Wall clock time and date at job start Sat Apr 11 2020 08:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48495 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47044 * 299.99836 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99675 * 3 2 1 7 7 C 1.38808 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00612 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47870 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.53014 * 52.38682 * 11 10 9 13 13 C 1.54892 * 110.48778 * 289.77853 * 11 10 9 14 14 C 1.54958 * 102.77547 * 203.40181 * 13 11 10 15 15 C 1.54264 * 104.16146 * 37.88354 * 14 13 11 16 16 H 1.09008 * 110.03117 * 95.75815 * 15 14 13 17 17 N 1.46505 * 110.03418 * 217.13554 * 15 14 13 18 18 C 1.34778 * 119.99822 * 272.90835 * 17 15 14 19 19 O 1.21676 * 120.00225 * 5.08089 * 18 17 15 20 20 C 1.46758 * 119.99750 * 185.07651 * 18 17 15 21 21 C 1.36694 * 126.88099 * 354.76675 * 20 18 17 22 22 N 1.33313 * 107.79114 * 180.02562 * 21 20 18 23 23 C 1.30952 * 109.75571 * 359.77801 * 22 21 20 24 24 N 1.34538 * 108.94760 * 0.57168 * 23 22 21 25 25 C 1.46483 * 126.52378 * 178.86424 * 24 23 22 26 26 C 1.53030 * 109.57605 * 28.20606 * 25 24 23 27 27 C 1.52825 * 109.60536 * 270.60469 * 26 25 24 28 28 C 1.52581 * 110.30001 * 61.24512 * 27 26 25 29 29 C 1.50945 * 125.85432 * 180.98113 * 23 22 21 30 30 C 1.53871 * 106.64356 * 336.44723 * 15 14 13 31 31 H 0.96994 * 120.00478 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99794 * 359.97438 * 9 7 2 33 33 H 1.09010 * 109.46839 * 59.99298 * 10 9 7 34 34 H 1.09001 * 109.47010 * 300.00496 * 10 9 7 35 35 H 1.08998 * 110.75504 * 321.68936 * 13 11 10 36 36 H 1.09001 * 110.75497 * 84.87357 * 13 11 10 37 37 H 1.09004 * 110.47965 * 279.23467 * 14 13 11 38 38 H 1.08995 * 110.53143 * 156.56874 * 14 13 11 39 39 H 0.96996 * 119.99943 * 92.91412 * 17 15 14 40 40 H 1.07995 * 126.10689 * 0.04617 * 21 20 18 41 41 H 1.08997 * 109.44586 * 148.23921 * 25 24 23 42 42 H 1.08993 * 109.45350 * 268.19077 * 25 24 23 43 43 H 1.09000 * 109.45404 * 30.64964 * 26 25 24 44 44 H 1.09003 * 109.45005 * 150.59225 * 26 25 24 45 45 H 1.08998 * 109.33610 * 181.50475 * 27 26 25 46 46 H 1.09007 * 109.32956 * 301.16336 * 27 26 25 47 47 H 1.08998 * 109.45614 * 153.43949 * 28 27 26 48 48 H 1.08992 * 109.45572 * 273.38142 * 28 27 26 49 49 H 1.09001 * 109.50265 * 106.63616 * 29 23 22 50 50 H 1.08998 * 109.53984 * 346.53208 * 29 23 22 51 51 H 1.09002 * 110.03212 * 119.25547 * 30 15 14 52 52 H 1.09001 * 110.03336 * 240.64269 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0642 -4.8197 0.0021 12 1 0.3425 -4.7061 -0.8069 13 6 0.3382 -4.9119 1.3672 14 6 -0.1123 -6.3938 1.4164 15 6 1.0596 -7.1659 0.7758 16 1 1.7267 -7.5427 1.5512 17 7 0.5477 -8.2780 -0.0289 18 6 0.3067 -9.4721 0.5477 19 8 0.4257 -9.6014 1.7517 20 6 -0.0992 -10.6164 -0.2766 21 6 -0.3710 -10.6071 -1.6162 22 7 -0.7021 -11.8481 -1.9733 23 6 -0.6484 -12.6381 -0.9303 24 7 -0.2881 -11.9162 0.1463 25 6 -0.1342 -12.4114 1.5163 26 6 0.2500 -13.8924 1.4861 27 6 -1.0147 -14.7503 1.4864 28 6 -1.8542 -14.4563 0.2467 29 6 -0.9329 -14.1205 -0.9283 30 6 1.8077 -6.1656 -0.1228 31 1 -0.4850 0.8400 -0.0004 32 1 0.3558 -2.3881 0.0005 33 1 2.6844 -3.7140 0.8922 34 1 2.6857 -3.7148 -0.8878 35 1 1.0237 -4.6899 2.1850 36 1 -0.5217 -4.2426 1.3934 37 1 -1.0243 -6.5346 0.8362 38 1 -0.2618 -6.7139 2.4475 39 1 0.3822 -8.1549 -0.9767 40 1 -0.3252 -9.7479 -2.2689 41 1 0.6471 -11.8438 2.0217 42 1 -1.0750 -12.2916 2.0534 43 1 0.8285 -14.0990 0.5857 44 1 0.8494 -14.1299 2.3650 45 1 -0.7359 -15.8041 1.4918 46 1 -1.6015 -14.5277 2.3776 47 1 -2.4545 -15.3316 -0.0013 48 1 -2.5117 -13.6101 0.4458 49 1 0.0026 -14.6704 -0.8261 50 1 -1.4189 -14.3996 -1.8632 51 1 2.8376 -6.0562 0.2171 52 1 1.7905 -6.5079 -1.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284193494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:43 Heat of formation + Delta-G solvation = 15.256355 kcal Electronic energy + Delta-G solvation = -30085.362601 eV Core-core repulsion = 26084.896048 eV Total energy + Delta-G solvation = -4000.466553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.79133 -39.88383 -37.98239 -37.75866 -34.92095 -34.08318 -33.46957 -31.46668 -31.06752 -29.96466 -28.78723 -27.78854 -26.37447 -25.03704 -24.33510 -23.14279 -22.16515 -21.01202 -20.54337 -20.33409 -19.98473 -19.61186 -17.97787 -17.02197 -16.80167 -16.42843 -15.97125 -15.74496 -15.45056 -15.02930 -14.85653 -14.42690 -14.39807 -14.25161 -13.92617 -13.68417 -13.41812 -13.36861 -13.21938 -13.00956 -12.79389 -12.48444 -12.27547 -12.18039 -11.83927 -11.52870 -11.39634 -11.31596 -11.14688 -11.07518 -10.85624 -10.71889 -10.57864 -10.56084 -10.27691 -10.22152 -10.04903 -9.97922 -9.91898 -9.65852 -9.21855 -8.84731 -8.72844 -6.88334 -5.74299 -3.02334 1.03107 2.13561 2.49902 3.09263 3.12155 3.44691 3.50318 3.52557 3.81035 4.01329 4.09272 4.20457 4.41089 4.53926 4.59208 4.66702 4.72131 4.72690 4.78816 4.81858 4.92093 5.04089 5.04627 5.16422 5.22771 5.26833 5.40128 5.45770 5.52375 5.53688 5.57215 5.61234 5.64283 5.65499 5.69015 5.85802 5.88516 5.89963 6.09914 6.14605 6.19617 6.27111 6.31862 6.50064 6.56983 6.61256 6.71694 6.82492 6.95566 7.28407 7.61434 7.72717 7.98028 8.45004 9.56168 10.15302 10.49834 11.48769 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.001666 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.385211 B =16800.028126 C =17100.164299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.160 3.840 11 C -0.097 4.097 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.145 3.855 16 H 0.090 0.910 17 N -0.708 5.708 18 C 0.594 3.406 19 O -0.547 6.547 20 C -0.088 4.088 21 C 0.039 3.961 22 N -0.494 5.494 23 C 0.230 3.770 24 N -0.416 5.416 25 C 0.100 3.900 26 C -0.142 4.142 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.039 4.039 30 C -0.123 4.123 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.179 0.821 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -33.922 0.933 33.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.171 4.171 15 C 0.041 3.959 16 H 0.108 0.892 17 N -0.359 5.359 18 C 0.381 3.619 19 O -0.426 6.426 20 C -0.205 4.205 21 C -0.116 4.116 22 N -0.212 5.212 23 C -0.031 4.031 24 N -0.096 5.096 25 C -0.021 4.021 26 C -0.179 4.179 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.077 4.077 30 C -0.161 4.161 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.196 0.804 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.118 0.882 51 H 0.096 0.904 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.944 -34.199 1.209 34.275 hybrid contribution 0.229 1.457 0.311 1.507 sum -1.716 -32.742 1.520 32.822 Atomic orbital electron populations 1.69666 1.05089 1.25467 1.58049 1.24733 0.95521 0.97664 1.03200 0.86126 0.78778 0.84200 0.77157 1.20591 1.21912 1.21916 1.19290 0.91064 0.84255 1.42269 0.91191 1.42353 1.05877 0.99958 1.89391 1.20698 0.93072 0.85347 0.97660 1.22152 0.97836 0.93650 0.97920 0.90574 1.22485 1.00656 0.94387 0.97378 1.22801 0.97629 0.95876 1.00844 1.21770 0.95576 0.85181 0.93325 0.89211 1.45918 1.66471 1.10345 1.13141 1.16772 0.76941 0.81783 0.86444 1.90787 1.53191 1.84414 1.14203 1.20762 1.17390 0.86562 0.95819 1.22655 1.01336 0.95995 0.91642 1.70108 1.21288 1.01812 1.27980 1.23449 1.01457 0.96331 0.81900 1.45254 1.47898 1.06894 1.09592 1.22179 1.04558 0.95691 0.79683 1.22058 0.98907 0.92748 1.04221 1.21637 0.95941 1.00216 0.98470 1.21615 0.98040 1.02594 0.94077 1.20277 1.01252 0.85280 1.00941 1.22442 0.99899 0.94555 0.99226 0.93616 0.78274 0.96277 0.96511 0.91195 0.90842 0.91420 0.91442 0.76260 0.80404 0.87407 0.89432 0.90161 0.89365 0.90891 0.91164 0.90149 0.91543 0.89079 0.88208 0.90376 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.46 5.49 -59.91 -0.33 -18.79 16 10 C 0.16 3.15 5.54 -4.04 -0.02 3.13 16 11 C -0.10 -1.48 2.89 -88.96 -0.26 -1.74 16 12 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 13 C -0.11 -1.68 6.19 -24.70 -0.15 -1.84 16 14 C -0.13 -1.72 6.54 -25.04 -0.16 -1.89 16 15 C 0.15 1.72 3.19 -66.81 -0.21 1.50 16 16 H 0.09 1.15 7.66 -51.92 -0.40 0.75 16 17 N -0.71 -7.43 5.03 -54.00 -0.27 -7.70 16 18 C 0.59 7.26 7.77 -12.82 -0.10 7.16 16 19 O -0.55 -8.10 14.67 5.21 0.08 -8.03 16 20 C -0.09 -0.99 6.91 -82.21 -0.57 -1.56 16 21 C 0.04 0.41 11.37 -17.47 -0.20 0.21 16 22 N -0.49 -5.68 11.20 -10.47 -0.12 -5.80 16 23 C 0.23 2.21 6.83 -155.38 -1.06 1.15 16 24 N -0.42 -4.16 3.10 -109.85 -0.34 -4.50 16 25 C 0.10 0.80 5.82 -4.04 -0.02 0.77 16 26 C -0.14 -0.69 5.55 -26.81 -0.15 -0.84 16 27 C -0.13 -0.46 5.68 -27.04 -0.15 -0.61 16 28 C -0.12 -0.57 5.67 -26.92 -0.15 -0.72 16 29 C -0.04 -0.23 5.54 -27.74 -0.15 -0.38 16 30 C -0.12 -1.46 6.14 -25.62 -0.16 -1.62 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.15 7.64 -40.82 -0.31 9.84 16 33 H 0.02 0.39 8.02 -51.92 -0.42 -0.03 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 3.31 7.26 -40.82 -0.30 3.02 16 40 H 0.18 1.37 7.47 -52.49 -0.39 0.97 16 41 H 0.11 1.02 6.66 -51.93 -0.35 0.67 16 42 H 0.09 0.68 7.81 -51.93 -0.41 0.27 16 43 H 0.08 0.42 5.69 -51.93 -0.30 0.13 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.25 8.09 -51.92 -0.42 -0.17 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 49 H 0.09 0.41 6.30 -51.93 -0.33 0.08 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.92 7.84 -51.93 -0.41 0.52 16 52 H 0.07 0.72 7.61 -51.93 -0.40 0.32 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -34.38 403.72 -11.55 -45.93 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.58 Total: 7.57 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -3.77 Total: -4.65 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.33 Total: -64.45 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.38 -11.55 -45.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284193494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.186 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds