Wall clock time and date at job start Sat Apr 11 2020 08:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99814 * 2 1 4 4 H 1.08997 * 109.47222 * 30.00065 * 3 2 1 5 5 C 1.50701 * 109.47009 * 149.99747 * 3 2 1 6 6 O 1.21289 * 120.00051 * 22.93755 * 5 3 2 7 7 N 1.34775 * 120.00356 * 202.93999 * 5 3 2 8 8 C 1.46932 * 120.62742 * 355.58854 * 7 5 3 9 9 C 1.53190 * 108.89273 * 233.68570 * 8 7 5 10 10 C 1.53038 * 109.31237 * 305.29310 * 9 8 7 11 11 C 1.53036 * 109.54120 * 61.36369 * 10 9 8 12 12 H 1.09009 * 109.49708 * 58.58627 * 11 10 9 13 13 C 1.53000 * 109.50162 * 178.65034 * 11 10 9 14 14 C 1.53001 * 109.47148 * 295.00319 * 13 11 10 15 15 N 1.46499 * 109.46632 * 179.97438 * 14 13 11 16 16 C 1.36940 * 119.99788 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99517 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31612 * 119.99931 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47013 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46693 * 120.00100 * 20 18 16 23 23 H 1.48492 * 109.47285 * 240.00252 * 20 18 16 24 24 C 1.47198 * 120.81897 * 175.73565 * 7 5 3 25 25 C 1.50698 * 109.47221 * 269.99719 * 3 2 1 26 26 C 1.38232 * 119.99735 * 312.89792 * 25 3 2 27 27 C 1.38241 * 119.99505 * 179.74436 * 26 25 3 28 28 C 1.38238 * 120.00180 * 0.52703 * 27 26 25 29 29 C 1.38235 * 119.99834 * 359.74585 * 28 27 26 30 30 C 1.38238 * 119.99773 * 133.16371 * 25 3 2 31 31 H 1.09003 * 109.47069 * 300.00241 * 1 2 3 32 32 H 1.09000 * 109.46992 * 60.00115 * 1 2 3 33 33 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.58929 * 113.82232 * 8 7 5 35 35 H 1.09002 * 109.58682 * 353.54098 * 8 7 5 36 36 H 1.09003 * 109.50083 * 65.24262 * 9 8 7 37 37 H 1.09005 * 109.49822 * 185.31097 * 9 8 7 38 38 H 1.08998 * 109.46252 * 181.38843 * 10 9 8 39 39 H 1.09008 * 109.45983 * 301.34901 * 10 9 8 40 40 H 1.09001 * 109.46854 * 55.00865 * 13 11 10 41 41 H 1.09005 * 109.47048 * 175.00201 * 13 11 10 42 42 H 1.08994 * 109.47174 * 299.99618 * 14 13 11 43 43 H 1.08995 * 109.47149 * 60.00006 * 14 13 11 44 44 H 0.96995 * 120.00366 * 359.97438 * 15 14 13 45 45 H 0.97001 * 120.00084 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.53344 * 6.53344 * 24 7 5 47 47 H 1.08995 * 109.68051 * 246.22317 * 24 7 5 48 48 H 1.08000 * 120.00297 * 359.97438 * 26 25 3 49 49 H 1.08007 * 119.99762 * 180.28870 * 27 26 25 50 50 H 1.07991 * 120.00295 * 179.76890 * 28 27 26 51 51 H 1.07995 * 120.00153 * 180.02562 * 29 28 27 52 52 H 1.07999 * 120.00089 * 0.02562 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.9444 0.2173 0.8031 7 7 3.8536 2.3899 1.2430 8 6 3.1801 3.6823 1.0563 9 6 4.1826 4.6848 0.4761 10 6 5.4164 4.7471 1.3793 11 6 6.0838 3.3709 1.4298 12 1 6.3624 3.0644 0.4214 13 6 7.3361 3.4423 2.3060 14 6 8.3645 4.3668 1.6513 15 7 9.5632 4.4357 2.4907 16 6 10.6258 5.2086 2.1048 17 1 10.5798 5.7677 1.1820 18 6 11.7614 5.2743 2.9003 19 7 11.8172 4.5933 4.0252 20 14 13.2111 6.3281 2.3736 21 1 12.8996 6.9874 1.0798 22 1 13.4715 7.3632 3.4061 23 1 14.4142 5.4720 2.2163 24 6 5.1028 2.3534 2.0207 25 6 2.2146 1.7644 -1.4208 26 6 2.7971 0.9163 -2.3440 27 6 2.9797 1.3354 -3.6486 28 6 2.5899 2.6065 -4.0273 29 6 2.0126 3.4566 -3.1026 30 6 1.8246 3.0355 -1.7994 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.8140 4.0457 2.0164 35 1 2.3435 3.5623 0.3679 36 1 4.4791 4.3661 -0.5232 37 1 3.7210 5.6708 0.4215 38 1 6.1208 5.4779 0.9821 39 1 5.1159 5.0420 2.3848 40 1 7.0702 3.8323 3.2885 41 1 7.7613 2.4445 2.4141 42 1 8.6303 3.9768 0.6689 43 1 7.9393 5.3646 1.5432 44 1 9.6041 3.9344 3.3200 45 1 12.6109 4.6389 4.5809 46 1 5.5362 1.3547 1.9676 47 1 4.8956 2.6070 3.0603 48 1 3.1061 -0.0750 -2.0470 49 1 3.4306 0.6711 -4.3711 50 1 2.7359 2.9352 -5.0455 51 1 1.7076 4.4494 -3.3985 52 1 1.3739 3.6997 -1.0769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753559378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:48 Heat of formation + Delta-G solvation = -44.040957 kcal Electronic energy + Delta-G solvation = -30946.597441 eV Core-core repulsion = 26911.266812 eV Total energy + Delta-G solvation = -4035.330628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97566 -39.34483 -38.21735 -37.31241 -35.38487 -33.63286 -32.35955 -32.02995 -31.25549 -30.72497 -28.49534 -27.50414 -26.33037 -25.26667 -23.93279 -22.94329 -22.32535 -22.23213 -21.33050 -20.06235 -19.22137 -17.90131 -17.43057 -16.98694 -16.92077 -16.17114 -15.84211 -15.23504 -14.95756 -14.89778 -14.81925 -14.74057 -14.42372 -14.36673 -13.81412 -13.68613 -13.45951 -13.25212 -13.19307 -13.12363 -12.92501 -12.74116 -12.65445 -12.12939 -11.85293 -11.62869 -11.43052 -11.31030 -11.22571 -11.01520 -10.93812 -10.76339 -10.57177 -10.45353 -10.35395 -10.14950 -9.99164 -9.84628 -9.65950 -9.24231 -9.07954 -8.84578 -8.72281 -6.87310 -5.73102 -3.01408 0.89132 1.07543 2.39296 2.49040 3.36418 3.45277 3.50493 3.53055 3.58165 4.18564 4.29611 4.37888 4.54573 4.62054 4.65724 4.67888 4.78237 4.79933 4.84471 4.94954 4.96387 4.98903 5.13479 5.15037 5.19410 5.28841 5.29617 5.41287 5.55870 5.57589 5.61934 5.64668 5.70470 5.74664 5.77205 5.93995 6.00483 6.07121 6.12122 6.14790 6.20207 6.22836 6.27075 6.37815 6.45510 6.50778 6.62548 6.65019 6.90912 6.95697 7.20108 7.73348 7.98774 8.46215 9.56970 10.16417 10.50796 11.50079 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.002205 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.567353 B =12694.708617 C =13402.559126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.117 3.883 4 H 0.088 0.912 5 C 0.523 3.477 6 O -0.516 6.516 7 N -0.605 5.605 8 C 0.097 3.903 9 C -0.133 4.133 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.073 0.927 13 C -0.120 4.120 14 C 0.155 3.845 15 N -0.735 5.735 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.117 3.883 25 C -0.117 4.117 26 C -0.081 4.081 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.121 4.121 30 C -0.109 4.109 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.130 0.870 49 H 0.125 0.875 50 H 0.123 0.877 51 H 0.125 0.875 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.999 -3.567 -12.253 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.056 3.944 4 H 0.106 0.894 5 C 0.309 3.691 6 O -0.390 6.390 7 N -0.340 5.340 8 C -0.025 4.025 9 C -0.171 4.171 10 C -0.155 4.155 11 C -0.114 4.114 12 H 0.092 0.908 13 C -0.158 4.158 14 C 0.027 3.973 15 N -0.379 5.379 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.004 4.004 25 C -0.118 4.118 26 C -0.099 4.099 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.139 4.139 30 C -0.126 4.126 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.089 0.911 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.141 0.859 51 H 0.143 0.857 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -29.470 -4.219 -12.294 32.209 hybrid contribution 0.661 0.773 -0.005 1.017 sum -28.809 -3.445 -12.299 31.513 Atomic orbital electron populations 1.22913 0.80399 1.03411 1.00166 1.88066 1.19856 1.24397 1.94719 1.20756 0.94082 0.86950 0.92657 0.89380 1.20059 0.86642 0.83789 0.78647 1.90724 1.60704 1.30025 1.57587 1.48085 1.25693 1.06919 1.53319 1.21993 0.95661 0.83582 1.01307 1.21903 0.96528 0.98595 1.00087 1.21651 0.96478 0.97486 0.99883 1.21441 0.94764 0.94725 1.00496 0.90815 1.21701 0.94237 1.01043 0.98816 1.20656 0.87159 0.95720 0.93719 1.42394 1.13474 1.56801 1.25205 1.19282 0.93349 1.19957 1.04240 0.91205 1.24750 0.98452 1.00800 0.97210 1.69670 1.29127 1.45564 1.13923 0.86118 0.82867 0.79679 0.77556 1.20586 1.21886 1.21864 1.21807 0.83023 1.01547 0.94048 1.19955 1.01870 0.95180 0.94757 1.21083 0.96138 0.99966 0.92754 1.21228 1.00001 0.96462 0.96195 1.21250 0.97917 0.94020 0.99709 1.21097 0.99782 0.99848 0.93159 1.21028 1.00108 0.94907 0.96605 0.93729 0.93671 0.88921 0.91078 0.90042 0.91361 0.90674 0.90541 0.91665 0.91742 0.91684 0.96650 0.96224 0.78330 0.93592 0.88867 0.91112 0.85231 0.85730 0.85878 0.85697 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.35 -3.94 9.57 -54.01 -0.52 -4.46 16 3 C 0.12 1.18 1.99 -29.04 -0.06 1.12 16 4 H 0.09 0.64 6.31 -51.93 -0.33 0.31 16 5 C 0.52 6.89 6.83 -10.99 -0.08 6.82 16 6 O -0.52 -8.95 16.08 -13.22 -0.21 -9.16 16 7 N -0.61 -6.91 2.98 -172.55 -0.51 -7.42 16 8 C 0.10 0.79 6.11 -3.71 -0.02 0.77 16 9 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 10 C -0.12 -1.33 4.95 -26.69 -0.13 -1.46 16 11 C -0.09 -1.25 2.34 -90.50 -0.21 -1.46 16 12 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 13 C -0.12 -1.95 4.80 -26.73 -0.13 -2.08 16 14 C 0.15 3.17 6.02 -4.04 -0.02 3.15 16 15 N -0.73 -19.23 5.60 -59.91 -0.34 -19.56 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 19 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 20 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.12 1.48 5.74 -3.56 -0.02 1.46 16 25 C -0.12 -1.11 4.74 -104.62 -0.50 -1.61 16 26 C -0.08 -0.85 9.29 -39.58 -0.37 -1.22 16 27 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 28 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 29 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 30 C -0.11 -0.80 8.64 -39.58 -0.34 -1.14 16 31 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.52 2.76 -51.93 -0.14 0.37 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.96 6.50 -51.93 -0.34 0.62 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 44 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.09 1.36 7.02 -51.93 -0.36 0.99 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.13 1.52 7.98 -52.49 -0.42 1.10 16 49 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 50 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 51 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 52 H 0.12 0.62 6.46 -52.49 -0.34 0.28 16 LS Contribution 411.33 15.07 6.20 6.20 Total: -1.00 -35.40 411.33 -10.54 -45.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.47 Total: 6.06 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.39 Total: -7.22 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.13 Total: -55.13 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.73 Total: -13.63 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.40 -10.54 -45.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753559378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.895 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds