Wall clock time and date at job start Sat Apr 11 2020 08:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99814 * 2 1 4 4 H 1.08997 * 109.47222 * 30.00065 * 3 2 1 5 5 C 1.50701 * 109.47009 * 149.99747 * 3 2 1 6 6 O 1.21289 * 120.00051 * 22.93755 * 5 3 2 7 7 N 1.34775 * 120.00356 * 202.93999 * 5 3 2 8 8 C 1.46932 * 120.62742 * 355.58854 * 7 5 3 9 9 C 1.53190 * 108.89273 * 233.68570 * 8 7 5 10 10 C 1.53038 * 109.31237 * 305.29310 * 9 8 7 11 11 C 1.53036 * 109.54120 * 61.36369 * 10 9 8 12 12 H 1.09009 * 109.49708 * 58.58627 * 11 10 9 13 13 C 1.53000 * 109.50162 * 178.65034 * 11 10 9 14 14 C 1.53001 * 109.47148 * 295.00319 * 13 11 10 15 15 N 1.46499 * 109.46632 * 179.97438 * 14 13 11 16 16 C 1.36940 * 119.99788 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99517 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31612 * 119.99931 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47013 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46693 * 120.00100 * 20 18 16 23 23 H 1.48492 * 109.47285 * 240.00252 * 20 18 16 24 24 C 1.47198 * 120.81897 * 175.73565 * 7 5 3 25 25 C 1.50698 * 109.47221 * 269.99719 * 3 2 1 26 26 C 1.38232 * 119.99735 * 312.89792 * 25 3 2 27 27 C 1.38241 * 119.99505 * 179.74436 * 26 25 3 28 28 C 1.38238 * 120.00180 * 0.52703 * 27 26 25 29 29 C 1.38235 * 119.99834 * 359.74585 * 28 27 26 30 30 C 1.38238 * 119.99773 * 133.16371 * 25 3 2 31 31 H 1.09003 * 109.47069 * 300.00241 * 1 2 3 32 32 H 1.09000 * 109.46992 * 60.00115 * 1 2 3 33 33 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.58929 * 113.82232 * 8 7 5 35 35 H 1.09002 * 109.58682 * 353.54098 * 8 7 5 36 36 H 1.09003 * 109.50083 * 65.24262 * 9 8 7 37 37 H 1.09005 * 109.49822 * 185.31097 * 9 8 7 38 38 H 1.08998 * 109.46252 * 181.38843 * 10 9 8 39 39 H 1.09008 * 109.45983 * 301.34901 * 10 9 8 40 40 H 1.09001 * 109.46854 * 55.00865 * 13 11 10 41 41 H 1.09005 * 109.47048 * 175.00201 * 13 11 10 42 42 H 1.08994 * 109.47174 * 299.99618 * 14 13 11 43 43 H 1.08995 * 109.47149 * 60.00006 * 14 13 11 44 44 H 0.96995 * 120.00366 * 359.97438 * 15 14 13 45 45 H 0.97001 * 120.00084 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.53344 * 6.53344 * 24 7 5 47 47 H 1.08995 * 109.68051 * 246.22317 * 24 7 5 48 48 H 1.08000 * 120.00297 * 359.97438 * 26 25 3 49 49 H 1.08007 * 119.99762 * 180.28870 * 27 26 25 50 50 H 1.07991 * 120.00295 * 179.76890 * 28 27 26 51 51 H 1.07995 * 120.00153 * 180.02562 * 29 28 27 52 52 H 1.07999 * 120.00089 * 0.02562 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.9444 0.2173 0.8031 7 7 3.8536 2.3899 1.2430 8 6 3.1801 3.6823 1.0563 9 6 4.1826 4.6848 0.4761 10 6 5.4164 4.7471 1.3793 11 6 6.0838 3.3709 1.4298 12 1 6.3624 3.0644 0.4214 13 6 7.3361 3.4423 2.3060 14 6 8.3645 4.3668 1.6513 15 7 9.5632 4.4357 2.4907 16 6 10.6258 5.2086 2.1048 17 1 10.5798 5.7677 1.1820 18 6 11.7614 5.2743 2.9003 19 7 11.8172 4.5933 4.0252 20 14 13.2111 6.3281 2.3736 21 1 12.8996 6.9874 1.0798 22 1 13.4715 7.3632 3.4061 23 1 14.4142 5.4720 2.2163 24 6 5.1028 2.3534 2.0207 25 6 2.2146 1.7644 -1.4208 26 6 2.7971 0.9163 -2.3440 27 6 2.9797 1.3354 -3.6486 28 6 2.5899 2.6065 -4.0273 29 6 2.0126 3.4566 -3.1026 30 6 1.8246 3.0355 -1.7994 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.8140 4.0457 2.0164 35 1 2.3435 3.5623 0.3679 36 1 4.4791 4.3661 -0.5232 37 1 3.7210 5.6708 0.4215 38 1 6.1208 5.4779 0.9821 39 1 5.1159 5.0420 2.3848 40 1 7.0702 3.8323 3.2885 41 1 7.7613 2.4445 2.4141 42 1 8.6303 3.9768 0.6689 43 1 7.9393 5.3646 1.5432 44 1 9.6041 3.9344 3.3200 45 1 12.6109 4.6389 4.5809 46 1 5.5362 1.3547 1.9676 47 1 4.8956 2.6070 3.0603 48 1 3.1061 -0.0750 -2.0470 49 1 3.4306 0.6711 -4.3711 50 1 2.7359 2.9352 -5.0455 51 1 1.7076 4.4494 -3.3985 52 1 1.3739 3.6997 -1.0769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753559378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:47 Heat of formation + Delta-G solvation = -65.336662 kcal Electronic energy + Delta-G solvation = -30947.520892 eV Core-core repulsion = 26911.266812 eV Total energy + Delta-G solvation = -4036.254079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82128 -40.11215 -39.09032 -38.21582 -36.96345 -35.13353 -33.37927 -32.99199 -32.34390 -31.82445 -29.55533 -28.63926 -27.07770 -26.23838 -25.59249 -23.64754 -23.47970 -23.12159 -22.48761 -21.23790 -20.09419 -19.15130 -18.63688 -18.12156 -17.74874 -16.84271 -16.72644 -16.71199 -16.13092 -15.88024 -15.72210 -15.54206 -15.49261 -15.30114 -15.23339 -14.94663 -14.57395 -14.31184 -14.25806 -14.03784 -13.89126 -13.61028 -13.37544 -13.31844 -12.98527 -12.90977 -12.53529 -12.44087 -12.41446 -12.21287 -12.08384 -11.97405 -11.96450 -11.81377 -11.68835 -11.57127 -11.28647 -11.09095 -10.92921 -10.68339 -9.85382 -9.77087 -9.67177 -9.01694 -7.97031 -5.26554 0.26670 0.46093 1.44525 1.45891 1.47517 1.57612 1.64996 2.54686 2.73599 2.89877 3.36488 3.49101 3.55203 3.66720 3.73349 3.79144 3.89634 4.04226 4.07541 4.10195 4.14832 4.26480 4.33675 4.38070 4.46659 4.48899 4.52560 4.54256 4.58069 4.63784 4.67389 4.75589 4.81323 4.82882 4.84308 4.87593 4.98210 5.00917 5.10843 5.13067 5.23326 5.32354 5.43431 5.44090 5.47487 5.47884 5.52317 5.54632 5.59506 5.98758 6.04389 6.25673 6.33109 7.03680 7.31124 8.07400 8.30646 9.27011 Molecular weight = 346.20amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.002205 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.567353 B =12694.708617 C =13402.559126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.124 3.876 4 H 0.123 0.877 5 C 0.513 3.487 6 O -0.573 6.573 7 N -0.602 5.602 8 C 0.092 3.908 9 C -0.126 4.126 10 C -0.116 4.116 11 C -0.083 4.083 12 H 0.055 0.945 13 C -0.107 4.107 14 C 0.156 3.844 15 N -0.750 5.750 16 C -0.246 4.246 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.120 3.880 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.134 4.134 28 C -0.115 4.115 29 C -0.119 4.119 30 C -0.104 4.104 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.007 0.993 43 H 0.032 0.968 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.129 0.871 50 H 0.144 0.856 51 H 0.155 0.845 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.596 -0.440 -13.260 35.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.306 6.306 3 C 0.063 3.937 4 H 0.141 0.859 5 C 0.301 3.699 6 O -0.452 6.452 7 N -0.335 5.335 8 C -0.029 4.029 9 C -0.164 4.164 10 C -0.154 4.154 11 C -0.102 4.102 12 H 0.074 0.926 13 C -0.146 4.146 14 C 0.029 3.971 15 N -0.392 5.392 16 C -0.378 4.378 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.221 1.221 24 C -0.002 4.002 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.152 4.152 28 C -0.133 4.133 29 C -0.136 4.136 30 C -0.121 4.121 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.147 0.853 50 H 0.162 0.838 51 H 0.173 0.827 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -32.119 -1.051 -13.339 34.795 hybrid contribution 1.430 -0.221 0.256 1.469 sum -30.689 -1.272 -13.083 33.386 Atomic orbital electron populations 1.23117 0.78344 1.04366 1.01537 1.88033 1.22201 1.25479 1.94905 1.20772 0.92621 0.87384 0.92957 0.85913 1.20814 0.87646 0.83300 0.78111 1.90690 1.62475 1.32232 1.59815 1.48189 1.24988 1.08045 1.52257 1.22322 0.95793 0.81450 1.03309 1.21875 0.95439 1.00450 0.98613 1.21636 0.97360 0.95108 1.01254 1.21278 0.93680 0.96683 0.98602 0.92608 1.21557 0.94543 0.99112 0.99375 1.20801 0.86315 0.97154 0.92789 1.42647 1.14750 1.56359 1.25464 1.19688 0.94172 1.19728 1.04223 0.90661 1.25636 1.01388 1.02577 0.97473 1.69830 1.29803 1.47360 1.15173 0.85031 0.78964 0.77811 0.77705 1.18933 1.21667 1.22058 1.21623 0.83761 0.99708 0.95108 1.19994 1.02545 0.96121 0.94099 1.21025 0.98085 0.99441 0.94184 1.21378 1.00531 0.97606 0.95713 1.21568 0.97321 0.93351 1.01072 1.21506 0.98497 1.00859 0.92767 1.21355 0.99196 0.94028 0.97569 0.91858 0.92595 0.88402 0.88590 0.87726 0.92525 0.87420 0.91772 0.90536 0.91177 0.93218 0.97464 0.95014 0.79546 0.93932 0.91762 0.89536 0.88207 0.85259 0.83835 0.82719 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.81 113.37 1.23 1.50 16 2 O -0.39 -8.72 9.57 -131.03 -1.25 -9.98 16 3 C 0.12 2.35 1.99 29.10 0.06 2.41 16 4 H 0.12 1.35 6.31 -2.39 -0.02 1.33 16 5 C 0.51 13.66 6.83 87.66 0.60 14.26 16 6 O -0.57 -21.32 16.08 14.89 0.24 -21.08 16 7 N -0.60 -13.04 2.98 -818.20 -2.44 -15.48 16 8 C 0.09 1.14 6.11 86.36 0.53 1.67 16 9 C -0.13 -1.74 6.08 30.67 0.19 -1.56 16 10 C -0.12 -2.36 4.95 30.62 0.15 -2.21 16 11 C -0.08 -2.17 2.34 -10.72 -0.03 -2.20 16 12 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 13 C -0.11 -3.56 4.80 30.59 0.15 -3.42 16 14 C 0.16 6.43 6.02 86.38 0.52 6.95 16 15 N -0.75 -39.85 5.60 -343.46 -1.92 -41.78 16 16 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 19 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 20 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 24 C 0.12 3.05 5.74 86.31 0.50 3.55 16 25 C -0.13 -2.25 4.74 -19.87 -0.09 -2.35 16 26 C -0.11 -2.39 9.29 22.27 0.21 -2.19 16 27 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 28 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 29 C -0.12 -1.24 10.05 22.27 0.22 -1.02 16 30 C -0.10 -1.16 8.64 22.27 0.19 -0.97 16 31 H 0.06 0.53 8.09 -2.39 -0.02 0.52 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.82 2.76 -2.39 -0.01 0.81 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 1.48 6.50 -2.39 -0.02 1.47 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.03 1.26 6.54 -2.39 -0.02 1.24 16 44 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 45 H 0.25 15.22 8.31 -92.71 -0.77 14.44 16 46 H 0.06 2.01 7.02 -2.39 -0.02 2.00 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.10 2.69 7.98 -2.91 -0.02 2.66 16 49 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 50 H 0.14 1.23 8.06 -2.92 -0.02 1.21 16 51 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 52 H 0.16 0.65 6.46 -2.91 -0.02 0.63 16 Total: -1.00 -80.76 411.33 3.30 -77.46 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.20 Total: 29.12 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.17 Total: -6.59 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.08 Total: -117.95 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.02 Total: -31.06 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -80.76 3.30 -77.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753559378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.123 kcal (2) G-P(sol) polarization free energy of solvation -80.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds