Wall clock time and date at job start Sat Apr 11 2020 08:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48508 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47419 * 299.99920 * 3 2 1 6 6 H 1.48494 * 109.47155 * 60.00518 * 3 2 1 7 7 C 1.38814 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99952 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99833 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47130 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46924 * 65.00213 * 11 10 9 13 13 N 1.46501 * 109.46847 * 305.00328 * 11 10 9 14 14 C 1.34774 * 119.99726 * 124.72224 * 13 11 10 15 15 O 1.21277 * 120.00294 * 354.76700 * 14 13 11 16 16 C 1.50698 * 120.00156 * 174.76229 * 14 13 11 17 17 H 1.09011 * 109.49235 * 59.93339 * 16 14 13 18 18 C 1.53113 * 109.50297 * 179.97438 * 16 14 13 19 19 C 1.53282 * 109.70395 * 189.86732 * 18 16 14 20 20 N 1.46462 * 108.69581 * 309.22919 * 19 18 16 21 21 C 1.34405 * 128.44458 * 197.35058 * 20 19 18 22 22 N 1.30786 * 108.55244 * 179.81384 * 21 20 19 23 23 C 1.34428 * 109.32409 * 0.05519 * 22 21 20 24 24 C 1.33861 * 107.79633 * 359.97438 * 23 22 21 25 25 C 1.50708 * 128.68148 * 179.67988 * 24 23 22 26 26 C 1.52998 * 109.46660 * 185.00100 * 11 10 9 27 27 C 1.54257 * 110.03746 * 301.57973 * 26 11 10 28 28 C 1.54894 * 104.19779 * 217.10958 * 27 26 11 29 29 C 1.54884 * 102.74642 * 37.94094 * 28 27 26 30 30 C 1.53873 * 110.02777 * 184.41214 * 26 11 10 31 31 H 0.96996 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00360 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46723 * 60.00242 * 10 9 7 34 34 H 1.09000 * 109.47048 * 300.00506 * 10 9 7 35 35 H 0.96996 * 120.00237 * 304.71852 * 13 11 10 36 36 H 1.09004 * 109.42912 * 69.80177 * 18 16 14 37 37 H 1.09002 * 109.43442 * 309.94642 * 18 16 14 38 38 H 1.09006 * 109.59807 * 189.46023 * 19 18 16 39 39 H 1.09000 * 109.59953 * 68.99423 * 19 18 16 40 40 H 1.07993 * 125.72821 * 359.77743 * 21 20 19 41 41 H 1.07999 * 126.10647 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.74727 * 315.63134 * 25 24 23 43 43 H 1.08999 * 109.74646 * 76.34749 * 25 24 23 44 44 H 1.08997 * 110.01875 * 63.02661 * 26 11 10 45 45 H 1.09002 * 110.48580 * 335.78415 * 27 26 11 46 46 H 1.08995 * 110.48840 * 98.42830 * 27 26 11 47 47 H 1.09002 * 110.75210 * 279.62365 * 28 27 26 48 48 H 1.09005 * 110.75216 * 156.25872 * 28 27 26 49 49 H 1.08999 * 110.48689 * 203.37739 * 29 28 27 50 50 H 1.09003 * 110.48837 * 80.73868 * 29 28 27 51 51 H 1.09007 * 110.03541 * 238.57083 * 30 26 11 52 52 H 1.08996 * 110.03665 * 359.95722 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 6 1.0638 -4.8198 -0.0021 12 1 0.4973 -4.8131 -0.9332 13 7 0.1447 -4.6768 1.1298 14 6 -1.1863 -4.6589 0.9189 15 8 -1.6210 -4.6654 -0.2133 16 6 -2.1345 -4.6308 2.0899 17 1 -1.9496 -3.7372 2.6862 18 6 -3.5776 -4.6141 1.5787 19 6 -4.5353 -4.3386 2.7435 20 7 -4.2244 -5.2636 3.8356 21 6 -4.9854 -5.5938 4.8932 22 7 -4.3293 -6.4571 5.6245 23 6 -3.1346 -6.7020 5.0592 24 6 -3.0514 -5.9669 3.9436 25 6 -1.9156 -5.8772 2.9571 26 6 1.8248 -6.1412 0.1225 27 6 2.8255 -6.2867 -1.0424 28 6 2.7861 -7.7955 -1.3908 29 6 1.2882 -8.1479 -1.2151 30 6 0.8473 -7.3246 0.0127 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8878 34 1 2.6841 -3.7142 -0.8921 35 1 0.4941 -4.5950 2.0309 36 1 -3.8161 -5.5803 1.1340 37 1 -3.6870 -3.8327 0.8267 38 1 -5.5634 -4.4921 2.4156 39 1 -4.4079 -3.3118 3.0865 40 1 -5.9726 -5.2103 5.1040 41 1 -2.3772 -7.3728 5.4370 42 1 -0.9691 -5.7964 3.4916 43 1 -1.9069 -6.7644 2.3238 44 1 2.3520 -6.1798 1.0757 45 1 2.5061 -5.6896 -1.8965 46 1 3.8262 -5.9946 -0.7244 47 1 3.4017 -8.3682 -0.6971 48 1 3.1043 -7.9627 -2.4199 49 1 1.1670 -9.2139 -1.0231 50 1 0.7205 -7.8513 -2.0971 51 1 0.9009 -7.9379 0.9123 52 1 -0.1692 -6.9574 -0.1285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278249684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:13 Heat of formation + Delta-G solvation = -6.078754 kcal Electronic energy + Delta-G solvation = -31649.528440 eV Core-core repulsion = 27648.136728 eV Total energy + Delta-G solvation = -4001.391712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.26867 -41.24800 -39.34706 -37.27506 -36.77167 -35.26619 -34.15364 -32.92390 -31.47187 -31.06121 -29.54188 -28.87940 -27.71522 -25.78884 -25.14101 -23.99350 -22.64887 -22.35446 -21.56480 -21.21219 -20.60145 -20.01695 -19.20240 -18.14100 -18.03297 -17.31948 -16.77433 -16.65755 -16.46354 -16.14052 -15.80370 -15.27723 -15.16690 -15.03270 -14.92207 -14.81976 -14.68146 -14.38288 -14.18568 -14.03686 -13.95703 -13.58287 -13.00783 -12.99370 -12.90075 -12.84264 -12.60532 -12.29620 -12.14916 -12.09651 -12.06875 -11.90599 -11.88070 -11.80092 -11.60575 -11.41913 -11.33012 -11.05569 -10.96766 -10.65774 -10.44396 -9.89291 -9.27774 -8.99370 -7.95026 -5.23802 1.14126 1.45362 1.46404 1.56067 1.68469 1.89020 2.19954 2.24184 2.54472 3.35785 3.39026 3.55668 3.56437 3.63283 3.73791 3.78659 3.85918 3.94745 4.08882 4.16358 4.18475 4.24298 4.28041 4.41114 4.46019 4.53366 4.61272 4.62991 4.69990 4.72303 4.75358 4.77357 4.83565 4.85679 4.90585 4.96140 4.96238 5.06396 5.08665 5.12531 5.20750 5.30292 5.36476 5.44286 5.48675 5.51117 5.54580 5.68866 5.80904 6.26050 6.32598 6.62140 7.13463 7.32300 7.34034 8.09504 8.32312 9.28233 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007222 B = 0.003902 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.852298 B = 7174.907496 C =10228.569599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.742 5.742 10 C 0.142 3.858 11 C 0.150 3.850 12 H 0.065 0.935 13 N -0.701 5.701 14 C 0.524 3.476 15 O -0.581 6.581 16 C -0.104 4.104 17 H 0.099 0.901 18 C -0.110 4.110 19 C 0.107 3.893 20 N -0.456 5.456 21 C 0.183 3.817 22 N -0.536 5.536 23 C -0.040 4.040 24 C -0.028 4.028 25 C -0.021 4.021 26 C -0.087 4.087 27 C -0.121 4.121 28 C -0.116 4.116 29 C -0.125 4.125 30 C -0.112 4.112 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.034 0.966 34 H 0.029 0.971 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.235 0.765 41 H 0.181 0.819 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.048 0.952 51 H 0.079 0.921 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -17.526 6.133 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.015 3.985 11 C 0.045 3.955 12 H 0.083 0.917 13 N -0.350 5.350 14 C 0.311 3.689 15 O -0.461 6.461 16 C -0.125 4.125 17 H 0.117 0.883 18 C -0.148 4.148 19 C -0.014 4.014 20 N -0.140 5.140 21 C -0.099 4.099 22 N -0.255 5.255 23 C -0.187 4.187 24 C -0.143 4.143 25 C -0.060 4.060 26 C -0.107 4.107 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.163 4.163 30 C -0.150 4.150 31 H 0.058 0.942 32 H 0.204 0.796 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.245 0.755 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.251 0.749 41 H 0.199 0.801 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.067 0.933 51 H 0.098 0.902 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.676 -17.695 5.946 19.026 hybrid contribution 0.248 1.927 -0.650 2.048 sum -3.428 -15.768 5.296 16.983 Atomic orbital electron populations 1.69853 1.06630 1.25743 1.59658 1.25531 0.96297 1.00970 1.03857 0.85110 0.78350 0.80000 0.76522 1.18908 1.22466 1.22006 1.19676 0.91489 0.85319 1.40878 0.90523 1.42516 1.05598 1.01023 1.89276 1.21210 0.93826 0.84823 0.98678 1.21214 0.89961 0.94362 0.89961 0.91654 1.45721 1.05301 1.73066 1.10933 1.20697 0.83439 0.74428 0.90311 1.90684 1.77878 1.51599 1.25931 1.21342 0.94803 1.01425 0.94968 0.88272 1.21595 0.91945 1.04128 0.97153 1.22167 1.01548 0.93031 0.84646 1.45636 1.13967 1.33684 1.20669 1.25419 1.00215 0.98465 0.85828 1.70477 1.06965 1.17406 1.30648 1.22120 0.97019 1.04630 0.94934 1.21198 0.90644 1.01305 1.01104 1.20101 0.95642 0.96417 0.93826 1.22041 0.95925 0.92219 1.00516 1.22424 0.99000 0.97280 0.97174 1.22470 0.96134 0.94937 1.01828 1.22360 0.96420 1.00041 0.97455 1.22110 0.97883 0.95881 0.99095 0.94228 0.79564 0.94800 0.95270 0.75489 0.90779 0.89851 0.85958 0.88546 0.74876 0.80149 0.87112 0.89308 0.88943 0.93112 0.90549 0.89998 0.91250 0.90423 0.93284 0.90203 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.27 5.43 -343.44 -1.87 -39.14 16 10 C 0.14 5.36 5.59 86.38 0.48 5.85 16 11 C 0.15 4.68 1.71 44.99 0.08 4.76 16 12 H 0.07 2.53 6.91 -2.39 -0.02 2.52 16 13 N -0.70 -19.91 3.91 -442.54 -1.73 -21.64 16 14 C 0.52 16.31 6.42 87.66 0.56 16.87 16 15 O -0.58 -23.22 15.14 -3.02 -0.05 -23.27 16 16 C -0.10 -2.46 2.54 -11.36 -0.03 -2.49 16 17 H 0.10 2.48 8.12 -2.38 -0.02 2.46 16 18 C -0.11 -2.46 4.66 30.73 0.14 -2.31 16 19 C 0.11 1.77 7.00 86.48 0.61 2.38 16 20 N -0.46 -8.99 3.13 -514.88 -1.61 -10.60 16 21 C 0.18 3.62 12.66 180.38 2.28 5.90 16 22 N -0.54 -13.54 11.27 -200.97 -2.26 -15.81 16 23 C -0.04 -0.92 11.84 83.30 0.99 0.07 16 24 C -0.03 -0.59 6.57 40.73 0.27 -0.32 16 25 C -0.02 -0.40 5.50 29.99 0.17 -0.23 16 26 C -0.09 -1.96 2.71 -10.07 -0.03 -1.99 16 27 C -0.12 -2.63 5.32 31.67 0.17 -2.46 16 28 C -0.12 -2.03 6.91 31.89 0.22 -1.81 16 29 C -0.13 -2.39 6.83 31.67 0.22 -2.18 16 30 C -0.11 -2.33 6.24 31.32 0.20 -2.14 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.37 20.56 7.31 -92.71 -0.68 19.88 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.03 1.13 7.16 -2.39 -0.02 1.11 16 35 H 0.41 9.75 8.78 -92.71 -0.81 8.94 16 36 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 37 H 0.08 2.20 7.77 -2.39 -0.02 2.18 16 38 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.11 1.64 8.11 -2.39 -0.02 1.62 16 43 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.32 7.51 -2.39 -0.02 1.30 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 49 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 52 H 0.04 1.11 6.87 -2.39 -0.02 1.10 16 Total: -1.00 -75.90 409.26 1.85 -74.06 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.57 Total: 43.97 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 7.63 Total: 3.58 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -7.19 Total: -146.38 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.90 1.85 -74.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278249684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.976 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds