Wall clock time and date at job start Sat Apr 11 2020 08:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47620 * 240.00181 * 3 2 1 5 5 H 1.48499 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46942 * 119.99923 * 3 2 1 7 7 C 1.38814 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99738 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46964 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43824 * 52.45838 * 11 10 9 13 13 C 1.54888 * 110.48603 * 289.77439 * 11 10 9 14 14 C 1.54895 * 102.74989 * 203.37961 * 13 11 10 15 15 C 1.54271 * 104.19288 * 37.94081 * 14 13 11 16 16 H 1.09003 * 110.07134 * 217.07982 * 15 14 13 17 17 N 1.46505 * 110.03028 * 95.67750 * 15 14 13 18 18 C 1.34769 * 119.99877 * 87.83307 * 17 15 14 19 19 O 1.21680 * 120.00557 * 5.07530 * 18 17 15 20 20 C 1.46770 * 120.00105 * 185.07353 * 18 17 15 21 21 C 1.36695 * 126.87340 * 354.73877 * 20 18 17 22 22 N 1.33308 * 107.78725 * 179.78933 * 21 20 18 23 23 C 1.30959 * 109.75666 * 359.78074 * 22 21 20 24 24 N 1.34543 * 108.94909 * 0.59800 * 23 22 21 25 25 C 1.46481 * 126.52307 * 178.98868 * 24 23 22 26 26 C 1.53035 * 109.55933 * 28.20412 * 25 24 23 27 27 C 1.52818 * 109.60394 * 270.61366 * 26 25 24 28 28 C 1.52524 * 110.32835 * 61.27122 * 27 26 25 29 29 C 1.50934 * 125.84685 * 181.13927 * 23 22 21 30 30 C 1.53872 * 106.60177 * 336.39308 * 15 14 13 31 31 H 0.96998 * 120.00016 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00217 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47767 * 59.99925 * 10 9 7 34 34 H 1.08998 * 109.47115 * 299.99519 * 10 9 7 35 35 H 1.09001 * 110.75437 * 321.69075 * 13 11 10 36 36 H 1.09000 * 110.75959 * 84.87855 * 13 11 10 37 37 H 1.08996 * 110.48605 * 279.26459 * 14 13 11 38 38 H 1.08993 * 110.49030 * 156.61729 * 14 13 11 39 39 H 0.96996 * 119.99665 * 267.82941 * 17 15 14 40 40 H 1.08001 * 126.10900 * 359.77470 * 21 20 18 41 41 H 1.08997 * 109.45621 * 268.17919 * 25 24 23 42 42 H 1.08993 * 109.45218 * 148.23292 * 25 24 23 43 43 H 1.09002 * 109.44370 * 30.64979 * 26 25 24 44 44 H 1.09004 * 109.44315 * 150.57935 * 26 25 24 45 45 H 1.08998 * 109.33378 * 181.49237 * 27 26 25 46 46 H 1.09000 * 109.33512 * 300.98495 * 27 26 25 47 47 H 1.09001 * 109.43792 * 273.35743 * 28 27 26 48 48 H 1.08997 * 109.45556 * 153.40741 * 28 27 26 49 49 H 1.09005 * 109.50179 * 346.37263 * 29 23 22 50 50 H 1.09003 * 109.49862 * 106.48083 * 29 23 22 51 51 H 1.08995 * 110.03668 * 119.28266 * 30 15 14 52 52 H 1.09005 * 110.03201 * 240.71556 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3430 -4.7047 -0.8095 13 6 0.3388 -4.9124 1.3658 14 6 -0.1118 -6.3936 1.4137 15 6 1.0596 -7.1663 0.7729 16 1 0.6789 -7.9939 0.1743 17 7 1.9567 -7.6722 1.8148 18 6 1.7232 -8.8731 2.3803 19 8 0.8233 -9.5776 1.9627 20 6 2.5544 -9.3312 3.4998 21 6 3.6564 -8.7059 4.0128 22 7 4.1131 -9.4481 5.0216 23 6 3.3540 -10.5045 5.1730 24 7 2.3803 -10.4795 4.2448 25 6 1.3327 -11.4852 4.0530 26 6 1.0338 -12.1743 5.3863 27 6 1.9482 -13.3874 5.5528 28 6 3.4097 -12.9514 5.5665 29 6 3.5274 -11.5743 6.2235 30 6 1.8070 -6.1657 -0.1258 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 2.6846 -3.7146 0.8894 34 1 2.6845 -3.7146 -0.8905 35 1 1.0251 -4.6908 2.1831 36 1 -0.5210 -4.2430 1.3930 37 1 -1.0239 -6.5338 0.8338 38 1 -0.2613 -6.7137 2.4448 39 1 2.7187 -7.1429 2.0977 40 1 4.0814 -7.7767 3.6631 41 1 1.6695 -12.2266 3.3286 42 1 0.4286 -11.0015 3.6835 43 1 1.2073 -11.4742 6.2036 44 1 -0.0066 -12.4992 5.4016 45 1 1.7136 -13.8901 6.4910 46 1 1.7853 -14.0783 4.7256 47 1 3.7821 -12.8987 4.5435 48 1 3.9989 -13.6744 6.1306 49 1 4.5094 -11.4744 6.6860 50 1 2.7538 -11.4664 6.9838 51 1 2.8371 -6.0564 0.2131 52 1 1.7883 -6.5071 -1.1608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284193490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:37 Heat of formation + Delta-G solvation = -5.561474 kcal Electronic energy + Delta-G solvation = -30327.504725 eV Core-core repulsion = 26326.135443 eV Total energy + Delta-G solvation = -4001.369282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.52571 -40.91534 -39.11061 -38.27502 -36.46864 -34.90877 -34.60925 -33.01071 -31.90631 -30.79061 -30.11176 -28.95834 -27.08752 -26.16105 -25.49968 -24.05142 -23.88891 -22.01499 -21.31903 -20.89566 -20.76868 -20.60207 -19.08376 -18.74115 -17.53814 -17.38716 -16.85523 -16.59626 -16.41654 -16.21268 -15.95399 -15.63039 -15.45794 -15.15779 -14.96658 -14.93715 -14.61280 -14.45030 -14.23125 -13.86966 -13.73443 -13.46165 -13.15413 -12.98900 -12.76758 -12.73208 -12.70110 -12.51530 -12.22208 -12.06604 -11.94977 -11.86008 -11.77264 -11.60623 -11.55202 -11.52786 -11.45345 -11.30645 -10.95020 -10.87728 -10.74881 -10.18025 -9.50656 -8.95780 -7.93025 -5.20969 0.21821 1.40236 1.47941 1.50909 1.56933 1.71449 2.22148 2.28262 2.57783 3.23696 3.40249 3.48265 3.56389 3.59840 3.63995 3.70242 3.84293 3.91673 4.04265 4.16786 4.17463 4.21796 4.27787 4.31922 4.44592 4.51840 4.52536 4.56547 4.60654 4.69130 4.74276 4.78229 4.79591 4.86881 4.93593 4.98388 5.02784 5.09377 5.13502 5.15234 5.16088 5.25068 5.27654 5.34495 5.38349 5.45288 5.48878 5.55414 5.59166 6.04000 6.29530 6.41262 6.84912 7.07967 7.35778 8.14200 8.36342 9.30407 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.001867 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.348531 B =14991.413304 C =15649.151168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.090 4.090 12 H 0.069 0.931 13 C -0.108 4.108 14 C -0.124 4.124 15 C 0.152 3.848 16 H 0.090 0.910 17 N -0.697 5.697 18 C 0.597 3.403 19 O -0.578 6.578 20 C -0.113 4.113 21 C 0.040 3.960 22 N -0.525 5.525 23 C 0.234 3.766 24 N -0.420 5.420 25 C 0.099 3.901 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.040 4.040 30 C -0.110 4.110 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.413 0.587 40 H 0.198 0.802 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -31.787 12.124 34.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.145 4.145 14 C -0.162 4.162 15 C 0.048 3.952 16 H 0.108 0.892 17 N -0.348 5.348 18 C 0.384 3.616 19 O -0.460 6.460 20 C -0.230 4.230 21 C -0.116 4.116 22 N -0.244 5.244 23 C -0.028 4.028 24 N -0.101 5.101 25 C -0.022 4.022 26 C -0.173 4.173 27 C -0.157 4.157 28 C -0.158 4.158 29 C -0.078 4.078 30 C -0.148 4.148 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.215 0.785 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.125 0.875 51 H 0.106 0.894 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.148 -32.130 12.256 34.771 hybrid contribution -0.521 1.656 -0.712 1.877 sum 4.627 -30.474 11.543 32.914 Atomic orbital electron populations 1.69809 1.06590 1.26037 1.59651 1.25565 0.96403 1.01112 1.03929 0.85219 0.77186 0.79225 0.78184 1.20397 1.22276 1.20413 1.19622 0.91518 0.85496 1.40982 0.90656 1.42572 1.05639 1.01209 1.89300 1.20879 0.93714 0.84570 0.97597 1.22049 0.97177 0.93914 0.97785 0.91272 1.22402 0.99565 0.95667 0.96891 1.22711 0.98176 0.94549 1.00788 1.21564 0.89574 0.96223 0.87862 0.89237 1.45776 1.30980 1.18398 1.39619 1.16881 0.82222 0.81542 0.80908 1.90759 1.34456 1.56142 1.64604 1.20758 1.04791 0.94184 1.03256 1.23056 0.93515 1.00764 0.94224 1.70140 1.28948 1.05440 1.19848 1.24201 0.86579 0.97746 0.94305 1.45454 1.23551 1.17107 1.23949 1.22283 0.89490 0.89751 1.00678 1.22067 1.02471 0.98289 0.94496 1.21611 0.93255 0.96646 1.04236 1.21586 0.98024 0.95319 1.00834 1.20497 1.05541 0.88925 0.92854 1.22361 0.99780 0.92220 1.00480 0.94102 0.79482 0.95843 0.96237 0.91979 0.93231 0.90357 0.92116 0.75002 0.78531 0.89398 0.89383 0.90501 0.87986 0.88902 0.90766 0.93395 0.88071 0.87670 0.87487 0.89442 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.67 5.49 -343.45 -1.89 -39.55 16 10 C 0.16 6.07 5.54 86.38 0.48 6.55 16 11 C -0.09 -2.70 2.89 -9.72 -0.03 -2.73 16 12 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.11 -3.20 6.19 31.89 0.20 -3.01 16 14 C -0.12 -3.08 6.54 31.67 0.21 -2.87 16 15 C 0.15 3.38 3.29 45.72 0.15 3.53 16 16 H 0.09 2.11 7.50 -2.39 -0.02 2.09 16 17 N -0.70 -14.51 5.02 -442.97 -2.22 -16.73 16 18 C 0.60 14.74 7.78 86.47 0.67 15.41 16 19 O -0.58 -17.22 14.57 -4.28 -0.06 -17.28 16 20 C -0.11 -2.63 6.91 40.05 0.28 -2.35 16 21 C 0.04 0.86 11.37 84.11 0.96 1.82 16 22 N -0.52 -12.37 11.20 -187.04 -2.10 -14.47 16 23 C 0.23 4.51 6.83 138.23 0.94 5.45 16 24 N -0.42 -8.56 3.10 -501.44 -1.55 -10.12 16 25 C 0.10 1.58 5.82 86.39 0.50 2.09 16 26 C -0.14 -1.19 5.55 30.55 0.17 -1.02 16 27 C -0.12 -0.63 5.67 30.38 0.17 -0.45 16 28 C -0.12 -0.87 5.67 30.45 0.17 -0.69 16 29 C -0.04 -0.42 5.54 29.93 0.17 -0.25 16 30 C -0.11 -2.41 6.14 31.32 0.19 -2.22 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.37 20.18 7.64 -92.71 -0.71 19.48 16 33 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.90 7.96 -2.39 -0.02 1.88 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 39 H 0.41 6.96 7.27 -92.71 -0.67 6.29 16 40 H 0.20 3.19 7.47 -2.91 -0.02 3.17 16 41 H 0.09 1.35 7.82 -2.39 -0.02 1.33 16 42 H 0.09 1.76 6.66 -2.39 -0.02 1.75 16 43 H 0.08 0.75 5.68 -2.39 -0.01 0.74 16 44 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 47 H 0.05 0.54 7.85 -2.39 -0.02 0.52 16 48 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.11 0.83 6.30 -2.39 -0.02 0.81 16 51 H 0.09 1.72 7.31 -2.39 -0.02 1.70 16 52 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -74.09 403.56 0.58 -73.50 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.45 Total: 33.41 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.54 Total: 2.36 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -7.47 Total: -140.43 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.06 Total: -17.28 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.09 0.58 -73.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284193490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.942 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds