Wall clock time and date at job start Sat Apr 11 2020 08:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 117.00207 * 2 1 4 4 C 1.38726 * 120.05958 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94674 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05605 * 0.02673 * 5 4 3 7 7 C 1.50697 * 119.94741 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47282 * 89.99860 * 7 6 5 9 9 C 1.50700 * 109.47342 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99607 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00129 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99957 * 185.01419 * 11 9 8 13 13 C 1.53004 * 110.01454 * 62.41404 * 12 11 9 14 14 N 1.46495 * 109.47264 * 53.31033 * 13 12 11 15 15 C 1.36941 * 120.00323 * 174.88019 * 14 13 12 16 16 H 1.08004 * 119.99251 * 4.80912 * 15 14 13 17 17 C 1.38803 * 120.00028 * 184.81327 * 15 14 13 18 18 N 1.31631 * 119.99904 * 173.93359 * 17 15 14 19 19 Si 1.86800 * 120.00303 * 354.20995 * 17 15 14 20 20 H 1.48498 * 109.47286 * 94.17840 * 19 17 15 21 21 H 1.48498 * 109.46872 * 214.18038 * 19 17 15 22 22 H 1.48500 * 109.46802 * 334.17826 * 19 17 15 23 23 C 1.54261 * 110.07106 * 183.83170 * 12 11 9 24 24 C 1.54889 * 104.19574 * 95.70087 * 23 12 11 25 25 C 1.54887 * 102.75229 * 37.93996 * 24 23 12 26 26 C 1.53872 * 110.03246 * 301.02341 * 12 11 9 27 27 C 1.38274 * 120.10986 * 0.24719 * 6 5 4 28 28 C 1.38140 * 120.05191 * 359.45449 * 27 6 5 29 29 H 1.08999 * 109.47306 * 60.00091 * 1 2 3 30 30 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 299.99725 * 1 2 3 32 32 H 1.08006 * 120.03032 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97510 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.46821 * 330.00042 * 7 6 5 35 35 H 1.09001 * 109.47370 * 209.99462 * 7 6 5 36 36 H 1.08997 * 109.47369 * 59.99892 * 8 7 6 37 37 H 1.09001 * 109.46593 * 300.00078 * 8 7 6 38 38 H 0.96999 * 119.99948 * 5.01390 * 11 9 8 39 39 H 1.08996 * 109.47119 * 293.30900 * 13 12 11 40 40 H 1.09007 * 109.46895 * 173.30922 * 13 12 11 41 41 H 0.97005 * 119.99698 * 354.88029 * 14 13 12 42 42 H 0.96999 * 120.00139 * 180.02562 * 18 17 15 43 43 H 1.09007 * 110.48205 * 214.37581 * 23 12 11 44 44 H 1.08998 * 110.49004 * 337.01631 * 23 12 11 45 45 H 1.09003 * 110.75452 * 279.62265 * 24 23 12 46 46 H 1.09000 * 110.75500 * 156.25989 * 24 23 12 47 47 H 1.08996 * 110.48510 * 203.38170 * 25 24 23 48 48 H 1.09002 * 110.48619 * 80.73212 * 25 24 23 49 49 H 1.09002 * 110.03556 * 359.95382 * 26 12 11 50 50 H 1.09005 * 110.03123 * 121.38295 * 26 12 11 51 51 H 1.07997 * 119.96928 * 179.71150 * 27 6 5 52 52 H 1.08007 * 120.02417 * 180.25169 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 6 4.2180 5.4740 -1.4393 9 6 4.9027 6.8165 -1.4382 10 8 5.1775 7.3560 -0.3874 11 7 5.2087 7.4179 -2.6049 12 6 5.9712 8.6688 -2.6062 13 6 7.3562 8.4386 -1.9981 14 7 8.0131 7.3251 -2.6871 15 6 9.3088 7.0014 -2.3845 16 1 9.8209 7.5153 -1.5845 17 6 9.9638 6.0129 -3.1060 18 7 11.2430 5.7837 -2.8968 19 14 9.0318 5.0130 -4.3792 20 1 9.2039 5.6324 -5.7179 21 1 9.5615 3.6259 -4.4038 22 1 7.5892 4.9858 -4.0281 23 6 6.1087 9.2035 -4.0466 24 6 4.9524 10.2248 -4.1847 25 6 4.9230 10.8985 -2.7903 26 6 5.2173 9.7465 -1.8074 27 6 1.9210 3.6047 0.0068 28 6 1.2915 2.3751 0.0001 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 0.0005 33 1 5.1345 2.5750 0.0019 34 1 4.9437 4.9378 0.5169 35 1 3.3577 5.7460 0.5168 36 1 3.2604 5.5546 -1.9535 37 1 4.8463 4.7465 -1.9534 38 1 4.9241 7.0225 -3.4436 39 1 7.2531 8.2007 -0.9394 40 1 7.9571 9.3410 -2.1110 41 1 7.5302 6.8172 -3.3578 42 1 11.7008 5.0932 -3.4013 43 1 7.0715 9.6969 -4.1801 44 1 5.9907 8.3940 -4.7670 45 1 4.0100 9.7162 -4.3880 46 1 5.1736 10.9558 -4.9624 47 1 3.9397 11.3259 -2.5939 48 1 5.6943 11.6656 -2.7209 49 1 4.2837 9.3390 -1.4194 50 1 5.8382 10.1055 -0.9865 51 1 1.3342 4.5113 0.0120 52 1 0.2128 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753509756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:45 Heat of formation + Delta-G solvation = -49.059628 kcal Electronic energy + Delta-G solvation = -30653.359835 eV Core-core repulsion = 26617.811581 eV Total energy + Delta-G solvation = -4035.548254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.41222 -40.10257 -38.16573 -37.46920 -34.46287 -33.51953 -33.16179 -31.28208 -31.22062 -29.60520 -28.68142 -28.28768 -27.43748 -24.77554 -24.13632 -22.80450 -21.86720 -21.26706 -20.69406 -20.13612 -19.07038 -18.37203 -17.57453 -16.94955 -16.52056 -16.02547 -15.99379 -15.38087 -15.29147 -14.89997 -14.46822 -14.39143 -14.30724 -14.01413 -13.72741 -13.65919 -13.33648 -13.05074 -12.97526 -12.82177 -12.58430 -12.28819 -12.15885 -12.05153 -11.80247 -11.45897 -11.34582 -11.15531 -11.09903 -11.02547 -10.97705 -10.91749 -10.80534 -10.69160 -10.55740 -10.40322 -10.13148 -9.58980 -9.41181 -9.16203 -8.80780 -8.62601 -8.23900 -7.14183 -5.73009 -3.06270 1.18134 1.24202 2.99457 3.02133 3.34974 3.36068 3.41895 3.44573 3.64286 4.54950 4.59018 4.60741 4.67509 4.73731 4.77352 4.79787 4.80637 4.98269 5.04499 5.11384 5.12484 5.21912 5.30509 5.34234 5.41376 5.50584 5.52692 5.59877 5.60840 5.65962 5.72445 5.77532 5.80793 5.89069 5.91866 5.97599 6.02983 6.09859 6.17168 6.19381 6.20660 6.34877 6.41493 6.45964 6.52926 6.56672 6.61542 6.85224 7.04955 7.16804 7.82752 8.06514 8.46296 8.59112 9.26721 9.98883 10.20633 11.45874 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.002965 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.425919 B = 9441.676135 C =11554.778017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.148 4.148 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.060 4.060 8 C -0.137 4.137 9 C 0.519 3.481 10 O -0.532 6.532 11 N -0.719 5.719 12 C 0.165 3.835 13 C 0.151 3.849 14 N -0.750 5.750 15 C -0.235 4.235 16 H 0.088 0.912 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.882 3.118 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.279 1.279 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.078 4.078 28 C -0.208 4.208 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.394 0.606 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.358 0.642 42 H 0.258 0.742 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.124 0.876 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.082 -2.404 1.481 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.073 3.927 4 C -0.167 4.167 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.097 4.097 8 C -0.177 4.177 9 C 0.306 3.694 10 O -0.408 6.408 11 N -0.370 5.370 12 C 0.080 3.920 13 C 0.023 3.977 14 N -0.395 5.395 15 C -0.365 4.365 16 H 0.106 0.894 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.713 3.287 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.153 4.153 27 C -0.096 4.096 28 C -0.227 4.227 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.191 0.809 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.142 0.858 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.549 -2.190 2.357 24.759 hybrid contribution -0.894 -1.064 -1.439 2.001 sum -25.443 -3.254 0.917 25.667 Atomic orbital electron populations 1.23029 0.78581 1.03798 1.01289 1.86065 1.21239 1.27137 1.88905 1.19041 0.92406 0.84058 0.97231 1.20459 0.91310 0.98793 1.06118 1.21016 1.00361 0.90920 0.96912 1.19885 0.93461 0.95417 1.02625 1.20258 1.01605 0.92421 0.95451 1.21674 1.01589 0.95265 0.99135 1.20442 0.78589 0.86556 0.83831 1.90675 1.53367 1.65670 1.31134 1.46129 1.56881 1.25571 1.08445 1.21297 0.91877 0.83291 0.95580 1.21108 0.88804 0.91497 0.96268 1.42578 1.13016 1.36257 1.47688 1.19068 0.86792 1.16421 1.14232 0.89384 1.24645 0.95478 0.99992 0.99216 1.69722 1.08076 1.35604 1.44954 0.86542 0.79305 0.80499 0.82333 1.21288 1.21810 1.20560 1.22637 0.99813 0.98686 0.94786 1.22518 0.98364 0.98109 0.97188 1.22401 1.01112 0.97873 0.94920 1.22388 1.00624 0.94443 0.97866 1.20847 0.94000 0.96939 0.97800 1.21188 0.99804 0.92386 1.09276 0.92724 0.88365 0.92723 0.85202 0.84896 0.89843 0.90409 0.89469 0.88790 0.77272 0.94090 0.94625 0.80949 0.93197 0.89406 0.91424 0.91885 0.91617 0.92063 0.91510 0.91286 0.90866 0.85809 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.34 10.50 -19.41 -0.20 -3.54 16 3 C 0.12 1.31 6.69 -39.22 -0.26 1.05 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.07 -0.87 9.69 -39.61 -0.38 -1.25 16 6 C -0.11 -1.30 5.14 -104.60 -0.54 -1.83 16 7 C -0.06 -0.73 4.63 -27.88 -0.13 -0.86 16 8 C -0.14 -1.67 5.68 -27.88 -0.16 -1.83 16 9 C 0.52 8.03 6.98 -10.99 -0.08 7.95 16 10 O -0.53 -9.92 13.21 5.56 0.07 -9.85 16 11 N -0.72 -10.38 4.40 -46.57 -0.20 -10.59 16 12 C 0.17 2.56 0.58 -130.70 -0.08 2.49 16 13 C 0.15 3.08 4.59 -4.04 -0.02 3.07 16 14 N -0.75 -17.87 5.10 -59.91 -0.31 -18.18 16 15 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 16 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 18 N -0.93 -29.75 13.97 55.49 0.78 -28.98 16 19 Si 0.88 22.05 27.77 -169.99 -4.72 17.33 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.42 6.49 56.52 0.37 -6.06 16 23 C -0.12 -1.65 5.82 -25.07 -0.15 -1.79 16 24 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 25 C -0.13 -1.41 6.83 -25.07 -0.17 -1.58 16 26 C -0.11 -1.60 5.17 -25.61 -0.13 -1.73 16 27 C -0.08 -0.79 9.69 -39.60 -0.38 -1.17 16 28 C -0.21 -2.04 9.04 -39.43 -0.36 -2.40 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 35 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.39 4.75 8.24 -40.82 -0.34 4.41 16 39 H 0.04 0.94 6.76 -51.93 -0.35 0.59 16 40 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 41 H 0.36 8.17 5.04 -40.82 -0.21 7.96 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.09 1.31 7.75 -51.93 -0.40 0.90 16 44 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.00 6.96 -51.93 -0.36 0.64 16 50 H 0.07 1.11 7.67 -51.93 -0.40 0.71 16 51 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 52 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 LS Contribution 412.23 15.07 6.21 6.21 Total: -1.00 -34.77 412.23 -9.69 -44.45 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -8.65 Total: 12.45 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.66 Total: -9.31 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.26 Total: -57.75 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.13 Total: -13.39 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.77 -9.69 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753509756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.607 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds