Wall clock time and date at job start Sat Apr 11 2020 08:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48508 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47419 * 299.99920 * 3 2 1 6 6 H 1.48494 * 109.47155 * 60.00518 * 3 2 1 7 7 C 1.38814 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99833 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47130 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46924 * 65.00213 * 11 10 9 13 13 N 1.46501 * 109.46847 * 305.00328 * 11 10 9 14 14 C 1.34774 * 119.99726 * 124.72224 * 13 11 10 15 15 O 1.21277 * 120.00294 * 354.76700 * 14 13 11 16 16 C 1.50698 * 120.00156 * 174.76229 * 14 13 11 17 17 H 1.09011 * 109.49235 * 59.93339 * 16 14 13 18 18 C 1.53113 * 109.50297 * 179.97438 * 16 14 13 19 19 C 1.53282 * 109.70395 * 189.86732 * 18 16 14 20 20 N 1.46462 * 108.69581 * 309.22919 * 19 18 16 21 21 C 1.34405 * 128.44458 * 197.35058 * 20 19 18 22 22 N 1.30786 * 108.55244 * 179.81384 * 21 20 19 23 23 C 1.34428 * 109.32409 * 0.05519 * 22 21 20 24 24 C 1.33861 * 107.79633 * 359.97438 * 23 22 21 25 25 C 1.50708 * 128.68148 * 179.67988 * 24 23 22 26 26 C 1.52998 * 109.46660 * 185.00100 * 11 10 9 27 27 C 1.54257 * 110.03746 * 301.57973 * 26 11 10 28 28 C 1.54894 * 104.19779 * 217.10958 * 27 26 11 29 29 C 1.54884 * 102.74642 * 37.94094 * 28 27 26 30 30 C 1.53873 * 110.02777 * 184.41214 * 26 11 10 31 31 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00360 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46723 * 60.00242 * 10 9 7 34 34 H 1.09000 * 109.47048 * 300.00506 * 10 9 7 35 35 H 0.96996 * 120.00237 * 304.71852 * 13 11 10 36 36 H 1.09004 * 109.42912 * 69.80177 * 18 16 14 37 37 H 1.09002 * 109.43442 * 309.94642 * 18 16 14 38 38 H 1.09006 * 109.59807 * 189.46023 * 19 18 16 39 39 H 1.09000 * 109.59953 * 68.99423 * 19 18 16 40 40 H 1.07993 * 125.72821 * 359.77743 * 21 20 19 41 41 H 1.07999 * 126.10647 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.74727 * 315.63134 * 25 24 23 43 43 H 1.08999 * 109.74646 * 76.34749 * 25 24 23 44 44 H 1.08997 * 110.01875 * 63.02661 * 26 11 10 45 45 H 1.09002 * 110.48580 * 335.78415 * 27 26 11 46 46 H 1.08995 * 110.48840 * 98.42830 * 27 26 11 47 47 H 1.09002 * 110.75210 * 279.62365 * 28 27 26 48 48 H 1.09005 * 110.75216 * 156.25872 * 28 27 26 49 49 H 1.08999 * 110.48689 * 203.37739 * 29 28 27 50 50 H 1.09003 * 110.48837 * 80.73868 * 29 28 27 51 51 H 1.09007 * 110.03541 * 238.57083 * 30 26 11 52 52 H 1.08996 * 110.03665 * 359.95722 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 6 1.0638 -4.8198 -0.0021 12 1 0.4973 -4.8131 -0.9332 13 7 0.1447 -4.6768 1.1298 14 6 -1.1863 -4.6589 0.9189 15 8 -1.6210 -4.6654 -0.2133 16 6 -2.1345 -4.6308 2.0899 17 1 -1.9496 -3.7372 2.6862 18 6 -3.5776 -4.6141 1.5787 19 6 -4.5353 -4.3386 2.7435 20 7 -4.2244 -5.2636 3.8356 21 6 -4.9854 -5.5938 4.8932 22 7 -4.3293 -6.4571 5.6245 23 6 -3.1346 -6.7020 5.0592 24 6 -3.0514 -5.9669 3.9436 25 6 -1.9156 -5.8772 2.9571 26 6 1.8248 -6.1412 0.1225 27 6 2.8255 -6.2867 -1.0424 28 6 2.7861 -7.7955 -1.3908 29 6 1.2882 -8.1479 -1.2151 30 6 0.8473 -7.3246 0.0127 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8878 34 1 2.6841 -3.7142 -0.8921 35 1 0.4941 -4.5950 2.0309 36 1 -3.8161 -5.5803 1.1340 37 1 -3.6870 -3.8327 0.8267 38 1 -5.5634 -4.4921 2.4156 39 1 -4.4079 -3.3118 3.0865 40 1 -5.9726 -5.2103 5.1040 41 1 -2.3772 -7.3728 5.4370 42 1 -0.9691 -5.7964 3.4916 43 1 -1.9069 -6.7644 2.3238 44 1 2.3520 -6.1798 1.0757 45 1 2.5061 -5.6896 -1.8965 46 1 3.8262 -5.9946 -0.7244 47 1 3.4017 -8.3682 -0.6971 48 1 3.1043 -7.9627 -2.4199 49 1 1.1670 -9.2139 -1.0231 50 1 0.7205 -7.8513 -2.0971 51 1 0.9009 -7.9379 0.9123 52 1 -0.1692 -6.9574 -0.1285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278249684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:14 Heat of formation + Delta-G solvation = 14.053689 kcal Electronic energy + Delta-G solvation = -31648.655432 eV Core-core repulsion = 27648.136728 eV Total energy + Delta-G solvation = -4000.518704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43066 -40.04886 -38.30605 -36.29364 -35.28199 -33.69191 -33.15327 -31.19732 -30.57207 -29.72212 -28.63541 -28.00887 -26.20876 -24.83863 -23.62000 -22.72969 -21.60643 -21.27681 -20.47961 -20.16176 -19.61703 -19.08559 -17.33214 -17.21040 -16.88461 -16.21014 -15.78693 -15.39343 -15.25103 -14.83149 -14.52427 -14.21149 -14.16425 -13.89266 -13.75906 -13.65784 -13.31375 -13.24935 -13.17476 -13.05284 -12.58312 -12.19430 -12.12816 -11.86789 -11.42483 -11.35949 -11.22783 -11.15117 -11.04966 -10.98998 -10.91040 -10.85055 -10.63595 -10.50169 -10.30163 -10.09412 -10.04405 -9.75205 -9.61247 -9.46768 -8.91176 -8.61790 -8.43776 -6.93686 -5.78226 -3.07032 1.96059 2.67452 2.89790 3.07380 3.37121 3.40752 3.46377 3.48439 4.26836 4.43595 4.47386 4.54232 4.57370 4.66071 4.69593 4.70951 4.79918 4.97368 5.02295 5.10773 5.22240 5.26464 5.35756 5.49166 5.50170 5.53446 5.55433 5.55632 5.60944 5.66787 5.69387 5.72549 5.86254 5.87966 5.90410 5.97829 6.01003 6.02174 6.11800 6.26604 6.27232 6.31237 6.36716 6.47109 6.50197 6.63968 6.68083 6.95768 7.10806 7.67379 7.80471 7.97048 8.39996 8.52540 9.51798 10.10069 10.45283 11.44137 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007222 B = 0.003902 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.852298 B = 7174.907496 C =10228.569599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.138 3.862 12 H 0.100 0.900 13 N -0.708 5.708 14 C 0.527 3.473 15 O -0.538 6.538 16 C -0.112 4.112 17 H 0.104 0.896 18 C -0.113 4.113 19 C 0.102 3.898 20 N -0.453 5.453 21 C 0.181 3.819 22 N -0.499 5.499 23 C -0.026 4.026 24 C -0.018 4.018 25 C -0.033 4.033 26 C -0.096 4.096 27 C -0.117 4.117 28 C -0.124 4.124 29 C -0.124 4.124 30 C -0.117 4.117 31 H 0.253 0.747 32 H 0.386 0.614 33 H 0.019 0.981 34 H 0.031 0.969 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.203 0.797 41 H 0.168 0.832 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.058 0.942 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -16.382 4.854 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.014 3.986 11 C 0.033 3.967 12 H 0.118 0.882 13 N -0.357 5.357 14 C 0.313 3.687 15 O -0.414 6.414 16 C -0.134 4.134 17 H 0.122 0.878 18 C -0.151 4.151 19 C -0.020 4.020 20 N -0.137 5.137 21 C -0.102 4.102 22 N -0.218 5.218 23 C -0.173 4.173 24 C -0.133 4.133 25 C -0.072 4.072 26 C -0.116 4.116 27 C -0.155 4.155 28 C -0.162 4.162 29 C -0.162 4.162 30 C -0.155 4.155 31 H 0.063 0.937 32 H 0.220 0.780 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.232 0.768 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.220 0.780 41 H 0.185 0.815 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.799 -16.517 4.648 17.817 hybrid contribution 0.559 1.602 -0.205 1.709 sum -4.240 -14.915 4.443 16.130 Atomic orbital electron populations 1.69690 1.05074 1.25389 1.57749 1.24732 0.95486 0.97616 1.03060 0.86147 0.78803 0.84247 0.77171 1.20573 1.21882 1.21941 1.19263 0.90990 0.84184 1.42616 0.91227 1.42312 1.06008 0.99660 1.89335 1.21022 0.93247 0.85880 0.98413 1.21456 0.90767 0.93690 0.90815 0.88202 1.45772 1.05526 1.73691 1.10743 1.20128 0.82975 0.75572 0.90031 1.90705 1.77178 1.49596 1.23940 1.21390 0.95224 1.00510 0.96244 0.87805 1.21672 0.91757 1.05061 0.96600 1.22115 1.00858 0.93060 0.85984 1.45504 1.14123 1.33666 1.20395 1.24762 0.99391 0.99485 0.86512 1.70484 1.06059 1.15904 1.29325 1.21800 0.96779 1.04094 0.94653 1.21051 0.90158 1.01058 1.01033 1.20146 0.95063 0.97631 0.94340 1.22086 0.95973 0.94223 0.99360 1.22397 0.98895 0.96020 0.98159 1.22495 0.96371 0.96379 1.00929 1.22350 0.96202 0.99157 0.98499 1.22161 0.99578 0.96031 0.97713 0.93666 0.78001 0.96316 0.95174 0.76797 0.90368 0.87889 0.88664 0.89172 0.78034 0.81479 0.88925 0.89651 0.90883 0.90954 0.91412 0.91807 0.91842 0.92215 0.91724 0.92319 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.05 5.43 -59.90 -0.33 -18.37 16 10 C 0.14 2.71 5.59 -4.04 -0.02 2.69 16 11 C 0.14 2.12 1.71 -67.93 -0.12 2.01 16 12 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 13 N -0.71 -10.04 3.91 -53.81 -0.21 -10.25 16 14 C 0.53 7.97 6.42 -10.99 -0.07 7.90 16 15 O -0.54 -10.17 15.14 5.56 0.08 -10.08 16 16 C -0.11 -1.33 2.54 -91.50 -0.23 -1.56 16 17 H 0.10 1.30 8.12 -51.92 -0.42 0.88 16 18 C -0.11 -1.25 4.66 -26.53 -0.12 -1.37 16 19 C 0.10 0.90 7.00 -3.92 -0.03 0.88 16 20 N -0.45 -4.81 3.13 -114.09 -0.36 -5.17 16 21 C 0.18 1.95 12.66 -90.71 -1.15 0.80 16 22 N -0.50 -6.61 11.27 -14.87 -0.17 -6.78 16 23 C -0.03 -0.31 11.84 -17.95 -0.21 -0.52 16 24 C -0.02 -0.21 6.57 -81.73 -0.54 -0.74 16 25 C -0.03 -0.33 5.50 -27.67 -0.15 -0.48 16 26 C -0.10 -1.15 2.71 -89.51 -0.24 -1.39 16 27 C -0.12 -1.34 5.32 -25.07 -0.13 -1.48 16 28 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 29 C -0.12 -1.29 6.83 -25.08 -0.17 -1.46 16 30 C -0.12 -1.30 6.24 -25.61 -0.16 -1.46 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 10.32 7.31 -40.82 -0.30 10.02 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.59 7.16 -51.93 -0.37 0.21 16 35 H 0.40 4.94 8.78 -40.82 -0.36 4.58 16 36 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 37 H 0.10 1.29 7.77 -51.93 -0.40 0.89 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 43 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 52 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 LS Contribution 409.26 15.07 6.17 6.17 Total: -1.00 -34.39 409.26 -11.72 -46.11 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -8.84 Total: 13.20 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.77 Total: -4.81 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.34 Total: -67.83 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.39 -11.72 -46.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278249684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.163 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds