Wall clock time and date at job start Sat Apr 11 2020 08:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47442 * 269.99988 * 3 2 1 5 5 H 1.48498 * 109.47009 * 30.00430 * 3 2 1 6 6 H 1.48503 * 109.47034 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99784 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99670 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47088 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47261 * 295.00555 * 11 10 9 13 13 N 1.46498 * 109.46661 * 55.00490 * 11 10 9 14 14 C 1.34787 * 120.00080 * 244.79887 * 13 11 10 15 15 O 1.21281 * 119.99601 * 355.02087 * 14 13 11 16 16 C 1.50699 * 120.00283 * 175.02119 * 14 13 11 17 17 H 1.09001 * 109.55007 * 60.11664 * 16 14 13 18 18 C 1.53192 * 109.48298 * 180.10381 * 16 14 13 19 19 C 1.53259 * 109.47631 * 189.27297 * 18 16 14 20 20 N 1.46474 * 108.91100 * 309.86001 * 19 18 16 21 21 C 1.36318 * 127.77461 * 197.04513 * 20 19 18 22 22 C 1.34861 * 106.68684 * 179.97438 * 21 20 19 23 23 N 1.34289 * 108.07079 * 0.02562 * 22 21 20 24 24 C 1.30087 * 109.21472 * 0.02562 * 23 22 21 25 25 C 1.51040 * 127.39111 * 179.89793 * 24 23 22 26 26 C 1.53000 * 109.47181 * 175.00114 * 11 10 9 27 27 C 1.54265 * 110.03148 * 297.03791 * 26 11 10 28 28 C 1.54892 * 104.19311 * 217.10418 * 27 26 11 29 29 C 1.54884 * 102.75066 * 37.94770 * 28 27 26 30 30 C 1.53875 * 110.03180 * 179.87267 * 26 11 10 31 31 H 0.96994 * 120.00126 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99880 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46889 * 60.00309 * 10 9 7 34 34 H 1.08998 * 109.47824 * 300.00067 * 10 9 7 35 35 H 0.97002 * 120.00446 * 64.80160 * 13 11 10 36 36 H 1.08991 * 109.36664 * 69.33694 * 18 16 14 37 37 H 1.09006 * 109.58840 * 309.33975 * 18 16 14 38 38 H 1.09002 * 109.58261 * 189.99850 * 19 18 16 39 39 H 1.08995 * 109.58751 * 69.72672 * 19 18 16 40 40 H 1.07996 * 126.65927 * 359.93758 * 21 20 19 41 41 H 1.07997 * 125.96016 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.71378 * 315.72198 * 25 24 23 43 43 H 1.08993 * 109.71932 * 76.36483 * 25 24 23 44 44 H 1.08999 * 110.01342 * 58.47964 * 26 11 10 45 45 H 1.09003 * 110.48874 * 335.77998 * 27 26 11 46 46 H 1.09006 * 110.48739 * 98.42858 * 27 26 11 47 47 H 1.08997 * 110.75467 * 279.62529 * 28 27 26 48 48 H 1.09007 * 110.75605 * 156.25650 * 28 27 26 49 49 H 1.08999 * 110.48845 * 203.38365 * 29 28 27 50 50 H 1.08994 * 110.49019 * 80.73281 * 29 28 27 51 51 H 1.08997 * 110.02828 * 238.57194 * 30 26 11 52 52 H 1.09003 * 110.03261 * 359.94707 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.4987 -4.8139 0.9311 13 7 0.1432 -4.6758 -1.1312 14 6 -1.1695 -4.4655 -0.9087 15 8 -1.6033 -4.4853 0.2236 16 6 -2.0979 -4.2057 -2.0670 17 1 -2.0818 -5.0584 -2.7457 18 6 -3.5225 -3.9985 -1.5433 19 6 -4.5007 -3.9655 -2.7227 20 7 -4.0024 -3.0223 -3.7264 21 6 -4.6939 -2.4549 -4.7551 22 6 -3.8266 -1.6575 -5.4115 23 7 -2.6364 -1.7402 -4.7951 24 6 -2.7325 -2.5555 -3.7860 25 6 -1.6425 -2.9481 -2.8170 26 6 1.8246 -6.1411 -0.1276 27 6 2.5702 -6.1942 -1.4771 28 6 2.4508 -7.6739 -1.9191 29 6 1.0159 -8.0492 -1.4727 30 6 0.8363 -7.3206 -0.1249 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6854 -3.7149 0.8878 34 1 2.6841 -3.7142 -0.8921 35 1 0.4782 -4.7319 -2.0398 36 1 -3.5747 -3.0543 -1.0015 37 1 -3.7884 -4.8166 -0.8738 38 1 -5.4822 -3.6436 -2.3744 39 1 -4.5771 -4.9600 -3.1621 40 1 -5.7342 -2.6136 -4.9978 41 1 -4.0501 -1.0580 -6.2815 42 1 -0.7228 -3.1575 -3.3632 43 1 -1.4729 -2.1389 -2.1068 44 1 2.5320 -6.2448 0.6950 45 1 2.0903 -5.5390 -2.2041 46 1 3.6166 -5.9185 -1.3459 47 1 3.1887 -8.2909 -1.4065 48 1 2.5547 -7.7636 -3.0005 49 1 0.9280 -9.1273 -1.3382 50 1 0.2851 -7.6936 -2.1990 51 1 1.0648 -7.9971 0.6987 52 1 -0.1852 -6.9516 -0.0322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278253061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:26 Heat of formation + Delta-G solvation = -1.254782 kcal Electronic energy + Delta-G solvation = -32294.670051 eV Core-core repulsion = 28293.487521 eV Total energy + Delta-G solvation = -4001.182529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.25445 -41.33761 -39.36737 -37.17841 -36.69215 -35.12621 -34.33727 -32.91934 -31.15962 -30.77813 -29.57724 -29.44472 -27.73368 -25.82421 -25.12635 -24.06103 -22.81151 -22.34848 -21.71581 -20.93028 -20.34085 -19.99023 -19.15464 -18.19841 -17.94184 -17.16244 -16.87764 -16.75103 -16.44565 -16.04759 -15.79465 -15.29350 -15.19929 -15.03700 -14.98899 -14.78416 -14.70718 -14.51902 -14.11164 -13.99925 -13.75080 -13.58808 -13.11004 -12.99029 -12.89056 -12.79766 -12.76689 -12.24054 -12.18712 -12.15378 -11.97861 -11.87724 -11.81871 -11.63465 -11.49386 -11.42765 -11.33070 -10.97965 -10.90693 -10.72888 -10.51856 -9.90283 -9.25723 -8.95799 -7.92062 -5.19956 1.12710 1.44504 1.46481 1.54202 1.63864 1.89424 2.19434 2.26162 2.55795 3.25900 3.41739 3.53469 3.55080 3.60295 3.62929 3.77184 3.85677 4.06438 4.12301 4.17041 4.21281 4.27686 4.31179 4.42581 4.49482 4.57696 4.60257 4.63213 4.64567 4.72887 4.74513 4.81594 4.85217 4.91160 4.93124 4.93915 4.97015 5.09463 5.13570 5.17136 5.22279 5.33441 5.38310 5.42271 5.48419 5.52992 5.57164 5.68639 5.88939 6.25053 6.27613 6.61148 7.20626 7.32318 7.36125 8.13439 8.35930 9.29990 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006133 B = 0.005376 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4564.590122 B = 5206.960231 C = 8580.697557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.139 3.861 11 C 0.149 3.851 12 H 0.070 0.930 13 N -0.696 5.696 14 C 0.525 3.475 15 O -0.576 6.576 16 C -0.094 4.094 17 H 0.133 0.867 18 C -0.113 4.113 19 C 0.107 3.893 20 N -0.454 5.454 21 C -0.038 4.038 22 C -0.066 4.066 23 N -0.534 5.534 24 C 0.194 3.806 25 C -0.014 4.014 26 C -0.091 4.091 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.117 4.117 30 C -0.114 4.114 31 H 0.246 0.754 32 H 0.374 0.626 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.407 0.593 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.218 0.782 41 H 0.185 0.815 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -19.732 -8.989 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.012 3.988 11 C 0.043 3.957 12 H 0.088 0.912 13 N -0.347 5.347 14 C 0.312 3.688 15 O -0.456 6.456 16 C -0.116 4.116 17 H 0.151 0.849 18 C -0.151 4.151 19 C -0.013 4.013 20 N -0.137 5.137 21 C -0.172 4.172 22 C -0.213 4.213 23 N -0.253 5.253 24 C -0.069 4.069 25 C -0.053 4.053 26 C -0.110 4.110 27 C -0.156 4.156 28 C -0.154 4.154 29 C -0.154 4.154 30 C -0.152 4.152 31 H 0.054 0.946 32 H 0.206 0.794 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.235 0.765 41 H 0.202 0.798 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.091 -19.333 -8.283 21.897 hybrid contribution -0.383 1.464 0.185 1.524 sum -6.474 -17.869 -8.098 20.659 Atomic orbital electron populations 1.69831 1.06480 1.25492 1.59430 1.25483 0.96242 1.00796 1.03955 0.85240 0.77811 0.80047 0.77278 1.21649 1.22675 1.19280 1.19578 0.91375 0.85304 1.41012 0.90664 1.42477 1.05636 1.00906 1.89254 1.21244 0.93936 0.85057 0.98565 1.21116 0.90119 0.94407 0.90031 0.91220 1.45733 1.06717 1.72033 1.10199 1.20593 0.83315 0.74829 0.90099 1.90679 1.76918 1.52653 1.25330 1.21335 0.95088 0.99376 0.95786 0.84877 1.21686 0.91925 1.04211 0.97314 1.22280 0.98784 0.93577 0.86705 1.45675 1.09222 1.34980 1.23813 1.23168 1.00795 1.01208 0.92011 1.22841 0.89165 1.05218 1.04088 1.69997 1.27479 1.19023 1.08843 1.23062 0.86947 0.98550 0.98339 1.19873 0.94510 0.96794 0.94128 1.22036 0.97018 0.92304 0.99684 1.22426 1.00161 0.97616 0.95428 1.22468 0.96771 0.95031 1.01166 1.22309 0.97170 1.00027 0.95916 1.22099 0.98318 0.96033 0.98712 0.94556 0.79418 0.95809 0.94530 0.75635 0.93269 0.86966 0.86516 0.86140 0.76538 0.79815 0.88557 0.92284 0.89576 0.92011 0.91226 0.90881 0.90711 0.90873 0.91791 0.91467 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.22 13.06 21.65 0.28 -60.94 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 3 Si 0.97 48.16 29.55 68.60 2.03 50.19 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.24 -13.71 9.99 84.04 0.84 -12.87 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.12 5.43 -343.45 -1.87 -39.99 16 10 C 0.14 5.44 5.84 86.38 0.50 5.94 16 11 C 0.15 4.72 2.04 44.99 0.09 4.81 16 12 H 0.07 2.67 6.91 -2.39 -0.02 2.66 16 13 N -0.70 -20.39 3.63 -442.53 -1.61 -21.99 16 14 C 0.52 16.98 6.24 87.66 0.55 17.52 16 15 O -0.58 -23.25 15.17 -3.03 -0.05 -23.30 16 16 C -0.09 -2.44 2.54 -11.36 -0.03 -2.47 16 17 H 0.13 2.44 8.12 -2.39 -0.02 2.42 16 18 C -0.11 -2.68 4.68 30.74 0.14 -2.54 16 19 C 0.11 1.77 6.98 86.47 0.60 2.38 16 20 N -0.45 -11.11 3.14 -513.82 -1.61 -12.72 16 21 C -0.04 -0.83 11.65 83.22 0.97 0.14 16 22 C -0.07 -1.86 11.87 83.54 0.99 -0.87 16 23 N -0.53 -19.70 11.24 -187.51 -2.11 -21.81 16 24 C 0.19 6.40 7.65 138.23 1.06 7.46 16 25 C -0.01 -0.45 5.52 30.07 0.17 -0.29 16 26 C -0.09 -2.08 2.82 -10.07 -0.03 -2.11 16 27 C -0.12 -2.31 5.12 31.67 0.16 -2.15 16 28 C -0.12 -1.77 6.91 31.88 0.22 -1.55 16 29 C -0.12 -1.84 6.83 31.67 0.22 -1.63 16 30 C -0.11 -2.32 6.19 31.32 0.19 -2.13 16 31 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.37 20.96 6.80 -92.71 -0.63 20.33 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.04 1.35 7.14 -2.39 -0.02 1.34 16 35 H 0.41 10.23 6.86 -92.71 -0.64 9.60 16 36 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.11 2.35 7.80 -2.38 -0.02 2.33 16 38 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.22 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.18 4.14 8.06 -2.91 -0.02 4.11 16 42 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 43 H 0.06 2.64 8.11 -2.39 -0.02 2.62 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.27 5.96 -2.39 -0.01 1.25 16 46 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.05 1.19 7.12 -2.39 -0.02 1.17 16 Total: -1.00 -80.85 405.59 1.85 -79.00 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.34 Total: 45.71 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.12 Total: 5.85 kcal Atomic # 7 Polarization: -150.54 SS G_CDS: -6.91 Total: -157.46 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -80.85 1.85 -79.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278253061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.750 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds