Wall clock time and date at job start Sat Apr 11 2020 08:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21696 * 120.00155 * 359.97438 * 16 15 14 18 18 C 1.46679 * 119.99924 * 180.02562 * 16 15 14 19 19 C 1.38051 * 126.20177 * 180.02562 * 18 16 15 20 20 C 1.39251 * 106.97202 * 179.97438 * 19 18 16 21 21 C 1.35963 * 108.04068 * 0.03577 * 20 19 18 22 22 N 1.35115 * 108.76626 * 359.69886 * 21 20 19 23 23 H 0.96996 * 125.68304 * 180.30807 * 22 21 20 24 24 C 1.51027 * 123.84755 * 179.88402 * 21 20 19 25 25 C 1.53320 * 108.41247 * 343.31435 * 24 21 20 26 26 C 1.53107 * 109.52492 * 50.18234 * 25 24 21 27 27 C 1.50840 * 127.70120 * 180.13813 * 20 19 18 28 28 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 29 29 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 30 30 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 32 32 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 33 33 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 34 34 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 35 35 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 36 36 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 37 37 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 38 38 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 39 39 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 40 40 H 1.07999 * 126.51749 * 359.96211 * 19 18 16 41 41 H 1.08996 * 109.67672 * 103.04824 * 24 21 20 42 42 H 1.09000 * 109.67238 * 223.58941 * 24 21 20 43 43 H 1.08992 * 109.46113 * 170.19823 * 25 24 21 44 44 H 1.08995 * 109.46303 * 290.16522 * 25 24 21 45 45 H 1.08994 * 109.47468 * 49.59579 * 26 25 24 46 46 H 1.08997 * 109.47307 * 169.59841 * 26 25 24 47 47 H 1.08999 * 109.68085 * 283.15636 * 27 20 19 48 48 H 1.09003 * 109.68372 * 43.71124 * 27 20 19 49 49 H 1.09002 * 109.49547 * 303.14748 * 28 12 11 50 50 H 1.08995 * 109.52035 * 183.08143 * 28 12 11 51 51 H 1.09001 * 109.62421 * 350.92205 * 29 9 7 52 52 H 1.09004 * 109.62775 * 111.49497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2995 -9.4976 -1.8438 18 6 1.9896 -10.2804 -4.0138 19 6 2.4475 -11.5726 -3.8518 20 6 2.3307 -12.2033 -5.0878 21 6 1.8147 -11.3071 -5.9706 22 7 1.5983 -10.1387 -5.3275 23 1 1.2309 -9.3338 -5.7249 24 6 1.5422 -11.6186 -7.4231 25 6 2.3090 -12.8924 -7.7973 26 6 2.0200 -13.9856 -6.7651 27 6 2.6950 -13.6249 -5.4361 28 6 2.0033 -4.6196 -1.0151 29 6 1.8311 -3.6610 0.1680 30 1 -0.4850 0.8401 0.0004 31 1 0.0843 -1.3448 -1.6648 32 1 -0.6924 -2.6163 -0.6879 33 1 -0.4576 -3.4322 -2.9821 34 1 1.2744 -3.0196 -2.9890 35 1 -0.1811 -5.8894 -3.2168 36 1 1.4641 -5.3596 -3.6417 37 1 2.3911 -6.7989 -1.8480 38 1 0.7458 -7.3288 -1.4230 39 1 1.1560 -7.8207 -4.1735 40 1 2.8248 -12.0112 -2.9398 41 1 0.4739 -11.7767 -7.5703 42 1 1.8805 -10.7903 -8.0457 43 1 1.9914 -13.2309 -8.7834 44 1 3.3782 -12.6813 -7.8129 45 1 0.9436 -14.0683 -6.6151 46 1 2.4108 -14.9374 -7.1247 47 1 3.7767 -13.7121 -5.5386 48 1 2.3447 -14.2964 -4.6522 49 1 2.8148 -4.2685 -1.6525 50 1 2.2381 -5.6171 -0.6438 51 1 2.7856 -3.5347 0.6790 52 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316971362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:52 Heat of formation + Delta-G solvation = 29.254962 kcal Electronic energy + Delta-G solvation = -29658.930209 eV Core-core repulsion = 25659.070681 eV Total energy + Delta-G solvation = -3999.859528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.93635 -39.53805 -38.25709 -36.69523 -35.52251 -34.02103 -32.56008 -31.44464 -30.40249 -29.75755 -29.23749 -28.35183 -26.10567 -24.39427 -23.53279 -22.76443 -22.41567 -21.74626 -21.23421 -20.28322 -19.14798 -18.90516 -18.57458 -16.89573 -16.25785 -16.09316 -15.82684 -15.39242 -15.02685 -14.65932 -14.55445 -14.33718 -14.28237 -14.02193 -13.92493 -13.69199 -13.53194 -13.44743 -13.36645 -13.01497 -12.89073 -12.70235 -12.51573 -12.20054 -11.72525 -11.42635 -11.37180 -11.31110 -11.16969 -11.06112 -10.93994 -10.75026 -10.47760 -10.35609 -10.26893 -10.06689 -9.76192 -9.63537 -9.28171 -9.10241 -8.52178 -8.25570 -7.91025 -6.67767 -5.79124 -3.20011 1.18511 2.34070 2.64948 2.87672 3.20637 3.36175 3.44208 3.46499 4.20395 4.34550 4.38200 4.42402 4.49873 4.57123 4.71093 4.82337 4.90247 5.04846 5.06999 5.09149 5.12729 5.20426 5.38136 5.39987 5.41660 5.45074 5.49249 5.56260 5.69100 5.78522 5.82589 5.86728 5.88124 5.90742 5.91098 5.97172 6.11104 6.17060 6.19273 6.31611 6.49464 6.50849 6.62924 6.66900 6.92679 7.00243 7.20725 7.26813 7.50403 7.59901 7.66802 7.80315 7.98063 8.42465 9.20478 9.83800 10.42258 11.29874 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.001598 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.857917 B =17518.464680 C =17901.435497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.595 5.595 10 C 0.178 3.822 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.044 3.956 14 C 0.116 3.884 15 N -0.730 5.730 16 C 0.589 3.411 17 O -0.526 6.526 18 C -0.056 4.056 19 C -0.096 4.096 20 C -0.175 4.175 21 C 0.050 3.950 22 N -0.532 5.532 23 H 0.414 0.586 24 C -0.054 4.054 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.047 4.047 28 C 0.034 3.966 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.391 0.609 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -26.417 -18.488 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.084 4.084 14 C -0.007 4.007 15 N -0.382 5.382 16 C 0.376 3.624 17 O -0.402 6.402 18 C -0.168 4.168 19 C -0.122 4.122 20 C -0.182 4.182 21 C -0.068 4.068 22 N -0.128 5.128 23 H 0.251 0.749 24 C -0.092 4.092 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.085 4.085 28 C -0.095 4.095 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.224 0.776 40 H 0.166 0.834 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.047 0.953 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.663 -26.358 -17.305 31.575 hybrid contribution 0.631 1.763 -1.211 2.230 sum 2.293 -24.595 -18.517 30.871 Atomic orbital electron populations 1.70039 1.05199 1.25344 1.54261 1.25022 0.95316 0.98354 1.01097 0.86225 0.79325 0.83979 0.77271 1.20316 1.21619 1.21688 1.19250 0.92639 0.84756 1.41392 0.91558 1.44134 1.34100 1.01304 1.52345 1.20858 0.89083 0.96503 0.88402 1.22927 0.98641 0.88927 0.98737 1.62032 1.34498 1.05742 1.22982 1.22252 1.00356 0.91626 0.94209 1.21614 1.02406 0.86297 0.90371 1.45860 1.66238 1.12151 1.13907 1.17014 0.77585 0.80865 0.86940 1.90867 1.48366 1.80298 1.20662 1.20415 1.14749 0.97549 0.84134 1.21025 1.01554 0.91410 0.98221 1.19282 1.09111 0.96672 0.93086 1.20472 1.04927 0.85945 0.95432 1.41706 1.49866 1.12454 1.08758 0.74916 1.20327 1.01244 0.98875 0.88752 1.21516 1.00648 0.94063 0.98861 1.21601 1.01110 0.98120 0.94934 1.20063 1.00125 0.91395 0.96904 1.22807 0.89602 0.99942 0.97173 1.20992 0.97912 0.86384 0.92579 0.93678 0.89262 0.95455 0.92083 0.95576 0.90719 0.95039 0.90588 0.90119 0.77565 0.83449 0.90171 0.90646 0.91102 0.91325 0.91687 0.91475 0.91194 0.90983 0.95330 0.91187 0.92510 0.95494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.15 55.49 0.62 -25.67 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.95 9.63 -15.06 -0.15 -7.10 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -15.19 3.04 -172.01 -0.52 -15.71 16 10 C 0.18 4.27 5.42 -3.60 -0.02 4.25 16 11 C 0.04 0.70 5.58 -3.70 -0.02 0.68 16 12 N -0.53 -9.16 4.78 -234.33 -1.12 -10.28 16 13 C 0.04 0.58 5.38 -3.82 -0.02 0.56 16 14 C 0.12 1.49 4.93 -4.04 -0.02 1.47 16 15 N -0.73 -7.77 5.55 -61.62 -0.34 -8.12 16 16 C 0.59 7.60 7.79 -12.85 -0.10 7.50 16 17 O -0.53 -8.87 16.88 5.19 0.09 -8.78 16 18 C -0.06 -0.61 7.06 -81.84 -0.58 -1.18 16 19 C -0.10 -1.04 10.62 -39.27 -0.42 -1.45 16 20 C -0.18 -1.55 5.91 -104.99 -0.62 -2.17 16 21 C 0.05 0.38 7.02 -81.80 -0.57 -0.19 16 22 N -0.53 -4.04 5.98 -5.49 -0.03 -4.07 16 23 H 0.41 1.94 8.19 -40.82 -0.33 1.60 16 24 C -0.05 -0.25 6.30 -27.56 -0.17 -0.43 16 25 C -0.11 -0.48 5.89 -26.51 -0.16 -0.64 16 26 C -0.12 -0.58 5.90 -26.49 -0.16 -0.73 16 27 C -0.05 -0.31 6.28 -27.63 -0.17 -0.48 16 28 C 0.03 0.61 5.04 -3.71 -0.02 0.60 16 29 C 0.15 3.20 6.69 -3.60 -0.02 3.18 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.08 1.07 6.18 -51.92 -0.32 0.75 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 2.91 7.60 -40.82 -0.31 2.60 16 40 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 45 H 0.06 0.33 8.11 -51.93 -0.42 -0.09 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 1.13 5.73 -51.93 -0.30 0.83 16 51 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 52 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -33.60 404.80 -12.27 -45.86 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.72 Total: 0.17 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -3.30 Total: 3.79 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -1.40 Total: -63.85 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.60 -12.27 -45.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316971362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.115 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds