Wall clock time and date at job start Sat Apr 11 2020 08:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99703 * 2 1 4 4 H 1.48497 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47300 * 300.00171 * 3 2 1 6 6 H 1.48495 * 109.47461 * 60.00418 * 3 2 1 7 7 C 1.38809 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99563 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99675 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46755 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.01660 * 306.38618 * 11 10 9 13 13 C 1.54263 * 110.07644 * 67.80678 * 11 10 9 14 14 C 1.55028 * 104.28327 * 142.82219 * 13 11 10 15 15 C 1.54886 * 102.68665 * 322.23797 * 14 13 11 16 16 H 1.09008 * 110.48722 * 279.03052 * 15 14 13 17 17 N 1.46496 * 110.49065 * 156.51462 * 15 14 13 18 18 C 1.34776 * 120.00033 * 88.24427 * 17 15 14 19 19 O 1.21680 * 119.99772 * 5.07028 * 18 17 15 20 20 C 1.46763 * 119.99968 * 185.07667 * 18 17 15 21 21 C 1.36694 * 126.87990 * 354.74073 * 20 18 17 22 22 N 1.33309 * 107.78602 * 180.02562 * 21 20 18 23 23 C 1.30959 * 109.75761 * 359.34589 * 22 21 20 24 24 N 1.34536 * 108.94403 * 1.01658 * 23 22 21 25 25 C 1.46475 * 126.52458 * 178.60568 * 24 23 22 26 26 C 1.53039 * 109.58022 * 28.19527 * 25 24 23 27 27 C 1.52820 * 109.60426 * 270.60539 * 26 25 24 28 28 C 1.52582 * 110.30052 * 61.24168 * 27 26 25 29 29 C 1.50939 * 125.86121 * 181.14482 * 23 22 21 30 30 C 1.53872 * 110.03470 * 185.00049 * 11 10 9 31 31 H 0.97000 * 120.00073 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00145 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47538 * 60.00011 * 10 9 7 34 34 H 1.09000 * 109.47371 * 299.99005 * 10 9 7 35 35 H 1.08997 * 110.49106 * 261.59958 * 13 11 10 36 36 H 1.09004 * 110.48688 * 24.10755 * 13 11 10 37 37 H 1.09001 * 110.87756 * 203.89907 * 14 13 11 38 38 H 1.09009 * 110.69615 * 80.48855 * 14 13 11 39 39 H 0.97001 * 120.00180 * 268.24212 * 17 15 14 40 40 H 1.07999 * 126.10579 * 359.81243 * 21 20 18 41 41 H 1.09002 * 109.45584 * 148.23300 * 25 24 23 42 42 H 1.08995 * 109.45296 * 268.18770 * 25 24 23 43 43 H 1.09001 * 109.44905 * 30.64831 * 26 25 24 44 44 H 1.08996 * 109.44670 * 150.56259 * 26 25 24 45 45 H 1.08998 * 109.33129 * 181.49554 * 27 26 25 46 46 H 1.09004 * 109.33317 * 301.15709 * 27 26 25 47 47 H 1.08995 * 109.45527 * 153.43551 * 28 27 26 48 48 H 1.08996 * 109.45742 * 273.40342 * 28 27 26 49 49 H 1.09009 * 109.49980 * 106.94708 * 29 23 22 50 50 H 1.08994 * 109.54129 * 346.84651 * 29 23 22 51 51 H 1.09000 * 110.03712 * 121.38169 * 30 11 10 52 52 H 1.09004 * 110.06955 * 359.97322 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8196 -0.0022 12 1 0.3594 -4.7086 0.8220 13 6 0.3044 -4.8662 -1.3441 14 6 0.1424 -6.3794 -1.6396 15 6 1.4872 -6.9683 -1.1461 16 1 2.2634 -6.8300 -1.8988 17 7 1.3367 -8.3888 -0.8215 18 6 1.5128 -9.3211 -1.7787 19 8 1.8867 -8.9906 -2.8884 20 6 1.2537 -10.7350 -1.4825 21 6 0.9288 -11.2727 -0.2684 22 7 0.7786 -12.5871 -0.4323 23 6 0.9782 -12.9025 -1.6875 24 7 1.2886 -11.7877 -2.3739 25 6 1.6139 -11.7040 -3.7996 26 6 0.9130 -12.8368 -4.5530 27 6 1.8160 -14.0694 -4.5812 28 6 2.0977 -14.5518 -3.1613 29 6 0.8759 -14.2876 -2.2783 30 6 1.8160 -6.1561 0.1238 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6842 -3.7149 0.8888 34 1 2.6854 -3.7141 -0.8912 35 1 -0.6708 -4.3891 -1.2473 36 1 0.8872 -4.3846 -2.1293 37 1 0.0125 -6.5549 -2.7075 38 1 -0.6919 -6.7951 -1.0744 39 1 1.1103 -8.6585 0.0824 40 1 0.8174 -10.7300 0.6586 41 1 1.2784 -10.7443 -4.1928 42 1 2.6922 -11.7933 -3.9317 43 1 -0.0220 -13.0832 -4.0498 44 1 0.7023 -12.5178 -5.5737 45 1 1.3238 -14.8644 -5.1414 46 1 2.7581 -13.8155 -5.0670 47 1 2.3104 -15.6207 -3.1766 48 1 2.9579 -14.0161 -2.7599 49 1 -0.0304 -14.3607 -2.8797 50 1 0.8406 -15.0245 -1.4760 51 1 1.4764 -6.6937 1.0091 52 1 2.8894 -5.9770 0.1849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284193487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:35 Heat of formation + Delta-G solvation = -7.058401 kcal Electronic energy + Delta-G solvation = -30094.217669 eV Core-core repulsion = 26092.783476 eV Total energy + Delta-G solvation = -4001.434193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.52383 -40.85912 -39.17361 -38.27496 -36.48860 -35.00077 -34.64516 -33.01622 -31.91712 -30.80438 -30.13304 -28.87535 -27.08429 -26.16933 -25.47598 -24.01648 -23.90681 -21.95831 -21.45673 -20.95987 -20.87979 -20.57581 -19.10234 -18.74896 -17.63915 -17.31130 -16.82650 -16.71579 -16.28279 -16.04722 -15.96892 -15.62646 -15.51451 -15.17600 -15.01523 -14.94899 -14.62676 -14.42952 -14.21926 -13.87460 -13.73363 -13.56260 -13.24494 -12.99075 -12.88429 -12.82063 -12.69244 -12.46936 -12.12105 -12.10622 -11.93938 -11.78275 -11.77278 -11.74894 -11.57972 -11.55761 -11.36480 -11.30368 -10.96174 -10.91792 -10.75242 -10.17309 -9.50083 -8.97756 -7.95003 -5.23005 0.22300 1.39858 1.46901 1.47586 1.57725 1.71453 2.21997 2.25636 2.56199 3.24045 3.38479 3.46677 3.55667 3.60434 3.64576 3.71061 3.84283 3.88663 4.03660 4.15650 4.17173 4.21450 4.28127 4.31781 4.39692 4.48200 4.50195 4.56364 4.60824 4.67204 4.74178 4.76080 4.79561 4.86433 4.91438 5.01286 5.03802 5.07302 5.12507 5.15027 5.15934 5.24435 5.27122 5.34424 5.39636 5.44999 5.48970 5.52210 5.56588 6.03398 6.28054 6.42357 6.85415 7.09503 7.34297 8.11846 8.35045 9.28763 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.001677 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.217844 B =16695.344656 C =17044.203250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.087 4.087 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.122 4.122 15 C 0.150 3.850 16 H 0.078 0.922 17 N -0.693 5.693 18 C 0.595 3.405 19 O -0.582 6.582 20 C -0.115 4.115 21 C 0.044 3.956 22 N -0.524 5.524 23 C 0.234 3.766 24 N -0.421 5.421 25 C 0.099 3.901 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.039 4.039 30 C -0.108 4.108 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.021 0.979 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.417 0.583 40 H 0.204 0.796 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.046 0.954 49 H 0.108 0.892 50 H 0.106 0.894 51 H 0.099 0.901 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -35.737 -6.314 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.030 3.970 11 C -0.106 4.106 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.160 4.160 15 C 0.046 3.954 16 H 0.096 0.904 17 N -0.344 5.344 18 C 0.383 3.617 19 O -0.463 6.463 20 C -0.231 4.231 21 C -0.111 4.111 22 N -0.242 5.242 23 C -0.028 4.028 24 N -0.101 5.101 25 C -0.023 4.023 26 C -0.173 4.173 27 C -0.158 4.158 28 C -0.158 4.158 29 C -0.078 4.078 30 C -0.147 4.147 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.221 0.779 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.065 0.935 49 H 0.126 0.874 50 H 0.125 0.875 51 H 0.117 0.883 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.807 -35.932 -6.678 36.592 hybrid contribution 0.152 2.205 -0.184 2.218 sum 1.959 -33.727 -6.862 34.474 Atomic orbital electron populations 1.69820 1.06547 1.25942 1.59674 1.25555 0.96427 1.01051 1.03839 0.85081 0.78195 0.79857 0.76682 1.19159 1.22109 1.21893 1.19689 0.91495 0.85559 1.40936 0.90828 1.42567 1.05682 1.01151 1.89263 1.20987 0.93826 0.84878 0.97334 1.21768 0.96952 0.93813 0.98063 0.90653 1.22241 1.00019 0.95671 0.96756 1.22815 0.97602 0.94705 1.00892 1.21749 0.97536 0.78351 0.97800 0.90394 1.45560 1.70592 1.05371 1.12926 1.16958 0.76569 0.83827 0.84390 1.90781 1.48844 1.82766 1.23910 1.20728 1.19918 0.89819 0.92642 1.23110 1.00324 0.90668 0.97029 1.70149 1.23152 1.14741 1.16206 1.24190 0.99916 0.91323 0.87355 1.45453 1.48389 1.06169 1.10130 1.22264 1.01769 1.02334 0.75892 1.22061 0.99524 0.94142 1.01530 1.21629 1.00199 0.97162 0.96811 1.21602 0.96122 1.03419 0.94675 1.20495 1.01024 0.86188 1.00099 1.22299 1.01285 0.93883 0.97216 0.94038 0.79332 0.96059 0.96667 0.92330 0.93107 0.92352 0.89838 0.74509 0.77911 0.89539 0.89629 0.90270 0.88132 0.88823 0.90978 0.88061 0.93497 0.87426 0.87528 0.88251 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -38.20 5.45 -343.45 -1.87 -40.07 16 10 C 0.16 6.20 5.32 86.38 0.46 6.66 16 11 C -0.09 -2.62 2.96 -10.07 -0.03 -2.65 16 12 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 13 C -0.11 -3.36 6.09 31.72 0.19 -3.17 16 14 C -0.12 -3.04 6.59 31.93 0.21 -2.83 16 15 C 0.15 3.48 3.22 46.07 0.15 3.63 16 16 H 0.08 2.16 7.54 -2.38 -0.02 2.15 16 17 N -0.69 -13.40 5.16 -441.32 -2.28 -15.68 16 18 C 0.59 14.42 7.78 86.47 0.67 15.09 16 19 O -0.58 -18.01 14.60 -4.29 -0.06 -18.07 16 20 C -0.11 -2.49 6.91 40.04 0.28 -2.22 16 21 C 0.04 0.84 11.37 84.11 0.96 1.79 16 22 N -0.52 -11.17 11.20 -187.05 -2.10 -13.27 16 23 C 0.23 4.19 6.83 138.23 0.94 5.13 16 24 N -0.42 -8.23 3.10 -501.44 -1.55 -9.79 16 25 C 0.10 1.59 5.82 86.40 0.50 2.09 16 26 C -0.14 -1.17 5.55 30.55 0.17 -1.00 16 27 C -0.12 -0.62 5.68 30.40 0.17 -0.45 16 28 C -0.12 -0.81 5.67 30.47 0.17 -0.64 16 29 C -0.04 -0.37 5.54 29.94 0.17 -0.21 16 30 C -0.11 -2.39 6.19 31.32 0.19 -2.20 16 31 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.37 20.33 7.55 -92.71 -0.70 19.63 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.02 0.63 8.01 -2.39 -0.02 0.61 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.79 7.76 -2.39 -0.02 1.77 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.42 5.39 7.30 -92.71 -0.68 4.72 16 40 H 0.20 2.45 7.47 -2.91 -0.02 2.43 16 41 H 0.09 1.78 6.66 -2.39 -0.02 1.76 16 42 H 0.09 1.36 7.81 -2.39 -0.02 1.34 16 43 H 0.08 0.72 5.69 -2.39 -0.01 0.71 16 44 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.07 0.38 8.09 -2.38 -0.02 0.36 16 47 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.05 0.51 7.84 -2.39 -0.02 0.50 16 49 H 0.11 0.70 6.30 -2.38 -0.02 0.68 16 50 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.10 1.63 7.72 -2.39 -0.02 1.61 16 52 H 0.08 1.74 7.67 -2.39 -0.02 1.72 16 Total: -1.00 -75.81 403.27 0.53 -75.29 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.44 Total: 30.45 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.52 Total: 1.94 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -7.51 Total: -138.44 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.06 Total: -18.07 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.81 0.53 -75.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284193487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.228 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds