Wall clock time and date at job start Sat Apr 11 2020 08:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47608 * 300.00450 * 3 2 1 6 6 H 1.48499 * 109.47179 * 60.00762 * 3 2 1 7 7 C 1.38806 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99579 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00200 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47343 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47383 * 62.15856 * 11 10 9 13 13 N 1.46504 * 109.46706 * 302.16345 * 11 10 9 14 14 C 1.34778 * 119.99599 * 158.26360 * 13 11 10 15 15 O 1.21280 * 120.00188 * 354.87265 * 14 13 11 16 16 C 1.50707 * 119.99850 * 174.87549 * 14 13 11 17 17 H 1.09004 * 109.49786 * 299.93347 * 16 14 13 18 18 C 1.53115 * 109.49788 * 179.83603 * 16 14 13 19 19 C 1.53263 * 109.71753 * 170.15234 * 18 16 14 20 20 N 1.46474 * 108.70429 * 50.73782 * 19 18 16 21 21 C 1.34401 * 128.44759 * 162.68819 * 20 19 18 22 22 N 1.30785 * 108.55707 * 180.22177 * 21 20 19 23 23 C 1.34424 * 109.31856 * 359.93126 * 22 21 20 24 24 C 1.33862 * 107.79977 * 359.97438 * 23 22 21 25 25 C 1.50709 * 128.68331 * 180.12770 * 24 23 22 26 26 C 1.52993 * 109.47169 * 182.16568 * 11 10 9 27 27 C 1.54270 * 110.03653 * 59.42007 * 26 11 10 28 28 C 1.54879 * 104.19774 * 217.10656 * 27 26 11 29 29 C 1.54886 * 102.75285 * 37.94176 * 28 27 26 30 30 C 1.53879 * 110.03162 * 302.25569 * 26 11 10 31 31 H 0.96996 * 119.99401 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00062 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46902 * 60.00244 * 10 9 7 34 34 H 1.08999 * 109.46923 * 300.00732 * 10 9 7 35 35 H 0.96997 * 120.00031 * 338.26179 * 13 11 10 36 36 H 1.08998 * 109.42898 * 290.20660 * 18 16 14 37 37 H 1.08994 * 109.43303 * 50.06289 * 18 16 14 38 38 H 1.08997 * 109.56279 * 290.99299 * 19 18 16 39 39 H 1.09004 * 109.76250 * 170.59807 * 19 18 16 40 40 H 1.08001 * 125.72489 * 0.20227 * 21 20 19 41 41 H 1.08004 * 126.10255 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.74449 * 44.62817 * 25 24 23 43 43 H 1.08999 * 109.78676 * 283.93075 * 25 24 23 44 44 H 1.09004 * 110.01939 * 180.86254 * 26 11 10 45 45 H 1.09001 * 110.48374 * 335.78754 * 27 26 11 46 46 H 1.09000 * 110.48245 * 98.42556 * 27 26 11 47 47 H 1.08997 * 110.75877 * 279.62794 * 28 27 26 48 48 H 1.08999 * 110.75597 * 156.25581 * 28 27 26 49 49 H 1.08999 * 110.48965 * 203.38117 * 29 28 27 50 50 H 1.09005 * 110.48835 * 80.73038 * 29 28 27 51 51 H 1.09001 * 110.03008 * 238.56833 * 30 26 11 52 52 H 1.08999 * 110.02886 * 359.95070 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4633 -4.7838 -0.9100 13 7 0.1872 -4.7132 1.1678 14 6 -1.0120 -5.3284 1.1690 15 8 -1.4056 -5.8916 0.1697 16 6 -1.8639 -5.3162 2.4121 17 1 -1.3229 -5.7948 3.2286 18 6 -3.1664 -6.0760 2.1466 19 6 -3.9237 -6.2800 3.4633 20 7 -4.0307 -4.9898 4.1484 21 6 -4.8619 -4.6389 5.1446 22 7 -4.6293 -3.3913 5.4607 23 6 -3.6459 -2.9107 4.6805 24 6 -3.2594 -3.8932 3.8575 25 6 -2.1908 -3.8663 2.7951 26 6 1.8280 -6.1440 0.0533 27 6 2.6941 -6.2024 1.3286 28 6 3.9874 -6.9247 0.8767 29 6 4.2147 -6.3599 -0.5474 30 6 2.7949 -6.2441 -1.1395 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6848 -3.7145 -0.8905 35 1 0.4699 -4.2001 1.9409 36 1 -3.7863 -5.5029 1.4571 37 1 -2.9370 -7.0461 1.7060 38 1 -3.3790 -6.9839 4.0923 39 1 -4.9212 -6.6688 3.2584 40 1 -5.5987 -5.2795 5.6063 41 1 -3.2399 -1.9104 4.7120 42 1 -1.2974 -3.3774 3.1838 43 1 -2.5540 -3.3276 1.9199 44 1 1.1281 -6.9796 0.0379 45 1 2.9221 -5.1965 1.6812 46 1 2.1892 -6.7750 2.1066 47 1 3.8363 -8.0037 0.8447 48 1 4.8211 -6.6696 1.5310 49 1 4.8196 -7.0474 -1.1385 50 1 4.6884 -5.3793 -0.4979 51 1 2.5648 -7.1287 -1.7334 52 1 2.7190 -5.3496 -1.7577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278249685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:16 Heat of formation + Delta-G solvation = 17.846936 kcal Electronic energy + Delta-G solvation = -31643.782345 eV Core-core repulsion = 27643.428128 eV Total energy + Delta-G solvation = -4000.354217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35375 -40.12066 -38.47596 -36.27051 -35.22651 -33.69709 -33.11366 -31.15290 -30.53534 -29.70547 -28.60869 -27.94345 -26.25605 -24.79365 -23.65329 -22.71794 -21.84029 -21.47688 -20.62850 -20.10202 -19.13297 -18.82737 -17.43242 -17.18820 -16.82613 -16.24432 -15.87271 -15.34588 -15.26036 -14.70978 -14.57938 -14.19495 -14.12544 -13.91219 -13.78365 -13.73144 -13.48376 -13.19160 -13.12493 -12.99038 -12.55294 -12.15487 -12.07395 -11.95213 -11.52488 -11.27506 -11.20091 -11.13011 -11.00452 -10.97406 -10.92661 -10.86965 -10.73650 -10.44743 -10.18674 -10.02543 -9.90566 -9.77528 -9.55122 -9.53389 -8.92497 -8.68716 -8.32009 -6.97992 -5.81370 -3.11011 2.04601 2.70343 2.78896 3.18956 3.33852 3.40717 3.46477 3.48713 4.23846 4.40957 4.49400 4.53348 4.62113 4.71568 4.72492 4.73736 4.82952 4.92079 4.98553 5.08990 5.23401 5.38585 5.41065 5.43319 5.48795 5.55234 5.57180 5.59860 5.65932 5.73069 5.77682 5.83378 5.84199 5.88172 5.92284 5.98816 5.99809 6.07750 6.13821 6.24186 6.28368 6.35307 6.44660 6.48088 6.50420 6.72546 6.76930 6.91487 7.18632 7.65731 7.77679 8.06998 8.36437 8.43525 9.48704 10.03840 10.39136 11.40846 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.004068 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.564361 B = 6882.054037 C =10064.791024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.143 3.857 11 C 0.144 3.856 12 H 0.086 0.914 13 N -0.706 5.706 14 C 0.522 3.478 15 O -0.546 6.546 16 C -0.109 4.109 17 H 0.098 0.902 18 C -0.114 4.114 19 C 0.105 3.895 20 N -0.458 5.458 21 C 0.176 3.824 22 N -0.497 5.497 23 C -0.022 4.022 24 C -0.014 4.014 25 C -0.038 4.038 26 C -0.096 4.096 27 C -0.122 4.122 28 C -0.124 4.124 29 C -0.123 4.123 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.202 0.798 41 H 0.171 0.829 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.059 0.941 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -17.714 6.706 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.016 3.984 11 C 0.039 3.961 12 H 0.104 0.896 13 N -0.356 5.356 14 C 0.307 3.693 15 O -0.424 6.424 16 C -0.131 4.131 17 H 0.116 0.884 18 C -0.152 4.152 19 C -0.017 4.017 20 N -0.143 5.143 21 C -0.106 4.106 22 N -0.216 5.216 23 C -0.169 4.169 24 C -0.128 4.128 25 C -0.077 4.077 26 C -0.116 4.116 27 C -0.159 4.159 28 C -0.161 4.161 29 C -0.161 4.161 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.239 0.761 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.218 0.782 41 H 0.189 0.811 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.391 -17.699 6.536 19.018 hybrid contribution 0.595 0.716 -0.238 0.961 sum -1.795 -16.983 6.298 18.202 Atomic orbital electron populations 1.69667 1.05052 1.25616 1.57389 1.24723 0.95483 0.97622 1.02768 0.86160 0.78789 0.84231 0.77233 1.20597 1.21894 1.21817 1.19224 0.91000 0.84035 1.43112 0.91181 1.42361 1.05943 0.99750 1.89547 1.21073 0.93183 0.85094 0.99077 1.21285 0.91221 0.94555 0.89025 0.89645 1.45955 1.17455 1.52138 1.20025 1.20241 0.81475 0.78454 0.89081 1.90679 1.72007 1.45246 1.34431 1.21412 0.96470 0.97959 0.97268 0.88407 1.21673 0.95145 1.02874 0.95491 1.22019 1.02495 0.83056 0.94143 1.45451 1.28825 1.11335 1.28673 1.24732 0.98789 0.94336 0.92711 1.70493 1.16829 1.07852 1.26378 1.21908 0.98466 0.99836 0.96644 1.21084 0.99953 0.88476 1.03304 1.20226 0.96305 0.94851 0.96290 1.22080 0.96833 0.97596 0.95138 1.22508 0.95288 1.01242 0.96906 1.22468 0.97649 0.99394 0.96602 1.22347 0.96804 1.01040 0.95872 1.22209 0.94147 1.02149 0.97380 0.93501 0.78081 0.95377 0.94660 0.76079 0.89992 0.88519 0.89756 0.88816 0.78152 0.81127 0.88431 0.88728 0.91074 0.90422 0.92468 0.92099 0.91914 0.92187 0.91311 0.92201 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.12 5.46 -59.91 -0.33 -17.44 16 10 C 0.14 2.60 5.24 -4.04 -0.02 2.58 16 11 C 0.14 2.24 1.82 -67.93 -0.12 2.11 16 12 H 0.09 1.56 7.61 -51.93 -0.40 1.17 16 13 N -0.71 -10.07 4.24 -53.81 -0.23 -10.30 16 14 C 0.52 7.43 7.05 -10.98 -0.08 7.35 16 15 O -0.55 -9.49 15.50 5.56 0.09 -9.40 16 16 C -0.11 -1.21 2.56 -91.46 -0.23 -1.45 16 17 H 0.10 0.93 8.12 -51.93 -0.42 0.51 16 18 C -0.11 -1.12 4.66 -26.54 -0.12 -1.24 16 19 C 0.11 0.81 7.00 -3.92 -0.03 0.79 16 20 N -0.46 -4.99 3.13 -114.10 -0.36 -5.35 16 21 C 0.18 2.00 12.66 -90.72 -1.15 0.85 16 22 N -0.50 -7.27 11.27 -14.87 -0.17 -7.44 16 23 C -0.02 -0.31 11.84 -17.95 -0.21 -0.52 16 24 C -0.01 -0.18 6.57 -81.73 -0.54 -0.72 16 25 C -0.04 -0.48 5.41 -27.63 -0.15 -0.63 16 26 C -0.10 -1.25 2.92 -89.50 -0.26 -1.51 16 27 C -0.12 -1.41 5.83 -25.08 -0.15 -1.55 16 28 C -0.12 -1.28 6.91 -24.75 -0.17 -1.45 16 29 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 30 C -0.12 -1.48 5.93 -25.61 -0.15 -1.63 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.39 9.66 7.43 -40.82 -0.30 9.36 16 33 H 0.03 0.50 5.98 -51.93 -0.31 0.19 16 34 H 0.04 0.66 6.41 -51.93 -0.33 0.33 16 35 H 0.40 5.53 8.14 -40.82 -0.33 5.20 16 36 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.10 0.91 7.77 -51.93 -0.40 0.51 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.17 2.31 8.06 -52.48 -0.42 1.88 16 42 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 43 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 0.97 5.68 -51.93 -0.30 0.68 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -32.64 405.17 -11.55 -44.19 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -8.56 Total: 14.65 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.80 Total: -5.47 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.36 Total: -66.85 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.64 -11.55 -44.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278249685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.037 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds