Wall clock time and date at job start Sat Apr 11 2020 08:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00028 * 2 1 4 4 H 1.48509 * 109.47269 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 119.99872 * 3 2 1 6 6 H 1.48498 * 109.47325 * 240.00014 * 3 2 1 7 7 C 1.38814 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46800 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47515 * 295.00017 * 11 10 9 13 13 N 1.46494 * 109.47295 * 55.00584 * 11 10 9 14 14 C 1.34777 * 120.00339 * 235.23624 * 13 11 10 15 15 O 1.21282 * 119.99718 * 5.01869 * 14 13 11 16 16 C 1.50696 * 120.00554 * 185.02243 * 14 13 11 17 17 H 1.09002 * 109.50077 * 59.92907 * 16 14 13 18 18 C 1.53112 * 109.50258 * 179.97438 * 16 14 13 19 19 C 1.53278 * 109.71705 * 189.85567 * 18 16 14 20 20 N 1.46470 * 108.69598 * 309.26467 * 19 18 16 21 21 C 1.34412 * 128.44216 * 197.27556 * 20 19 18 22 22 N 1.30781 * 108.55383 * 179.87596 * 21 20 19 23 23 C 1.34432 * 109.32168 * 0.04173 * 22 21 20 24 24 C 1.33859 * 107.79583 * 0.02562 * 23 22 21 25 25 C 1.50712 * 128.67633 * 179.85804 * 24 23 22 26 26 C 1.53004 * 109.47082 * 175.00221 * 11 10 9 27 27 C 1.54261 * 110.03360 * 295.34243 * 26 11 10 28 28 C 1.54967 * 104.15891 * 217.13353 * 27 26 11 29 29 C 1.54885 * 102.77935 * 37.88753 * 28 27 26 30 30 C 1.53873 * 110.03598 * 178.11838 * 26 11 10 31 31 H 0.96995 * 119.99827 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00005 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.47528 * 300.00568 * 10 9 7 34 34 H 1.09003 * 109.47120 * 60.00842 * 10 9 7 35 35 H 0.97001 * 120.00191 * 55.23442 * 13 11 10 36 36 H 1.09000 * 109.43162 * 309.93067 * 18 16 14 37 37 H 1.09001 * 109.42900 * 69.77843 * 18 16 14 38 38 H 1.09005 * 109.59722 * 69.02787 * 19 18 16 39 39 H 1.09002 * 109.60355 * 189.50038 * 19 18 16 40 40 H 1.07994 * 125.72325 * 359.87210 * 21 20 19 41 41 H 1.07999 * 126.09869 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.74221 * 76.21383 * 25 24 23 43 43 H 1.08998 * 109.74462 * 315.48789 * 25 24 23 44 44 H 1.09011 * 110.01202 * 56.72742 * 26 11 10 45 45 H 1.09007 * 110.48451 * 335.78040 * 27 26 11 46 46 H 1.09004 * 110.49345 * 98.42127 * 27 26 11 47 47 H 1.08995 * 110.71900 * 279.57197 * 28 27 26 48 48 H 1.09009 * 110.76291 * 156.22044 * 28 27 26 49 49 H 1.08992 * 110.48747 * 203.40918 * 29 28 27 50 50 H 1.09001 * 110.59898 * 80.81263 * 29 28 27 51 51 H 1.08994 * 110.03395 * 238.57371 * 30 26 11 52 52 H 1.09003 * 110.02901 * 359.95337 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0638 -4.8196 -0.0021 12 1 0.4979 -4.8142 0.9295 13 7 0.1440 -4.6753 -1.1331 14 6 -1.1870 -4.6585 -0.9214 15 8 -1.6211 -4.6711 0.2110 16 6 -2.1357 -4.6242 -2.0917 17 1 -1.9785 -5.5055 -2.7136 18 6 -3.5787 -4.6114 -1.5797 19 6 -4.5447 -4.8238 -2.7506 20 7 -4.2056 -3.8784 -3.8166 21 6 -4.9557 -3.4958 -4.8643 22 7 -4.2732 -2.6337 -5.5721 23 6 -3.0715 -2.4412 -5.0009 24 6 -3.0112 -3.2096 -3.9064 25 6 -1.8801 -3.3587 -2.9216 26 6 1.8246 -6.1411 -0.1289 27 6 2.5367 -6.2118 -1.4955 28 6 2.4090 -7.6987 -1.9130 29 6 0.9871 -8.0708 -1.4246 30 6 0.8400 -7.3227 -0.0834 31 1 -0.4849 -0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6841 -3.7141 -0.8920 34 1 2.6853 -3.7150 0.8879 35 1 0.4928 -4.5918 -2.0343 36 1 -3.7117 -5.4104 -0.8503 37 1 -3.7872 -3.6516 -1.1071 38 1 -4.4495 -5.8440 -3.1227 39 1 -5.5675 -4.6477 -2.4175 40 1 -5.9546 -3.8423 -5.0845 41 1 -2.2935 -1.7846 -5.3613 42 1 -1.8464 -2.4892 -2.2652 43 1 -0.9355 -3.4534 -3.4573 44 1 2.5532 -6.2309 0.6769 45 1 2.0373 -5.5681 -2.2197 46 1 3.5853 -5.9318 -1.3943 47 1 3.1614 -8.3063 -1.4104 48 1 2.4856 -7.8041 -2.9953 49 1 0.9056 -9.1469 -1.2720 50 1 0.2355 -7.7292 -2.1363 51 1 1.0912 -7.9864 0.7439 52 1 -0.1798 -6.9547 0.0299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278249683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:10 Heat of formation + Delta-G solvation = -1.831322 kcal Electronic energy + Delta-G solvation = -32234.306141 eV Core-core repulsion = 28233.098611 eV Total energy + Delta-G solvation = -4001.207530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31616 -41.44400 -39.42409 -37.30823 -36.96913 -35.33911 -34.22568 -32.87837 -31.52182 -31.02903 -29.63015 -28.92479 -27.55712 -25.82147 -25.18208 -24.10638 -22.95455 -22.44941 -21.81669 -21.03540 -20.40192 -20.09511 -19.34273 -18.29171 -18.13453 -17.40764 -17.03814 -16.73688 -16.23039 -16.08015 -15.84047 -15.60030 -15.22280 -15.12107 -14.99010 -14.91448 -14.77785 -14.45780 -14.19607 -14.11449 -14.02850 -13.77745 -13.24298 -13.02789 -12.91755 -12.66172 -12.59014 -12.24410 -12.12796 -12.08669 -11.93720 -11.89639 -11.84470 -11.59623 -11.49525 -11.41780 -11.26380 -11.09541 -10.95355 -10.74247 -10.45632 -10.00814 -9.35493 -9.10257 -8.38645 -5.32608 1.07995 1.56354 1.57101 1.66347 1.82524 1.86254 2.14162 2.17376 2.70180 3.30572 3.40913 3.47948 3.50930 3.54263 3.67907 3.70569 3.78063 3.90072 3.99294 4.03797 4.12195 4.17293 4.24116 4.32254 4.41100 4.46843 4.50258 4.57384 4.62016 4.65369 4.70468 4.73255 4.78226 4.81309 4.85045 4.86449 4.88447 5.01433 5.07154 5.10004 5.12185 5.27365 5.34648 5.35933 5.42854 5.50894 5.56053 5.60578 5.71760 6.33227 6.47528 6.51095 7.08587 7.08816 7.22514 8.00197 8.11876 9.11683 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006436 B = 0.004908 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4349.596649 B = 5704.172588 C = 8898.443780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.102 4.102 3 Si 1.126 2.874 4 H -0.296 1.296 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.067 0.933 9 N -0.751 5.751 10 C 0.148 3.852 11 C 0.148 3.852 12 H 0.067 0.933 13 N -0.696 5.696 14 C 0.520 3.480 15 O -0.581 6.581 16 C -0.095 4.095 17 H 0.130 0.870 18 C -0.113 4.113 19 C 0.109 3.891 20 N -0.455 5.455 21 C 0.191 3.809 22 N -0.537 5.537 23 C -0.047 4.047 24 C -0.023 4.023 25 C -0.029 4.029 26 C -0.092 4.092 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.116 4.116 30 C -0.114 4.114 31 H 0.239 0.761 32 H 0.359 0.641 33 H 0.038 0.962 34 H 0.022 0.978 35 H 0.407 0.593 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.245 0.755 41 H 0.166 0.834 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -20.793 -8.195 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.294 4.294 3 Si 0.951 3.049 4 H -0.223 1.223 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.085 0.915 9 N -0.396 5.396 10 C 0.020 3.980 11 C 0.043 3.957 12 H 0.085 0.915 13 N -0.347 5.347 14 C 0.307 3.693 15 O -0.460 6.460 16 C -0.117 4.117 17 H 0.148 0.852 18 C -0.152 4.152 19 C -0.012 4.012 20 N -0.139 5.139 21 C -0.092 4.092 22 N -0.256 5.256 23 C -0.193 4.193 24 C -0.138 4.138 25 C -0.068 4.068 26 C -0.112 4.112 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.153 4.153 30 C -0.152 4.152 31 H 0.050 0.950 32 H 0.191 0.809 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.244 0.756 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.261 0.739 41 H 0.183 0.817 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.297 -18.923 -7.987 20.984 hybrid contribution 0.324 -1.265 0.824 1.544 sum -3.973 -20.188 -7.163 21.786 Atomic orbital electron populations 1.71006 1.07227 1.27523 1.56232 1.27140 0.97018 1.04566 1.00658 0.82654 0.73375 0.71695 0.77178 1.22259 1.20606 1.20013 1.20366 0.92303 0.87064 1.46611 0.91470 1.42491 1.04724 1.01762 1.90597 1.21120 0.93746 0.84528 0.98557 1.21110 0.90156 0.94430 0.90021 0.91474 1.45764 1.05237 1.72857 1.10806 1.20810 0.83455 0.74514 0.90476 1.90689 1.77888 1.51661 1.25804 1.21370 0.94858 1.00625 0.94814 0.85176 1.21657 0.91835 1.04018 0.97654 1.22281 1.00950 0.93144 0.84825 1.45631 1.12405 1.33918 1.21949 1.25550 1.00216 0.97287 0.86115 1.70453 1.05713 1.18401 1.31027 1.21995 0.97153 1.04107 0.96055 1.20942 0.90266 1.01835 1.00727 1.20021 0.95642 0.96720 0.94379 1.22060 0.97115 0.92355 0.99647 1.22421 1.00179 0.97674 0.95200 1.22472 0.96780 0.94917 1.01188 1.22294 0.97337 0.99939 0.95732 1.22104 0.98218 0.96025 0.98869 0.95049 0.80891 0.94444 0.96025 0.75596 0.87677 0.93152 0.86322 0.86149 0.73902 0.81675 0.92827 0.88130 0.89793 0.91937 0.91305 0.90886 0.90590 0.90834 0.91839 0.91505 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.47 13.70 21.65 0.30 -62.18 16 2 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16 3 Si 1.13 52.92 29.92 68.60 2.05 54.97 16 4 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.33 -18.83 9.99 84.03 0.84 -17.99 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.75 -38.18 5.43 -343.46 -1.87 -40.05 16 10 C 0.15 5.73 5.85 86.38 0.51 6.24 16 11 C 0.15 4.65 2.03 44.99 0.09 4.74 16 12 H 0.07 2.57 6.91 -2.39 -0.02 2.55 16 13 N -0.70 -19.68 3.60 -442.54 -1.59 -21.27 16 14 C 0.52 15.83 6.31 87.66 0.55 16.38 16 15 O -0.58 -22.57 15.13 -3.04 -0.05 -22.62 16 16 C -0.10 -2.19 2.55 -11.34 -0.03 -2.22 16 17 H 0.13 2.15 8.12 -2.39 -0.02 2.14 16 18 C -0.11 -2.40 4.66 30.72 0.14 -2.25 16 19 C 0.11 1.51 7.00 86.48 0.61 2.12 16 20 N -0.46 -9.65 3.13 -514.86 -1.61 -11.26 16 21 C 0.19 4.08 12.66 180.38 2.28 6.36 16 22 N -0.54 -15.87 11.27 -200.97 -2.26 -18.14 16 23 C -0.05 -1.41 11.84 83.30 0.99 -0.43 16 24 C -0.02 -0.62 6.57 40.73 0.27 -0.35 16 25 C -0.03 -0.79 5.42 30.01 0.16 -0.63 16 26 C -0.09 -2.11 2.79 -10.07 -0.03 -2.13 16 27 C -0.12 -2.24 5.19 31.69 0.16 -2.08 16 28 C -0.12 -1.72 6.91 31.91 0.22 -1.50 16 29 C -0.12 -1.81 6.83 31.67 0.22 -1.59 16 30 C -0.11 -2.35 6.21 31.32 0.19 -2.15 16 31 H 0.24 15.63 6.77 -92.71 -0.63 15.00 16 32 H 0.36 19.58 6.15 -92.71 -0.57 19.01 16 33 H 0.04 1.38 7.24 -2.39 -0.02 1.36 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.41 10.05 6.73 -92.71 -0.62 9.43 16 36 H 0.10 2.07 7.77 -2.39 -0.02 2.05 16 37 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 38 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.25 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.17 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 43 H 0.10 2.48 7.86 -2.39 -0.02 2.46 16 44 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.06 1.24 6.04 -2.38 -0.01 1.23 16 46 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.05 1.15 6.71 -2.39 -0.02 1.13 16 Total: -1.00 -80.39 403.70 2.49 -77.90 By element: Atomic # 1 Polarization: 45.82 SS G_CDS: -0.12 Total: 45.69 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 7.64 Total: -3.06 kcal Atomic # 7 Polarization: -145.85 SS G_CDS: -7.04 Total: -152.89 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 2.05 Total: 54.97 kcal Total: -80.39 2.49 -77.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278249683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.073 kcal (2) G-P(sol) polarization free energy of solvation -80.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds