9 N 1.31618 * 120.00205 * 156.38639 * 8 6 5 10 10 Si 1.86799 * 119.99905 * 336.38434 * 8 6 5 11 11 H 1.48497 * 109.47076 * 95.51092 * 10 8 6 12 12 H 1.48504 * 109.47230 * 215.51143 * 10 8 6 13 13 H 1.48499 * 109.47046 * 335.50702 * 10 8 6 14 14 C 1.46502 * 120.00405 * 87.90184 * 5 4 3 15 15 C 1.53005 * 109.47084 * 270.00248 * 14 5 4 16 16 N 1.46494 * 109.46948 * 179.97438 * 15 14 5 17 17 C 1.34775 * 119.99928 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00029 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99923 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47136 * 179.97438 * 19 17 16 21 21 C 1.38252 * 120.03234 * 89.99485 * 20 19 17 22 22 C 1.38099 * 119.93611 * 180.02562 * 21 20 19 23 23 C 1.38496 * 120.21494 * 359.97438 * 22 21 20 24 24 C 1.38221 * 119.85240 * 0.02873 * 23 22 21 25 25 C 1.38102 * 120.03464 * 270.00064 * 20 19 17 26 26 C 1.51367 * 109.76140 * 180.02562 * 24 23 22 27 27 C 1.54354 * 105.17044 * 342.81406 * 26 24 23 28 28 C 1.51679 * 130.31077 * 179.84606 * 23 22 21 29 29 H 1.09001 * 109.46986 * 59.99974 * 1 2 3 30 30 H 1.08997 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47093 * 300.00674 * 1 2 3 32 32 H 1.09001 * 109.46668 * 59.99797 * 3 2 1 33 33 H 1.08997 * 109.46721 * 299.99665 * 3 2 1 34 34 H 1.08997 * 109.47220 * 305.70230 * 4 3 2 35 35 H 1.09006 * 109.46560 * 185.70685 * 4 3 2 36 36 H 0.97000 * 120.00286 * 180.02562 * 9 8 6 37 37 H 1.08991 * 109.47535 * 149.99815 * 14 5 4 38 38 H 1.09003 * 109.46591 * 30.00049 * 14 5 4 39 39 H 1.09003 * 109.46932 * 59.99683 * 15 14 5 40 40 H 1.08994 * 109.46666 * 299.99514 * 15 14 5 41 41 H 0.97008 * 120.00239 * 359.97438 * 16 15 14 42 42 H 1.09003 * 109.47366 * 59.99978 * 19 17 16 43 43 H 1.09000 * 109.47358 * 299.99641 * 19 17 16 44 44 H 1.08007 * 120.03077 * 359.97438 * 21 20 19 45 45 H 1.07995 * 119.89769 * 180.02562 * 22 21 20 46 46 H 1.08001 * 119.89127 * 0.02562 * 25 20 19 47 47 H 1.08993 * 110.30647 * 223.89258 * 26 24 23 48 48 H 1.08998 * 110.38962 * 101.77526 * 26 24 23 49 49 H 1.08998 * 110.82251 * 144.57262 * 27 26 24 50 50 H 1.09003 * 110.82136 * 267.92265 * 27 26 24 51 51 H 1.09001 * 110.25757 * 78.26983 * 28 23 22 52 52 H 1.09000 * 110.49754 * 316.01959 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5792 -1.2580 6 6 4.1403 -0.7776 -1.3452 7 1 3.8663 -1.2971 -2.2516 8 6 4.6572 -1.4855 -0.2688 9 7 4.3985 -2.7696 -0.1403 10 14 5.7199 -0.6156 0.9974 11 1 4.8779 -0.1965 2.1465 12 1 6.7809 -1.5398 1.4721 13 1 6.3460 0.5812 0.3799 14 6 4.2466 1.4256 -2.4232 15 6 2.9660 1.5826 -3.2457 16 7 3.2345 2.4294 -4.4105 17 6 2.2461 2.7078 -5.2834 18 8 1.1345 2.2570 -5.1048 19 6 2.5222 3.5794 -6.4814 20 6 1.2609 3.7340 -7.2916 21 6 0.3905 4.7746 -7.0251 22 6 -0.7650 4.9140 -7.7684 23 6 -1.0551 4.0148 -8.7810 24 6 -0.1850 2.9744 -9.0474 25 6 0.9732 2.8362 -8.3008 26 6 -0.7213 2.1385 -10.1898 27 6 -2.2134 2.5173 -10.3017 28 6 -2.2410 3.9484 -9.7244 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8500 0.5581 0.8354 35 1 3.9784 2.1752 0.1028 36 1 4.7593 -3.2641 0.6121 37 1 5.0187 0.9631 -3.0379 38 1 4.5866 2.4060 -2.0895 39 1 2.1938 2.0451 -2.6309 40 1 2.6261 0.6022 -3.5793 41 1 4.1235 2.7903 -4.5532 42 1 3.2944 3.1175 -7.0966 43 1 2.8620 4.5596 -6.1471 44 1 0.6137 5.4773 -6.2359 45 1 -1.4442 5.7273 -7.5600 46 1 1.6534 2.0233 -8.5081 47 1 -0.6165 1.0774 -9.9638 48 1 -0.1992 2.3809 -11.1154 49 1 -2.5373 2.5129 -11.3424 50 1 -2.8295 1.8463 -9.7031 51 1 -2.1287 4.6807 -10.5239 52 1 -3.1706 4.1196 -9.1815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734580017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:04:36 Heat of formation + Delta-G solvation = -59.585624 kcal Electronic energy + Delta-G solvation = -30090.404661 eV Core-core repulsion = 26054.399966 eV Total energy + Delta-G solvation = -4036.004696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27945 -40.38811 -39.10529 -37.57384 -36.84391 -35.63453 -33.71235 -33.04193 -31.73324 -31.02623 -29.59498 -28.62057 -27.24319 -27.17493 -25.46318 -23.75788 -23.37638 -22.34331 -21.84005 -21.68186 -20.74242 -18.82891 -18.02485 -17.73342 -17.22217 -17.04471 -17.00614 -16.60478 -16.40099 -16.26494 -15.97644 -15.82347 -15.55487 -15.21312 -15.02569 -14.76091 -14.38297 -14.23852 -14.13178 -13.87988 -13.70581 -13.60143 -13.41981 -13.25583 -12.92827 -12.82842 -12.55796 -12.48614 -12.42465 -12.32613 -12.13466 -12.05696 -11.86661 -11.75630 -11.70198 -11.59883 -11.43464 -10.98247 -10.55531 -10.41843 -10.00054 -9.66668 -9.29043 -8.77052 -8.09140 -5.48095 0.38543 0.49445 1.37104 1.45831 1.57205 1.69850 2.21959 2.51316 2.84615 3.09539 3.12613 3.46419 3.53739 3.66229 3.77401 4.07416 4.11054 4.14269 4.16046 4.18228 4.24804 4.32777 4.36268 4.39422 4.48783 4.53536 4.54920 4.58781 4.61895 4.63374 4.63991 4.73922 4.74867 4.80701 4.81801 4.91883 4.93129 4.99331 5.06111 5.14523 5.20912 5.25454 5.29328 5.33019 5.50274 5.51993 5.65738 5.72637 6.00823 6.12504 6.25597 6.52503 6.65489 7.04932 7.35599 7.70388 8.08305 9.11205 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002103 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.502016 B =13312.041456 C =13607.203714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.240 4.240 7 H 0.025 0.975 8 C -0.017 4.017 9 N -0.949 5.949 10 Si 0.945 3.055 11 H -0.280 1.280 12 H -0.313 1.313 13 H -0.245 1.245 14 C 0.142 3.858 15 C 0.116 3.884 16 N -0.712 5.712 17 C 0.506 3.494 18 O -0.589 6.589 19 C -0.090 4.090 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.084 4.084 27 C -0.119 4.119 28 C -0.079 4.079 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.258 0.742 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.020 0.980 41 H 0.418 0.582 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.119 0.881 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.094 0.906 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 21.180 -17.478 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.370 4.370 7 H 0.043 0.957 8 C -0.213 4.213 9 N -0.593 5.593 10 Si 0.773 3.227 11 H -0.208 1.208 12 H -0.242 1.242 13 H -0.168 1.168 14 C 0.016 3.984 15 C -0.011 4.011 16 N -0.366 5.366 17 C 0.294 3.706 18 O -0.469 6.469 19 C -0.129 4.129 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.121 4.121 27 C -0.156 4.156 28 C -0.116 4.116 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.256 0.744 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.084 0.916 51 H 0.112 0.888 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.798 20.551 -17.259 27.947 hybrid contribution 0.374 -0.382 0.931 1.074 sum -7.424 20.169 -16.328 26.991 Atomic orbital electron populations 1.22762 0.81579 1.02423 0.99891 1.88201 1.19610 1.28696 1.95200 1.23405 0.96371 0.84389 0.99462 1.21578 0.91624 0.98103 0.88870 1.43966 1.76878 1.02985 1.08664 1.18304 1.35477 0.82417 1.00762 0.95699 1.26012 0.99484 0.95423 1.00416 1.70067 1.46399 1.10687 1.32172 0.85839 0.78775 0.78773 0.79305 1.20785 1.24206 1.16815 1.21147 0.93458 0.95503 0.88321 1.21864 1.00219 0.92426 0.86558 1.45872 1.14037 1.51557 1.25111 1.21279 0.84056 0.80891 0.84418 1.90720 1.25132 1.54526 1.76512 1.20708 0.96996 1.02139 0.93077 1.19403 0.96818 0.95693 0.95996 1.21135 0.94385 0.98538 0.99589 1.20860 0.97552 0.99745 0.95605 1.21054 0.97798 0.95563 0.97163 1.20899 0.94873 0.97780 0.98134 1.20678 0.97377 0.98926 0.96244 1.21121 0.96374 0.98746 0.95851 1.22325 0.95081 0.95650 1.02545 1.21158 0.95153 0.98253 0.97062 0.94757 0.90487 0.92651 0.92301 0.93654 0.94110 0.88396 0.93285 0.91938 0.89639 0.93355 0.96187 0.74429 0.85526 0.84582 0.84668 0.84606 0.86283 0.91194 0.88919 0.88315 0.91566 0.88821 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 11.01 113.37 1.25 2.33 16 2 O -0.40 -18.40 10.31 -148.98 -1.54 -19.94 16 3 C 0.04 1.61 6.28 71.98 0.45 2.06 16 4 C 0.12 4.96 4.90 86.38 0.42 5.39 16 5 N -0.60 -27.11 2.04 -702.00 -1.43 -28.55 16 6 C -0.24 -13.64 9.53 84.03 0.80 -12.84 16 7 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 8 C -0.02 -1.02 5.26 84.86 0.45 -0.58 16 9 N -0.95 -61.18 13.97 21.65 0.30 -60.88 16 10 Si 0.94 45.71 25.15 68.60 1.73 47.44 16 11 H -0.28 -13.16 6.66 99.48 0.66 -12.50 16 12 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 13 H -0.24 -10.66 7.11 99.48 0.71 -9.95 16 14 C 0.14 4.87 5.83 86.38 0.50 5.38 16 15 C 0.12 4.06 5.95 86.38 0.51 4.58 16 16 N -0.71 -18.11 5.56 -463.07 -2.57 -20.68 16 17 C 0.51 14.15 7.82 87.66 0.69 14.83 16 18 O -0.59 -23.30 16.03 -3.03 -0.05 -23.35 16 19 C -0.09 -1.61 5.83 29.10 0.17 -1.44 16 20 C -0.08 -1.80 4.37 -19.89 -0.09 -1.89 16 21 C -0.12 -2.59 9.70 22.24 0.22 -2.37 16 22 C -0.12 -2.51 10.04 22.30 0.22 -2.28 16 23 C -0.12 -2.44 6.15 -19.49 -0.12 -2.56 16 24 C -0.12 -2.64 6.14 -19.60 -0.12 -2.76 16 25 C -0.11 -2.76 9.69 22.30 0.22 -2.54 16 26 C -0.08 -1.42 6.77 30.52 0.21 -1.21 16 27 C -0.12 -1.62 7.07 31.51 0.22 -1.40 16 28 C -0.08 -1.17 6.80 30.61 0.21 -0.96 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.66 5.94 -2.39 -0.01 1.64 16 34 H 0.04 1.87 3.50 -2.39 -0.01 1.86 16 35 H 0.10 3.06 7.92 -2.38 -0.02 3.04 16 36 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 38 H 0.09 2.25 7.91 -2.39 -0.02 2.23 16 39 H 0.05 1.80 6.00 -2.39 -0.01 1.79 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.42 6.95 8.47 -92.70 -0.79 6.17 16 42 H 0.13 1.64 8.09 -2.39 -0.02 1.62 16 43 H 0.14 1.49 8.09 -2.39 -0.02 1.47 16 44 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 45 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -83.92 417.14 2.73 -81.20 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.08 Total: 23.04 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.21 Total: 1.72 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.70 Total: -110.10 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.58 Total: -43.29 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.73 Total: 47.44 kcal Total: -83.92 2.73 -81.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734580017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.610 kcal (2) G-P(sol) polarization free energy of solvation -83.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds