Wall clock time and date at job start Sat Apr 11 2020 08:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48502 * 109.46879 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47416 * 120.00031 * 3 2 1 7 7 C 1.38807 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00057 * 179.37719 * 7 2 1 9 9 N 1.36934 * 120.00106 * 359.38557 * 7 2 1 10 10 C 1.46860 * 120.48026 * 144.17440 * 9 7 2 11 11 C 1.53320 * 109.11760 * 127.32630 * 10 9 7 12 12 C 1.52899 * 108.94541 * 54.09800 * 11 10 9 13 13 H 1.09004 * 109.53502 * 58.06240 * 12 11 10 14 14 C 1.53273 * 109.15560 * 297.89880 * 12 11 10 15 15 H 1.08998 * 109.46790 * 303.56607 * 14 12 11 16 16 C 1.52821 * 109.17723 * 183.75136 * 14 12 11 17 17 C 1.53148 * 109.25818 * 61.82782 * 16 14 12 18 18 C 1.53136 * 109.61144 * 299.14820 * 17 16 14 19 19 N 1.46714 * 110.27941 * 178.68136 * 12 11 10 20 20 C 1.34772 * 120.84415 * 353.93547 * 19 12 11 21 21 O 1.21280 * 120.00188 * 354.95764 * 20 19 12 22 22 C 1.50697 * 120.00305 * 174.95215 * 20 19 12 23 23 C 1.53001 * 109.47434 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47294 * 180.02562 * 23 22 20 25 25 N 1.46499 * 109.46936 * 179.97438 * 24 23 22 26 26 C 1.36880 * 126.39904 * 269.71399 * 25 24 23 27 27 C 1.34673 * 106.81719 * 179.84756 * 26 25 24 28 28 N 1.34129 * 108.02019 * 0.42108 * 27 26 25 29 29 C 1.30508 * 109.25337 * 359.73219 * 28 27 26 30 30 C 1.47078 * 120.47278 * 324.15093 * 9 7 2 31 31 H 0.97004 * 119.99863 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.53128 * 7.43767 * 10 9 7 33 33 H 1.08996 * 109.53567 * 247.22016 * 10 9 7 34 34 H 1.09002 * 109.55569 * 294.26495 * 11 10 9 35 35 H 1.08991 * 109.56266 * 173.94247 * 11 10 9 36 36 H 1.08997 * 109.50797 * 301.89668 * 16 14 12 37 37 H 1.08996 * 109.50428 * 181.75947 * 16 14 12 38 38 H 1.09000 * 109.44664 * 179.10427 * 17 16 14 39 39 H 1.08999 * 109.42833 * 59.16984 * 17 16 14 40 40 H 1.08999 * 109.53542 * 294.12693 * 18 17 16 41 41 H 1.08995 * 109.61055 * 173.91700 * 18 17 16 42 42 H 1.08998 * 109.47196 * 300.00149 * 22 20 19 43 43 H 1.09003 * 109.47105 * 60.00072 * 22 20 19 44 44 H 1.08998 * 109.47031 * 300.00225 * 23 22 20 45 45 H 1.09003 * 109.46937 * 59.99944 * 23 22 20 46 46 H 1.08998 * 109.47256 * 300.00076 * 24 23 22 47 47 H 1.09003 * 109.47184 * 60.00084 * 24 23 22 48 48 H 1.08001 * 126.59267 * 359.97438 * 26 25 24 49 49 H 1.08000 * 125.98970 * 180.19076 * 27 26 25 50 50 H 1.07996 * 125.64360 * 179.97438 * 29 28 27 51 51 H 1.08996 * 109.69413 * 113.63970 * 30 9 7 52 52 H 1.08998 * 109.72416 * 353.07721 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 -0.0096 9 7 1.3256 -2.3880 0.0138 10 6 1.8350 -3.5505 -0.7250 11 6 1.9128 -4.7531 0.2228 12 6 0.5457 -4.9601 0.8755 13 1 -0.2076 -5.1135 0.1027 14 6 0.1915 -3.7207 1.7047 15 1 0.9790 -3.5350 2.4351 16 6 -1.1304 -3.9642 2.4319 17 6 -0.9700 -5.1500 3.3877 18 6 -0.6057 -6.4064 2.5915 19 7 0.5788 -6.1252 1.7665 20 6 1.6673 -6.9175 1.8278 21 8 2.5997 -6.7263 1.0761 22 6 1.7259 -8.0411 2.8303 23 6 3.0589 -8.7793 2.6917 24 6 3.1182 -9.9205 3.7091 25 7 4.3943 -10.6276 3.5759 26 6 4.6460 -11.7041 2.7688 27 6 5.9389 -12.0340 2.9513 28 7 6.4598 -11.1880 3.8524 29 6 5.5403 -10.3428 4.2310 30 6 0.0698 -2.5158 0.7686 31 1 -0.4850 0.8401 0.0004 32 1 2.8287 -3.3282 -1.1140 33 1 1.1623 -3.7806 -1.5512 34 1 2.6599 -4.5626 0.9933 35 1 2.1869 -5.6448 -0.3408 36 1 -1.9106 -4.1865 1.7040 37 1 -1.4032 -3.0742 2.9988 38 1 -1.9067 -5.3165 3.9198 39 1 -0.1787 -4.9330 4.1051 40 1 -1.4403 -6.6849 1.9482 41 1 -0.3862 -7.2238 3.2782 42 1 1.6395 -7.6341 3.8377 43 1 0.9053 -8.7348 2.6470 44 1 3.1458 -9.1863 1.6843 45 1 3.8793 -8.0854 2.8752 46 1 3.0311 -9.5139 4.7167 47 1 2.2978 -10.6143 3.5251 48 1 3.9435 -12.1934 2.1104 49 1 6.4633 -12.8409 2.4611 50 1 5.6738 -9.5476 4.9495 51 1 -0.7597 -2.6693 0.0784 52 1 -0.1016 -1.6121 1.3534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317099286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:04 Heat of formation + Delta-G solvation = 54.118558 kcal Electronic energy + Delta-G solvation = -31174.913851 eV Core-core repulsion = 27176.132490 eV Total energy + Delta-G solvation = -3998.781361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23271 -40.54935 -37.93834 -35.87186 -35.74115 -32.99157 -32.85199 -32.08473 -30.24537 -29.67411 -29.22041 -27.36249 -25.57475 -24.78347 -23.09660 -22.53192 -21.96820 -21.55439 -21.04508 -20.26186 -19.38645 -18.91436 -17.66272 -16.71591 -16.55095 -16.12454 -15.80491 -15.33845 -14.97443 -14.80016 -14.39833 -14.23376 -14.20343 -14.01562 -13.74965 -13.49403 -13.45093 -13.16271 -12.99485 -12.69933 -12.48839 -12.30748 -12.20128 -12.17502 -11.87980 -11.49248 -11.25526 -10.99472 -10.96149 -10.87279 -10.78380 -10.68970 -10.27195 -10.19497 -10.03389 -10.01314 -9.87156 -9.81287 -9.47298 -8.80089 -8.74149 -8.45297 -8.27803 -6.49742 -5.77805 -3.30043 1.82523 2.48701 2.70265 2.98378 3.10728 3.38548 3.42929 3.44863 4.20912 4.25194 4.46915 4.49298 4.51538 4.67975 4.73461 4.81244 4.84531 4.96074 4.97926 5.10835 5.16705 5.21698 5.33922 5.41562 5.43132 5.45754 5.56112 5.60068 5.65077 5.72562 5.85794 5.89215 5.93733 6.02761 6.11448 6.23955 6.31628 6.39719 6.44433 6.51117 6.56812 6.66365 6.81335 6.93607 6.96793 7.04910 7.18484 7.38133 7.61240 7.72345 7.80885 7.86281 8.33818 8.53992 9.26051 9.85258 10.45478 11.29350 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002338 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.939653 B =11973.901875 C =13108.702216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.008 3.992 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.061 0.939 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.120 4.120 12 C 0.158 3.842 13 H 0.063 0.937 14 C -0.121 4.121 15 H 0.064 0.936 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.108 3.892 19 N -0.608 5.608 20 C 0.511 3.489 21 O -0.529 6.529 22 C -0.140 4.140 23 C -0.119 4.119 24 C 0.104 3.896 25 N -0.457 5.457 26 C -0.056 4.056 27 C -0.033 4.033 28 N -0.498 5.498 29 C 0.182 3.818 30 C 0.183 3.817 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.172 0.828 49 H 0.168 0.832 50 H 0.203 0.797 51 H 0.017 0.983 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -21.429 9.945 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.079 0.921 9 N -0.317 5.317 10 C 0.012 3.988 11 C -0.160 4.160 12 C 0.056 3.944 13 H 0.081 0.919 14 C -0.142 4.142 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.172 4.172 18 C -0.015 4.015 19 N -0.341 5.341 20 C 0.298 3.702 21 O -0.406 6.406 22 C -0.180 4.180 23 C -0.158 4.158 24 C -0.019 4.019 25 N -0.139 5.139 26 C -0.189 4.189 27 C -0.181 4.181 28 N -0.216 5.216 29 C -0.100 4.100 30 C 0.056 3.944 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.190 0.810 49 H 0.185 0.815 50 H 0.220 0.780 51 H 0.035 0.965 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.661 -21.108 9.815 23.338 hybrid contribution -0.696 0.969 -0.213 1.212 sum -2.357 -20.139 9.602 22.435 Atomic orbital electron populations 1.69899 1.05281 1.25514 1.54428 1.25306 0.95536 0.98292 0.99952 0.86356 0.78889 0.83231 0.78177 1.20818 1.21593 1.20968 1.19123 0.90160 0.83261 1.45633 0.92104 1.44032 1.25269 1.08225 1.54189 1.21148 0.97562 0.87468 0.92602 1.22524 0.94242 0.99201 0.99999 1.21334 0.99300 0.83222 0.90561 0.91887 1.22304 0.96137 0.97061 0.98732 0.91737 1.21486 0.98281 0.97276 0.97996 1.21920 1.01429 0.95436 0.98379 1.21719 0.88060 0.97833 0.93902 1.48353 1.14822 1.28271 1.42629 1.20420 0.82279 0.82973 0.84492 1.90763 1.37100 1.70826 1.41900 1.21647 0.98915 0.97266 1.00205 1.21692 0.97792 0.96438 0.99841 1.21968 0.83485 0.94962 1.01440 1.45585 1.11280 1.24437 1.32642 1.22745 0.99758 0.94281 1.02115 1.22310 0.92443 1.02214 1.01108 1.70298 1.30743 1.06329 1.14250 1.25025 0.81409 1.02150 1.01435 1.20830 0.87454 0.94269 0.91827 0.93551 0.92708 0.96853 0.92131 0.89979 0.92139 0.91535 0.91218 0.91794 0.91509 0.90409 0.88826 0.89025 0.90287 0.90128 0.88695 0.88972 0.81036 0.81494 0.78022 0.96487 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.98 10.85 55.49 0.60 -25.38 16 2 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 3 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -7.02 9.53 -15.06 -0.14 -7.16 16 8 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 9 N -0.59 -15.17 2.99 -172.25 -0.52 -15.68 16 10 C 0.14 3.11 6.50 -3.68 -0.02 3.08 16 11 C -0.12 -2.36 3.82 -26.62 -0.10 -2.46 16 12 C 0.16 2.70 2.64 -67.72 -0.18 2.52 16 13 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -2.22 2.20 -90.54 -0.20 -2.42 16 15 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 16 C -0.11 -1.60 5.24 -26.75 -0.14 -1.74 16 17 C -0.13 -1.40 6.07 -26.58 -0.16 -1.56 16 18 C 0.11 1.03 6.35 -3.66 -0.02 1.01 16 19 N -0.61 -8.13 2.97 -165.32 -0.49 -8.63 16 20 C 0.51 6.74 7.58 -10.99 -0.08 6.66 16 21 O -0.53 -9.07 11.65 5.56 0.06 -9.00 16 22 C -0.14 -1.07 4.06 -27.88 -0.11 -1.18 16 23 C -0.12 -0.96 4.83 -26.73 -0.13 -1.08 16 24 C 0.10 0.57 6.15 -4.04 -0.02 0.54 16 25 N -0.46 -3.80 2.75 -118.58 -0.33 -4.12 16 26 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 27 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 28 N -0.50 -6.12 11.25 -14.66 -0.16 -6.28 16 29 C 0.18 1.77 12.56 -90.37 -1.14 0.64 16 30 C 0.18 4.26 4.55 -3.69 -0.02 4.24 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.31 7.46 -51.93 -0.39 0.92 16 35 H 0.08 1.61 6.12 -51.93 -0.32 1.29 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 5.96 -51.93 -0.31 0.19 16 42 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 43 H 0.09 0.49 7.75 -51.93 -0.40 0.08 16 44 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 49 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 50 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -34.33 399.44 -11.67 -46.00 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.86 Total: 0.31 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.97 Total: -0.02 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.90 Total: -60.09 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.06 Total: -9.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.33 -11.67 -46.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317099286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.118 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds