Wall clock time and date at job start Sat Apr 11 2020 08:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00526 * 2 1 4 4 H 1.48497 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47273 * 300.00293 * 3 2 1 6 6 H 1.48506 * 109.47123 * 60.00201 * 3 2 1 7 7 C 1.38822 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99443 * 180.02562 * 7 2 1 9 9 N 1.36926 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99930 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47445 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.49755 * 304.93910 * 11 10 9 13 13 C 1.53039 * 109.52671 * 184.85851 * 11 10 9 14 14 C 1.53044 * 109.53797 * 178.66952 * 13 11 10 15 15 C 1.52756 * 109.38476 * 61.23640 * 14 13 11 16 16 N 1.46927 * 109.01129 * 305.58893 * 15 14 13 17 17 C 1.34774 * 120.63253 * 233.58566 * 16 15 14 18 18 O 1.21571 * 120.00198 * 172.78549 * 17 16 15 19 19 C 1.47715 * 119.99976 * 353.05742 * 17 16 15 20 20 N 1.32045 * 126.64622 * 353.03126 * 19 17 16 21 21 N 1.28679 * 110.10640 * 179.80683 * 20 19 17 22 22 H 0.96999 * 124.94920 * 179.83103 * 21 20 19 23 23 C 1.34770 * 110.09928 * 0.05958 * 21 20 19 24 24 C 1.35169 * 107.18594 * 0.37472 * 23 21 20 25 25 C 1.50391 * 126.25103 * 178.84594 * 24 23 21 26 26 C 1.53216 * 109.05411 * 27.91582 * 25 24 23 27 27 C 1.52652 * 109.65460 * 271.34116 * 26 25 24 28 28 C 1.52614 * 110.81126 * 61.53607 * 27 26 25 29 29 C 1.50692 * 127.32978 * 180.95251 * 23 21 20 30 30 C 1.46925 * 118.73886 * 53.30747 * 16 15 14 31 31 H 0.96999 * 119.99661 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00649 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47021 * 60.00062 * 10 9 7 34 34 H 1.08995 * 109.47322 * 300.00120 * 10 9 7 35 35 H 1.09000 * 109.45663 * 298.68582 * 13 11 10 36 36 H 1.08997 * 109.46043 * 58.65963 * 13 11 10 37 37 H 1.08997 * 109.49514 * 181.31455 * 14 13 11 38 38 H 1.08998 * 109.49555 * 301.40921 * 14 13 11 39 39 H 1.09003 * 109.51390 * 185.70566 * 15 14 13 40 40 H 1.09001 * 109.43218 * 65.42691 * 15 14 13 41 41 H 1.09004 * 109.54209 * 147.79193 * 25 24 23 42 42 H 1.09006 * 109.53917 * 268.04349 * 25 24 23 43 43 H 1.08994 * 109.44755 * 151.27833 * 26 25 24 44 44 H 1.09007 * 109.40896 * 31.37552 * 26 25 24 45 45 H 1.09003 * 109.20819 * 301.19459 * 27 26 25 46 46 H 1.09000 * 109.17855 * 181.85747 * 27 26 25 47 47 H 1.09006 * 109.41042 * 273.51090 * 28 27 26 48 48 H 1.09002 * 109.34957 * 153.69797 * 28 27 26 49 49 H 1.09001 * 109.52565 * 346.41083 * 29 23 21 50 50 H 1.09000 * 109.52873 * 106.62509 * 29 23 21 51 51 H 1.09003 * 109.58581 * 66.43119 * 30 16 15 52 52 H 1.08991 * 109.59212 * 186.71324 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3880 -0.0016 10 6 2.0579 -3.6569 -0.0027 11 6 1.0636 -4.8197 -0.0031 12 1 0.3802 -4.7144 0.8396 13 6 1.8236 -6.1426 0.1179 14 6 0.8275 -7.3040 0.1509 15 6 0.0274 -7.3228 -1.1503 16 7 -0.5889 -6.0044 -1.3523 17 6 -1.9149 -5.8916 -1.5653 18 8 -2.4336 -4.7927 -1.6003 19 6 -2.7390 -7.1035 -1.7502 20 7 -2.3019 -8.3447 -1.8597 21 7 -3.2935 -9.1516 -2.0064 22 1 -3.2170 -10.1131 -2.1091 23 6 -4.4535 -8.4655 -2.0014 24 6 -4.1438 -7.1585 -1.8499 25 6 -5.1171 -6.0126 -1.8119 26 6 -6.4628 -6.5168 -1.2805 27 6 -7.3154 -7.0242 -2.4407 28 6 -6.6332 -8.1945 -3.1437 29 6 -5.8469 -9.0256 -2.1253 30 6 0.2669 -4.8109 -1.3116 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 2.6845 -3.7154 0.8872 34 1 2.6845 -3.7139 -0.8927 35 1 2.4887 -6.2588 -0.7379 36 1 2.4105 -6.1415 1.0363 37 1 1.3683 -8.2440 0.2605 38 1 0.1464 -7.1753 0.9921 39 1 -0.7503 -8.0841 -1.0884 40 1 0.6944 -7.5459 -1.9830 41 1 -4.7351 -5.2314 -1.1547 42 1 -5.2489 -5.6127 -2.8174 43 1 -6.9828 -5.7016 -0.7776 44 1 -6.2919 -7.3288 -0.5737 45 1 -7.4664 -6.2152 -3.1554 46 1 -8.2828 -7.3501 -2.0584 47 1 -5.9513 -7.8128 -3.9036 48 1 -7.3887 -8.8216 -3.6170 49 1 -5.7948 -10.0609 -2.4624 50 1 -6.3449 -8.9813 -1.1567 51 1 0.9540 -4.8248 -2.1577 52 1 -0.3524 -3.9153 -1.3587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317165280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:11 Heat of formation + Delta-G solvation = 18.803562 kcal Electronic energy + Delta-G solvation = -31323.389971 eV Core-core repulsion = 27323.077236 eV Total energy + Delta-G solvation = -4000.312734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.93931 -41.05083 -38.83162 -38.46491 -36.61544 -34.59247 -33.87872 -33.11964 -32.07599 -31.72237 -31.08204 -27.49155 -26.95346 -26.41659 -25.36432 -24.86450 -24.22187 -22.66754 -21.36226 -20.86397 -20.52662 -19.96132 -19.14972 -18.79310 -17.81020 -17.21482 -16.95197 -16.69138 -16.24675 -16.00139 -15.61169 -15.55707 -15.37372 -15.29859 -15.07092 -14.37031 -14.33059 -14.23657 -14.18580 -14.06022 -13.96319 -13.73067 -13.25298 -13.03628 -12.97312 -12.80844 -12.58923 -12.38279 -12.15409 -12.09332 -11.97560 -11.93040 -11.78304 -11.64397 -11.53365 -11.36155 -11.32865 -11.22471 -10.97392 -10.77891 -10.36444 -9.68734 -9.57926 -9.01459 -7.93990 -5.24935 0.43420 1.07028 1.44831 1.47455 1.57538 1.73582 2.11526 2.27427 2.55450 3.22807 3.38574 3.62378 3.67599 3.81492 3.88673 3.94628 3.99040 4.04839 4.12278 4.13772 4.22391 4.26282 4.33674 4.38362 4.50163 4.52009 4.60573 4.70220 4.75208 4.80189 4.87131 4.90957 4.95015 4.96792 5.01979 5.04230 5.09232 5.10530 5.13341 5.21978 5.29141 5.32097 5.34180 5.42391 5.45984 5.46842 5.50003 5.56770 5.61779 6.12256 6.26194 6.37948 6.82918 7.11671 7.31414 8.07635 8.30499 9.29776 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002668 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.540221 B =10493.318869 C =12310.514853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.159 3.841 11 C -0.093 4.093 12 H 0.049 0.951 13 C -0.105 4.105 14 C -0.125 4.125 15 C 0.084 3.916 16 N -0.597 5.597 17 C 0.583 3.417 18 O -0.574 6.574 19 C -0.029 4.029 20 N -0.257 5.257 21 N -0.358 5.358 22 H 0.464 0.536 23 C 0.040 3.960 24 C -0.165 4.165 25 C -0.045 4.045 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.113 4.113 29 C -0.047 4.047 30 C 0.128 3.872 31 H 0.250 0.750 32 H 0.370 0.630 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.104 0.896 51 H 0.073 0.927 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 -30.912 -5.062 33.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.033 3.967 11 C -0.113 4.113 12 H 0.067 0.933 13 C -0.143 4.143 14 C -0.163 4.163 15 C -0.038 4.038 16 N -0.329 5.329 17 C 0.371 3.629 18 O -0.451 6.451 19 C -0.187 4.187 20 N -0.095 5.095 21 N -0.073 5.073 22 H 0.313 0.687 23 C -0.088 4.088 24 C -0.175 4.175 25 C -0.083 4.083 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.151 4.151 29 C -0.085 4.085 30 C 0.006 3.994 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.127 0.873 50 H 0.122 0.878 51 H 0.091 0.909 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.008 -30.854 -5.096 33.153 hybrid contribution -0.339 1.926 0.011 1.955 sum -11.348 -28.928 -5.085 31.487 Atomic orbital electron populations 1.69890 1.06926 1.25952 1.59536 1.25701 0.96387 1.01531 1.03758 0.84994 0.78286 0.79390 0.76601 1.18554 1.22137 1.21981 1.19720 0.91603 0.85251 1.41069 0.90161 1.42699 1.05563 1.01508 1.89395 1.20832 0.93501 0.84142 0.98273 1.21530 0.97008 0.96435 0.96334 0.93287 1.21516 0.97666 0.91643 1.03487 1.21829 0.97867 0.99759 0.96826 1.22578 0.99534 0.83456 0.98184 1.48082 1.06096 1.09213 1.69488 1.17597 0.81788 0.87091 0.76437 1.90809 1.72574 1.28424 1.53325 1.21441 0.93922 0.91156 1.12184 1.73396 1.15694 1.00101 1.20287 1.43393 1.02339 1.10974 1.50638 0.68698 1.21498 0.91488 0.90626 1.05149 1.20058 0.92269 0.95976 1.09233 1.19901 0.93610 0.93859 1.00940 1.21682 0.93745 1.01216 0.98815 1.21519 0.99025 0.98157 0.96927 1.21525 0.99354 0.96898 0.97301 1.20456 0.85551 1.00313 1.02219 1.21448 0.92747 0.87292 0.97960 0.94132 0.79814 0.95322 0.95367 0.90233 0.90377 0.87175 0.93044 0.85183 0.90357 0.93540 0.91940 0.91825 0.90512 0.92499 0.89861 0.93300 0.88570 0.87253 0.87770 0.90900 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.64 13.06 21.65 0.28 -64.36 16 2 C -0.08 -5.04 5.50 84.87 0.47 -4.57 16 3 Si 0.98 48.87 29.55 68.60 2.03 50.90 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.24 -14.59 9.99 84.04 0.84 -13.75 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.75 -41.72 5.38 -343.45 -1.85 -43.57 16 10 C 0.16 6.81 5.66 86.38 0.49 7.30 16 11 C -0.09 -3.38 2.37 -10.72 -0.03 -3.40 16 12 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 13 C -0.11 -2.66 5.17 30.62 0.16 -2.50 16 14 C -0.12 -2.67 6.06 30.53 0.19 -2.48 16 15 C 0.08 2.03 6.09 86.22 0.52 2.56 16 16 N -0.60 -20.36 2.98 -823.29 -2.45 -22.81 16 17 C 0.58 22.42 7.69 86.75 0.67 23.09 16 18 O -0.57 -27.44 14.76 -3.94 -0.06 -27.50 16 19 C -0.03 -0.88 6.82 42.28 0.29 -0.59 16 20 N -0.26 -5.64 8.75 -48.41 -0.42 -6.06 16 21 N -0.36 -4.85 6.83 -48.19 -0.33 -5.18 16 22 H 0.46 1.89 8.96 -219.89 -1.97 -0.08 16 23 C 0.04 0.63 6.37 41.40 0.26 0.89 16 24 C -0.17 -4.22 5.68 -20.01 -0.11 -4.33 16 25 C -0.04 -1.20 5.25 29.82 0.16 -1.04 16 26 C -0.12 -2.06 5.54 30.55 0.17 -1.89 16 27 C -0.12 -1.42 5.65 30.35 0.17 -1.25 16 28 C -0.11 -1.04 5.63 30.52 0.17 -0.87 16 29 C -0.05 -0.34 5.55 29.90 0.17 -0.18 16 30 C 0.13 5.00 5.53 86.36 0.48 5.48 16 31 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 32 H 0.37 22.69 6.89 -92.71 -0.64 22.05 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.13 2.93 4.18 -23.30 -0.10 2.83 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.61 7.03 -2.39 -0.02 1.59 16 42 H 0.06 1.74 7.83 -2.38 -0.02 1.72 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.18 5.66 -2.38 -0.01 1.17 16 45 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.05 0.66 7.79 -2.38 -0.02 0.64 16 48 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.10 0.62 6.35 -2.39 -0.02 0.61 16 51 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.05 2.64 6.20 -2.39 -0.01 2.62 16 Total: -1.00 -84.86 394.14 0.51 -84.35 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -1.75 Total: 31.77 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.06 Total: 2.46 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -4.77 Total: -141.98 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -84.86 0.51 -84.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317165280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.157 kcal (2) G-P(sol) polarization free energy of solvation -84.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds