Wall clock time and date at job start Sat Apr 11 2020 08:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47608 * 300.00450 * 3 2 1 6 6 H 1.48499 * 109.47179 * 60.00762 * 3 2 1 7 7 C 1.38806 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99579 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00200 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47343 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47383 * 62.15856 * 11 10 9 13 13 N 1.46504 * 109.46706 * 302.16345 * 11 10 9 14 14 C 1.34778 * 119.99599 * 158.26360 * 13 11 10 15 15 O 1.21280 * 120.00188 * 354.87265 * 14 13 11 16 16 C 1.50707 * 119.99850 * 174.87549 * 14 13 11 17 17 H 1.09004 * 109.49786 * 299.93347 * 16 14 13 18 18 C 1.53115 * 109.49788 * 179.83603 * 16 14 13 19 19 C 1.53263 * 109.71753 * 170.15234 * 18 16 14 20 20 N 1.46474 * 108.70429 * 50.73782 * 19 18 16 21 21 C 1.34401 * 128.44759 * 162.68819 * 20 19 18 22 22 N 1.30785 * 108.55707 * 180.22177 * 21 20 19 23 23 C 1.34424 * 109.31856 * 359.93126 * 22 21 20 24 24 C 1.33862 * 107.79977 * 359.97438 * 23 22 21 25 25 C 1.50709 * 128.68331 * 180.12770 * 24 23 22 26 26 C 1.52993 * 109.47169 * 182.16568 * 11 10 9 27 27 C 1.54270 * 110.03653 * 59.42007 * 26 11 10 28 28 C 1.54879 * 104.19774 * 217.10656 * 27 26 11 29 29 C 1.54886 * 102.75285 * 37.94176 * 28 27 26 30 30 C 1.53879 * 110.03162 * 302.25569 * 26 11 10 31 31 H 0.96996 * 119.99401 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00062 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.46902 * 60.00244 * 10 9 7 34 34 H 1.08999 * 109.46923 * 300.00732 * 10 9 7 35 35 H 0.96997 * 120.00031 * 338.26179 * 13 11 10 36 36 H 1.08998 * 109.42898 * 290.20660 * 18 16 14 37 37 H 1.08994 * 109.43303 * 50.06289 * 18 16 14 38 38 H 1.08997 * 109.56279 * 290.99299 * 19 18 16 39 39 H 1.09004 * 109.76250 * 170.59807 * 19 18 16 40 40 H 1.08001 * 125.72489 * 0.20227 * 21 20 19 41 41 H 1.08004 * 126.10255 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.74449 * 44.62817 * 25 24 23 43 43 H 1.08999 * 109.78676 * 283.93075 * 25 24 23 44 44 H 1.09004 * 110.01939 * 180.86254 * 26 11 10 45 45 H 1.09001 * 110.48374 * 335.78754 * 27 26 11 46 46 H 1.09000 * 110.48245 * 98.42556 * 27 26 11 47 47 H 1.08997 * 110.75877 * 279.62794 * 28 27 26 48 48 H 1.08999 * 110.75597 * 156.25581 * 28 27 26 49 49 H 1.08999 * 110.48965 * 203.38117 * 29 28 27 50 50 H 1.09005 * 110.48835 * 80.73038 * 29 28 27 51 51 H 1.09001 * 110.03008 * 238.56833 * 30 26 11 52 52 H 1.08999 * 110.02886 * 359.95070 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4633 -4.7838 -0.9100 13 7 0.1872 -4.7132 1.1678 14 6 -1.0120 -5.3284 1.1690 15 8 -1.4056 -5.8916 0.1697 16 6 -1.8639 -5.3162 2.4121 17 1 -1.3229 -5.7948 3.2286 18 6 -3.1664 -6.0760 2.1466 19 6 -3.9237 -6.2800 3.4633 20 7 -4.0307 -4.9898 4.1484 21 6 -4.8619 -4.6389 5.1446 22 7 -4.6293 -3.3913 5.4607 23 6 -3.6459 -2.9107 4.6805 24 6 -3.2594 -3.8932 3.8575 25 6 -2.1908 -3.8663 2.7951 26 6 1.8280 -6.1440 0.0533 27 6 2.6941 -6.2024 1.3286 28 6 3.9874 -6.9247 0.8767 29 6 4.2147 -6.3599 -0.5474 30 6 2.7949 -6.2441 -1.1395 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6848 -3.7145 -0.8905 35 1 0.4699 -4.2001 1.9409 36 1 -3.7863 -5.5029 1.4571 37 1 -2.9370 -7.0461 1.7060 38 1 -3.3790 -6.9839 4.0923 39 1 -4.9212 -6.6688 3.2584 40 1 -5.5987 -5.2795 5.6063 41 1 -3.2399 -1.9104 4.7120 42 1 -1.2974 -3.3774 3.1838 43 1 -2.5540 -3.3276 1.9199 44 1 1.1281 -6.9796 0.0379 45 1 2.9221 -5.1965 1.6812 46 1 2.1892 -6.7750 2.1066 47 1 3.8363 -8.0037 0.8447 48 1 4.8211 -6.6696 1.5310 49 1 4.8196 -7.0474 -1.1385 50 1 4.6884 -5.3793 -0.4979 51 1 2.5648 -7.1287 -1.7334 52 1 2.7190 -5.3496 -1.7577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278249685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:15 Heat of formation + Delta-G solvation = -0.943446 kcal Electronic energy + Delta-G solvation = -31644.597157 eV Core-core repulsion = 27643.428128 eV Total energy + Delta-G solvation = -4001.169029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.28178 -41.30501 -39.56005 -37.22796 -36.70153 -35.24810 -34.13855 -32.88477 -31.48429 -31.00134 -29.54704 -28.86478 -27.79264 -25.81473 -25.10841 -24.01001 -23.08530 -22.40882 -21.62615 -21.15431 -20.08612 -19.99692 -19.12969 -18.20298 -18.05543 -17.45506 -16.86409 -16.48184 -16.35950 -16.23667 -15.76066 -15.29520 -15.22314 -15.03208 -14.97584 -14.87192 -14.73726 -14.47394 -14.20283 -14.06069 -13.99786 -13.51007 -13.07737 -12.98770 -12.85912 -12.80592 -12.61815 -12.22807 -12.14179 -12.06950 -12.05402 -11.90029 -11.86927 -11.84399 -11.76538 -11.38883 -11.18943 -11.02339 -10.89656 -10.69661 -10.42340 -9.93747 -9.32273 -8.96919 -7.92972 -5.21648 1.11258 1.48286 1.49246 1.58430 1.61512 1.89566 2.18064 2.21549 2.56706 3.35518 3.42161 3.55077 3.58190 3.64599 3.74956 3.75640 3.81804 3.93754 4.02717 4.12852 4.19340 4.21449 4.29448 4.36777 4.45401 4.51467 4.55704 4.63466 4.68035 4.70935 4.75652 4.77033 4.84518 4.87699 4.88900 4.93460 4.94455 5.11076 5.13727 5.14538 5.18536 5.30689 5.37573 5.39435 5.50055 5.52569 5.56824 5.65443 5.75279 6.27800 6.36588 6.58415 7.11858 7.25390 7.35744 8.09151 8.32817 9.29896 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.004068 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.564361 B = 6882.054037 C =10064.791024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.148 3.852 11 C 0.154 3.846 12 H 0.053 0.947 13 N -0.703 5.703 14 C 0.521 3.479 15 O -0.579 6.579 16 C -0.097 4.097 17 H 0.125 0.875 18 C -0.111 4.111 19 C 0.107 3.893 20 N -0.455 5.455 21 C 0.190 3.810 22 N -0.538 5.538 23 C -0.049 4.049 24 C -0.021 4.021 25 C -0.031 4.031 26 C -0.087 4.087 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.121 4.121 30 C -0.123 4.123 31 H 0.249 0.751 32 H 0.374 0.626 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.408 0.592 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.244 0.756 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -20.329 8.100 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.022 3.978 11 C 0.049 3.951 12 H 0.071 0.929 13 N -0.353 5.353 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.118 4.118 17 H 0.143 0.857 18 C -0.149 4.149 19 C -0.013 4.013 20 N -0.139 5.139 21 C -0.092 4.092 22 N -0.258 5.258 23 C -0.195 4.195 24 C -0.136 4.136 25 C -0.069 4.069 26 C -0.107 4.107 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.159 4.159 30 C -0.161 4.161 31 H 0.058 0.942 32 H 0.206 0.794 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.244 0.756 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.260 0.740 41 H 0.181 0.819 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.436 -20.351 7.931 21.889 hybrid contribution 0.309 1.462 -0.725 1.661 sum -1.127 -18.889 7.206 20.248 Atomic orbital electron populations 1.69821 1.06502 1.25768 1.59489 1.25457 0.96211 1.00741 1.03782 0.85179 0.78425 0.80352 0.76431 1.18934 1.22659 1.22154 1.19604 0.91460 0.85089 1.40971 0.90497 1.42528 1.05592 1.00917 1.89415 1.21168 0.93476 0.83819 0.99363 1.21046 0.90576 0.95140 0.88327 0.92916 1.45936 1.17621 1.52129 1.19603 1.20781 0.81251 0.77486 0.89689 1.90662 1.72577 1.46739 1.35900 1.21384 0.96924 0.97332 0.96195 0.85707 1.21644 0.94126 1.02536 0.96585 1.22292 1.04296 0.81860 0.92899 1.45638 1.27951 1.11785 1.28504 1.25535 0.98277 0.93688 0.91745 1.70451 1.17706 1.09884 1.27718 1.21983 0.99444 1.00252 0.97843 1.20966 1.00345 0.89211 1.03048 1.20054 0.96174 0.95576 0.95138 1.21985 0.96781 0.95308 0.96640 1.22466 0.95798 1.01091 0.96179 1.22461 0.97101 0.99917 0.96033 1.22341 0.95783 1.01120 0.96621 1.22228 0.95097 1.01747 0.97018 0.94220 0.79436 0.93907 0.94766 0.75628 0.92345 0.87614 0.86792 0.85928 0.73962 0.81946 0.88682 0.91676 0.91546 0.91477 0.91284 0.90820 0.90813 0.90554 0.92210 0.91228 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.94 13.06 21.65 0.28 -57.65 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -12.77 9.99 84.03 0.84 -11.93 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -35.48 5.46 -343.45 -1.87 -37.36 16 10 C 0.15 5.41 5.24 86.38 0.45 5.86 16 11 C 0.15 4.89 1.82 44.99 0.08 4.97 16 12 H 0.05 2.03 7.61 -2.39 -0.02 2.01 16 13 N -0.70 -20.33 4.24 -442.54 -1.88 -22.21 16 14 C 0.52 14.94 7.05 87.66 0.62 15.55 16 15 O -0.58 -20.49 15.50 -3.03 -0.05 -20.54 16 16 C -0.10 -2.07 2.56 -11.34 -0.03 -2.10 16 17 H 0.13 2.04 8.12 -2.38 -0.02 2.03 16 18 C -0.11 -2.01 4.66 30.72 0.14 -1.86 16 19 C 0.11 1.28 7.00 86.47 0.61 1.89 16 20 N -0.46 -8.94 3.13 -514.89 -1.61 -10.55 16 21 C 0.19 3.85 12.66 180.38 2.28 6.13 16 22 N -0.54 -15.53 11.27 -200.97 -2.26 -17.79 16 23 C -0.05 -1.45 11.84 83.30 0.99 -0.46 16 24 C -0.02 -0.53 6.57 40.73 0.27 -0.26 16 25 C -0.03 -0.79 5.41 30.01 0.16 -0.63 16 26 C -0.09 -2.19 2.92 -10.07 -0.03 -2.22 16 27 C -0.12 -2.47 5.83 31.67 0.18 -2.29 16 28 C -0.12 -2.09 6.91 31.88 0.22 -1.87 16 29 C -0.12 -2.40 6.83 31.67 0.22 -2.18 16 30 C -0.12 -2.89 5.93 31.32 0.19 -2.71 16 31 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.37 19.50 7.43 -92.71 -0.69 18.82 16 33 H 0.04 1.49 5.98 -2.38 -0.01 1.47 16 34 H 0.03 1.29 6.41 -2.39 -0.02 1.27 16 35 H 0.41 11.24 8.14 -92.71 -0.76 10.48 16 36 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.11 1.78 7.77 -2.39 -0.02 1.76 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.24 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.09 2.44 7.85 -2.39 -0.02 2.42 16 43 H 0.06 2.05 8.11 -2.39 -0.02 2.03 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 1.56 5.68 -2.39 -0.01 1.55 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.06 1.52 6.17 -2.39 -0.01 1.51 16 Total: -1.00 -72.97 405.17 1.78 -71.19 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.51 Total: 45.02 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 7.66 Total: 2.50 kcal Atomic # 7 Polarization: -138.22 SS G_CDS: -7.35 Total: -145.57 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.97 1.78 -71.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278249685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.244 kcal (2) G-P(sol) polarization free energy of solvation -72.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds