Wall clock time and date at job start Sat Apr 11 2020 08:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21696 * 120.00155 * 359.97438 * 16 15 14 18 18 C 1.46679 * 119.99924 * 180.02562 * 16 15 14 19 19 C 1.38051 * 126.20177 * 180.02562 * 18 16 15 20 20 C 1.39251 * 106.97202 * 179.97438 * 19 18 16 21 21 C 1.35963 * 108.04068 * 0.03577 * 20 19 18 22 22 N 1.35115 * 108.76626 * 359.69886 * 21 20 19 23 23 H 0.96996 * 125.68304 * 180.30807 * 22 21 20 24 24 C 1.51027 * 123.84755 * 179.88402 * 21 20 19 25 25 C 1.53320 * 108.41247 * 343.31435 * 24 21 20 26 26 C 1.53107 * 109.52492 * 50.18234 * 25 24 21 27 27 C 1.50840 * 127.70120 * 180.13813 * 20 19 18 28 28 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 29 29 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 30 30 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 32 32 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 33 33 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 34 34 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 35 35 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 36 36 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 37 37 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 38 38 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 39 39 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 40 40 H 1.07999 * 126.51749 * 359.96211 * 19 18 16 41 41 H 1.08996 * 109.67672 * 103.04824 * 24 21 20 42 42 H 1.09000 * 109.67238 * 223.58941 * 24 21 20 43 43 H 1.08992 * 109.46113 * 170.19823 * 25 24 21 44 44 H 1.08995 * 109.46303 * 290.16522 * 25 24 21 45 45 H 1.08994 * 109.47468 * 49.59579 * 26 25 24 46 46 H 1.08997 * 109.47307 * 169.59841 * 26 25 24 47 47 H 1.08999 * 109.68085 * 283.15636 * 27 20 19 48 48 H 1.09003 * 109.68372 * 43.71124 * 27 20 19 49 49 H 1.09002 * 109.49547 * 303.14748 * 28 12 11 50 50 H 1.08995 * 109.52035 * 183.08143 * 28 12 11 51 51 H 1.09001 * 109.62421 * 350.92205 * 29 9 7 52 52 H 1.09004 * 109.62775 * 111.49497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2995 -9.4976 -1.8438 18 6 1.9896 -10.2804 -4.0138 19 6 2.4475 -11.5726 -3.8518 20 6 2.3307 -12.2033 -5.0878 21 6 1.8147 -11.3071 -5.9706 22 7 1.5983 -10.1387 -5.3275 23 1 1.2309 -9.3338 -5.7249 24 6 1.5422 -11.6186 -7.4231 25 6 2.3090 -12.8924 -7.7973 26 6 2.0200 -13.9856 -6.7651 27 6 2.6950 -13.6249 -5.4361 28 6 2.0033 -4.6196 -1.0151 29 6 1.8311 -3.6610 0.1680 30 1 -0.4850 0.8401 0.0004 31 1 0.0843 -1.3448 -1.6648 32 1 -0.6924 -2.6163 -0.6879 33 1 -0.4576 -3.4322 -2.9821 34 1 1.2744 -3.0196 -2.9890 35 1 -0.1811 -5.8894 -3.2168 36 1 1.4641 -5.3596 -3.6417 37 1 2.3911 -6.7989 -1.8480 38 1 0.7458 -7.3288 -1.4230 39 1 1.1560 -7.8207 -4.1735 40 1 2.8248 -12.0112 -2.9398 41 1 0.4739 -11.7767 -7.5703 42 1 1.8805 -10.7903 -8.0457 43 1 1.9914 -13.2309 -8.7834 44 1 3.3782 -12.6813 -7.8129 45 1 0.9436 -14.0683 -6.6151 46 1 2.4108 -14.9374 -7.1247 47 1 3.7767 -13.7121 -5.5386 48 1 2.3447 -14.2964 -4.6522 49 1 2.8148 -4.2685 -1.6525 50 1 2.2381 -5.6171 -0.6438 51 1 2.7856 -3.5347 0.6790 52 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316971362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:51 Heat of formation + Delta-G solvation = 6.150166 kcal Electronic energy + Delta-G solvation = -29659.932108 eV Core-core repulsion = 25659.070681 eV Total energy + Delta-G solvation = -4000.861427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.61875 -40.57387 -39.71440 -37.17001 -36.95233 -35.48837 -33.33287 -33.11919 -31.91085 -30.80047 -29.96911 -29.41737 -27.66822 -25.50759 -24.82216 -24.16188 -23.32848 -22.64004 -22.22642 -21.17223 -20.81490 -19.46285 -19.38784 -18.75456 -17.36861 -16.92343 -16.89918 -16.74846 -16.07473 -16.03282 -15.78154 -15.44502 -15.33771 -15.20284 -14.94148 -14.76645 -14.70783 -14.62712 -14.41317 -14.06919 -13.95210 -13.49452 -13.26885 -13.17995 -13.04686 -13.02329 -12.67815 -12.64109 -12.47168 -12.29263 -12.05504 -11.93160 -11.65485 -11.55054 -11.54125 -11.49875 -11.34126 -11.31045 -10.61349 -10.31750 -9.80766 -9.32832 -8.92853 -8.70587 -7.89696 -5.34327 0.37364 1.44827 1.46430 1.57344 1.65423 1.86694 2.07685 2.29231 2.49282 3.03339 3.25877 3.64074 3.68815 3.77589 3.85795 3.98515 4.00319 4.09469 4.18704 4.25567 4.30500 4.37690 4.39711 4.52331 4.53977 4.59323 4.66739 4.69066 4.71380 4.73877 4.81935 4.85180 4.89650 4.98331 5.00144 5.09992 5.13545 5.14653 5.19560 5.24699 5.33442 5.34667 5.38275 5.54313 5.59571 5.67340 5.83136 5.90866 6.09154 6.16786 6.35229 6.36107 6.54474 7.04341 7.11658 7.81580 8.35860 9.17374 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.001598 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.857917 B =17518.464680 C =17901.435497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.183 3.817 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.054 3.946 14 C 0.125 3.875 15 N -0.713 5.713 16 C 0.588 3.412 17 O -0.576 6.576 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.193 4.193 21 C 0.065 3.935 22 N -0.518 5.518 23 H 0.429 0.571 24 C -0.053 4.053 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.049 4.049 28 C 0.048 3.952 29 C 0.142 3.858 30 H 0.251 0.749 31 H 0.059 0.941 32 H -0.001 1.001 33 H 0.088 0.912 34 H 0.024 0.976 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.026 0.974 50 H 0.091 0.909 51 H 0.058 0.942 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -27.538 -21.777 35.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.074 4.074 14 C 0.001 3.999 15 N -0.365 5.365 16 C 0.378 3.622 17 O -0.455 6.455 18 C -0.190 4.190 19 C -0.142 4.142 20 C -0.199 4.199 21 C -0.054 4.054 22 N -0.115 5.115 23 H 0.269 0.731 24 C -0.091 4.091 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.087 4.087 28 C -0.081 4.081 29 C 0.016 3.984 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.017 0.983 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.246 0.754 40 H 0.153 0.847 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.044 0.956 50 H 0.109 0.891 51 H 0.077 0.923 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.846 -27.483 -20.646 34.424 hybrid contribution 0.557 2.000 -0.187 2.084 sum 2.403 -25.483 -20.833 33.002 Atomic orbital electron populations 1.70194 1.06618 1.25850 1.55464 1.25788 0.96102 1.01453 1.01238 0.85184 0.78486 0.79730 0.76885 1.19273 1.21373 1.21915 1.19567 0.92891 0.85986 1.41060 0.91610 1.44415 1.34285 1.02013 1.53096 1.20653 0.87772 0.96563 0.89318 1.22594 0.99835 0.88525 0.96598 1.61919 1.34188 1.05759 1.24659 1.22237 1.02118 0.89938 0.93140 1.21360 1.01273 0.86643 0.90585 1.45600 1.65481 1.11033 1.14426 1.17279 0.76785 0.81494 0.86688 1.90835 1.50744 1.81218 1.22748 1.20046 1.16874 0.96998 0.85126 1.21173 1.02057 0.92111 0.98888 1.19594 1.09682 0.98083 0.92538 1.21038 1.02551 0.85190 0.96644 1.41639 1.49077 1.13235 1.07512 0.73119 1.20509 1.02320 0.99742 0.86549 1.21548 1.00392 0.93569 0.99549 1.21601 1.00831 0.99073 0.94032 1.20130 1.00424 0.90113 0.98033 1.22583 0.89916 0.99794 0.95801 1.21131 0.97408 0.85707 0.94108 0.93994 0.92232 0.98308 0.89362 0.95758 0.88462 0.93406 0.91866 0.91603 0.75355 0.84721 0.88668 0.88833 0.89122 0.91787 0.91795 0.90214 0.91097 0.91267 0.95563 0.89057 0.92329 0.96680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 11.15 21.65 0.24 -55.55 16 2 C -0.05 -2.85 4.93 84.86 0.42 -2.44 16 3 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.91 9.63 84.03 0.81 -14.10 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -31.87 3.04 -698.12 -2.12 -33.99 16 10 C 0.18 8.97 5.42 86.35 0.47 9.44 16 11 C 0.05 1.98 5.58 86.38 0.48 2.46 16 12 N -0.54 -17.86 4.78 -895.27 -4.28 -22.14 16 13 C 0.05 1.25 5.38 86.30 0.46 1.71 16 14 C 0.13 3.01 4.93 86.38 0.43 3.43 16 15 N -0.71 -13.95 5.55 -467.08 -2.59 -16.55 16 16 C 0.59 15.03 7.79 86.45 0.67 15.70 16 17 O -0.58 -20.00 16.88 -4.34 -0.07 -20.07 16 18 C -0.08 -1.64 7.06 40.37 0.29 -1.35 16 19 C -0.12 -2.54 10.62 22.47 0.24 -2.30 16 20 C -0.19 -3.24 5.91 -20.11 -0.12 -3.36 16 21 C 0.07 0.84 7.02 41.63 0.29 1.13 16 22 N -0.52 -6.72 5.98 -171.29 -1.02 -7.75 16 23 H 0.43 2.66 8.19 -92.71 -0.76 1.90 16 24 C -0.05 -0.31 6.30 30.06 0.19 -0.12 16 25 C -0.11 -0.59 5.89 30.74 0.18 -0.41 16 26 C -0.12 -0.86 5.90 30.75 0.18 -0.67 16 27 C -0.05 -0.59 6.28 30.01 0.19 -0.40 16 28 C 0.05 1.69 5.04 86.38 0.44 2.13 16 29 C 0.14 6.22 6.69 86.35 0.58 6.80 16 30 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.06 3.25 6.12 -2.39 -0.01 3.24 16 32 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.09 2.78 8.11 -2.38 -0.02 2.76 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 37 H 0.06 1.71 6.18 -2.38 -0.01 1.70 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.41 4.88 7.60 -92.71 -0.70 4.18 16 40 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.06 0.42 8.11 -2.39 -0.02 0.40 16 45 H 0.06 0.49 8.11 -2.39 -0.02 0.47 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.09 2.84 5.73 -2.39 -0.01 2.82 16 51 H 0.06 2.48 7.95 -2.39 -0.02 2.46 16 52 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.61 404.80 -2.16 -77.77 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.53 Total: 13.41 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.19 Total: 17.65 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -9.77 Total: -135.98 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.07 Total: -20.07 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.61 -2.16 -77.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316971362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.920 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds